Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	115	276.2	7960526	99.2%	7896841	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,725,049	T→C	K40K (AAA→AAG)	U712_19205 ←	Uncharacterized protein ywcI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,725,049	0	T	C	99.4%	1341.3 / NA	359	K40K (AAA→AAG)	U712_19205	Uncharacterized protein ywcI
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (166/191); minor base G (2/0); total (168/191)
Fisher's exact test for biased strand distribution p-value = 2.18e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 376 total aligned reads displayed.

AGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTTTGTTTTTCTTCCTCATTCACAGCCATCCGCCACTCATAAAACGAAACAAGTCCCGCGGCCTGCACCGCCGCTTTTCTTTGGTATGTACGCTGAGCCGAATAGACAGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTG  >  CP006881/3724902‑3725195

cgCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCctt                                                                                                                                                   <  1:587042/149‑1 (MQ=255)

  ctctctCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGGCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTc                                                                                                                                                 <  1:797138/150‑1 (MQ=255)

    ctctcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCtt                                                                                                                                               >  2:2126780/1‑150 (MQ=255)

    ccctcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCtt                                                                                                                                               <  1:1717616/148‑1 (MQ=255)

      ctcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCCCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATCCATAACACGCAACGAGTCCTGCGACCTGCACAGCCGCCTTTCTTTg                                                                                                                                             >  2:93216/1‑150 (MQ=255)

          tGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCCCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACGGCCGCCTTTCCTTGGTAt                                                                                                                                         >  1:295758/1‑150 (MQ=255)

           gCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATg                                                                                                                                        >  1:3607118/1‑150 (MQ=255)

           gCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATg                                                                                                                                        >  2:2943622/1‑150 (MQ=255)

           gCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATg                                                                                                                                        <  2:2740736/150‑1 (MQ=255)

           gCTGTGGCGATTCCTTGAAGGCTTGCAAACATCTTTTTTTATAAAGCGCGCCGGCTTTCGCTTTCTGCTTTTCTTCCTCATCCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCCCAGCCGCCTTTCTTTGGTATg                                                                                                                                        <  1:1919378/150‑1 (MQ=255)

              ttGGCGATTCCTTGAAGGCTTGCAAACACCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTAc                                                                                                                                     <  2:1979221/150‑1 (MQ=255)

               tGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCACTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACg                                                                                                                                    >  2:2209991/1‑150 (MQ=255)

                 gCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCt                                                                                                                                  <  1:473719/150‑1 (MQ=255)

                 gCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGGATGTACGCt                                                                                                                                  >  1:2477372/1‑150 (MQ=255)

                 gCGATCCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCt                                                                                                                                  <  2:842786/150‑1 (MQ=255)

                  cGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTg                                                                                                                                 <  1:2845760/150‑1 (MQ=255)

                  cGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTg                                                                                                                                 >  2:2846272/1‑150 (MQ=255)

                      tCCTTGAAGGCTTGCAACCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGcc                                                                                                                             <  1:1263905/150‑1 (MQ=255)

                      tCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATCCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGcc                                                                                                                             <  1:1136060/150‑1 (MQ=255)

                       ccTTGAAGGCTTGCAAACATCTTCTCTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTCCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCg                                                                                                                            <  2:1100379/150‑1 (MQ=255)

                         ttGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGaa                                                                                                                          <  1:829567/150‑1 (MQ=255)

                           gAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGGCGAATa                                                                                                                        >  2:2014056/1‑150 (MQ=255)

                             aGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGGATAgg                                                                                                                      >  2:3660884/1‑149 (MQ=255)

                             aGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGGCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGGACGCTGGGCCGGATAGa                                                                                                                      >  2:1421399/1‑150 (MQ=255)

                               gCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGAcc                                                                                                                    >  1:1849403/1‑149 (MQ=255)

                                cTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGTATAGAccg                                                                                                                   >  1:1559155/1‑148 (MQ=255)

                                cTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATCCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCCCCTTTCTTTGGGATGGTCGCTGGGACGGATAgcccc                                                                                                                   >  2:1348678/1‑146 (MQ=255)

                                    cAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGc                                                                                                               <  1:510299/150‑1 (MQ=255)

                                     aaccATCTCCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCCCCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCa                                                                                                              <  1:354393/147‑1 (MQ=255)

                                     aaaCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCa                                                                                                              >  1:1958402/1‑150 (MQ=255)

                                      aaCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAg                                                                                                             <  1:2126780/150‑1 (MQ=255)

                                      aaCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTCCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAg                                                                                                             <  1:36628/150‑1 (MQ=255)

                                        cATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGGATGTACGCTGAGCCGAATAGACCGCGGCGGcc                                                                                                           >  2:2649903/1‑150 (MQ=255)

                                         aTCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTCCTTCCTCATTCACAGCCACCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑g                                                                                                         <  1:252469/150‑1 (MQ=255)

                                           cttcttTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCCAATAGACCGCGGCAGCC‑GCa                                                                                                       >  2:749968/1‑150 (MQ=255)

                                            ttcttTTATAAAGCGCGGCGGCTTCCGCTTCCTGCTTTTCTTCCTCATTCCCAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAg                                                                                                      <  1:437921/150‑1 (MQ=255)

                                              cttTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGGC‑GCAGtg                                                                                                    >  2:3027104/1‑149 (MQ=255)

                                               ttttATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGGGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGGACGCTGGGCCGAAAAGACCCCGGCAGAC‑ggccgtt                                                                                                   >  1:884345/1‑144 (MQ=255)

                                                  tataAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCCCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCC‑GCAGTGTTTc                                                                                                >  2:1647688/1‑150 (MQ=255)

                                                   ataAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAACCGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCt                                                                                               <  1:387438/150‑1 (MQ=255)

                                                   ataAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCt                                                                                               <  1:3700278/150‑1 (MQ=255)

                                                    taAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCC‑GGAGGTTTTCTg                                                                                              >  2:453322/1‑150 (MQ=255)

                                                    taAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGGC‑GCAGTTTTTCTg                                                                                              >  2:3564956/1‑150 (MQ=255)

                                                     aaaGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGGCCGCGGCAGGG‑GCAGGTTTTCTGt                                                                                             >  2:2287485/1‑150 (MQ=255)

                                                     aaaGCGCGGCGGCTTCCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATACATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGt                                                                                             <  1:2330488/150‑1 (MQ=255)

                                                      aggcgcGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTc                                                                                            <  1:1193301/148‑1 (MQ=255)

                                                      aaGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGGATAGACCGCGGCAGCC‑GCAGGTTTTCTgcc                                                                                            >  2:1862638/1‑148 (MQ=255)

                                                       aGCGCGGCGGCTTTCGCTTTCTGCTTTTCCTCCACATTCACAGCCATCCGCCATCCATAGAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGGGGCAGCC‑GCAGTTTTTCTGTcc                                                                                           <  2:3746083/150‑1 (MQ=255)

                                                        gcgcGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCg                                                                                          <  1:2902759/150‑1 (MQ=255)

                                                        gcgcGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACACCCCTCCGCCATTCATAAAACGAAACGCGTCCTGCGGCCTGCACAGCCGCGTTTCCTTGGGATGTACGCTGCGCCGAAAAGACCGCGGCAGCC‑CCAGTTTTTCTGTTCg                                                                                          >  1:3915590/1‑150 (MQ=255)

                                                         cgcgGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCGCAGCCATCCGCCCTTCATAAAACGAAAGGAGTCCTGCGGCCTGCACATCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCgg                                                                                         <  1:2687207/150‑1 (MQ=255)

                                                          gcggcgGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGGATAGAACGCGGCAGCCGGCAG‑TTTTCTGTTCggg                                                                                        >  1:3479228/1‑149 (MQ=255)

                                                           cggcggCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCACCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCg                                                                                       <  1:1024810/150‑1 (MQ=255)

                                                            ggcggcTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGGGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCCCGGCAGGC‑GCAGGTGTTCTGTCCCGCGt                                                                                      >  2:2516147/1‑150 (MQ=255)

                                                               ggcTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCAc                                                                                   >  2:2825777/1‑150 (MQ=255)

                                                               ggcTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCAc                                                                                   <  1:2143018/150‑1 (MQ=255)

                                                                gctttcgctttcTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGGC‑CCAGTTTTTCTGTCCGGCGTcccc                                                                                  >  1:2448527/1‑150 (MQ=255)

                                                                  tttCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCC‑GCAGGTTTTCTGTCCGGCGGCAcccc                                                                                >  2:1201460/1‑149 (MQ=255)

                                                                         ttctgcttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTtcatc                                                                         >  1:2208411/7‑150 (MQ=255)

                                                                           ctgcttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGGTCATCaa                                                                       >  1:3802118/5‑150 (MQ=255)

                                                                              cttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCACGTTGTCTGTCCGGCGGCACCCCGCTCATCaaaaa                                                                    >  2:246569/2‑150 (MQ=255)

                                                                                 ttcttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGAc                                                                 <  1:343732/150‑1 (MQ=255)

                                                                                  tcttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGAcc                                                                <  2:609981/150‑1 (MQ=255)

                                                                                  tcttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGAcc                                                                >  1:1654899/1‑150 (MQ=255)

                                                                                   cttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGGCCGCGGCAGTC‑GCAGGTTTTCTGGCCCGCGTCACCCAGTTCCTCAAAAAGACCa                                                               >  1:3039561/1‑150 (MQ=255)

                                                                                   cttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCa                                                               >  2:1512259/1‑150 (MQ=255)

                                                                                   cttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCa                                                               <  2:1034910/150‑1 (MQ=255)

                                                                                    ttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCC‑GCAGGTTTTCTGTCCCGCGTCACCCAGGTCATCAAAAAGACCAt                                                              >  2:53172/1‑150 (MQ=255)

                                                                                       cTCATTCACACCCATCCGCCTTTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCca                                                           <  1:673493/150‑1 (MQ=255)

                                                                                           ttCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACAcc                                                       <  1:1884255/150‑1 (MQ=255)

                                                                                           ttCACAGCCAACCCCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATC‑AAAAGACCATCCACAccc                                                      <  1:2287713/150‑1 (MQ=255)

                                                                                             cacaGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCg                                                     <  1:153727/150‑1 (MQ=255)

                                                                                             cacaGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCg                                                     >  2:1592251/1‑150 (MQ=255)

                                                                                              acaGCCATCCGCCATTCATAAAACGAAACGAGCCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGt                                                    <  1:138294/150‑1 (MQ=255)

                                                                                                ggccccccGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAACAAGACCATCCACACCCGTaa                                                  <  1:2003570/144‑1 (MQ=255)

                                                                                                 gCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCCCAGCCGCCTTCCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTaaa                                                 <  1:721960/150‑1 (MQ=255)

                                                                                                   cATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTTTGTCCGGGGCCACCCAGTTCACCAAAAAGAGCATCCACAccccccaaga                                               >  1:1760487/1‑143 (MQ=255)

                                                                                                          cattCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGGCCGCGGGACCC‑GCAGGTTTTTTGACCGCCGGCACCCCGGGCCTTAAAAAAGCCCTCCACACCCCAAAAGACACaacc                                        >  1:1476609/4‑148 (MQ=255)

                                                                                                           attCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCCGTTCATCAACAAGACCATCCACACCCCCAAAGGTACAAGCa                                       >  2:3152027/3‑150 (MQ=255)

                                                                                                            ttCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGCTCATCAAAAAGACCATCCACACCCGCAAAGATACAAGCaa                                      >  2:3336511/2‑150 (MQ=255)

                                                                                                              cATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GGAGGTTTTCTGTCCGGCGTCACCCCGTTCATCCAAAAGACCATCCACCCCCCTAAAGATACAAGCAAAc                                    >  1:3314605/1‑150 (MQ=255)

                                                                                                                     cGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCAt                             <  1:919113/150‑1 (MQ=255)

                                                                                                                     cGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGGATGTACGCTGGGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGAAACAAGCAAAAGTTTCAt                             >  1:648935/1‑150 (MQ=255)

                                                                                                                       atacgaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAg                           <  1:3174857/145‑1 (MQ=255)

                                                                                                                         acgaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCCGTTCATCAAAAAGACCAACCACACCCGTAAAGAGACAAGCAAACGGTTCATAGaa                         >  1:280533/4‑150 (MQ=255)

                                                                                                                           gaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGaaaa                       >  2:3465666/2‑150 (MQ=255)

                                                                                                                            aGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGaaaaa                      >  2:2552259/1‑150 (MQ=255)

                                                                                                                             gTCCTGCGGCCTGCCCAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAAc                     <  1:1299410/150‑1 (MQ=255)

                                                                                                                              tCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGCCCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTCCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCACACGTTTCATAGAAAAACa                    <  1:2646876/150‑1 (MQ=255)

                                                                                                                                ctgcgGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑CCAGGTTTTCTGTCCGGCGGCACCCAGTTCCTCAAAAAGGCCATCCACACCCCTAAAGAAACAAGCACACGTTTCATAGAAAAACacc                  >  1:179951/3‑148 (MQ=255)

                                                                                                                                 tgcgGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATcc                 <  2:2407792/149‑1 (MQ=255)

                                                                                                                                  gcgGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATccc                <  2:3960433/150‑1 (MQ=255)

                                                                                                                                    ggCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTc              <  1:2399482/150‑1 (MQ=255)

                                                                                                                                     gCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTcc             <  1:2751693/150‑1 (MQ=255)

                                                                                                                                     gCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGACACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTcc             <  1:752661/150‑1 (MQ=255)

                                                                                                                                             agccgccTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGGC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCCCACCCGGAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCttt     >  1:1824024/2‑150 (MQ=255)

                                                                                                                                             agccgccTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCttt     <  1:2256569/149‑1 (MQ=255)

                                                                                                                                             agccgccTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGCAAAGATACAAGCAAACGTCTCTTAGAAAAACATCCCTCCCCTTCttt     >  1:2549239/2‑150 (MQ=255)

                                                                                                                                             acccgcCTGTCTTGGGTATGTCCGCTGACCGCAATAGGCCGCGGCAGCC‑GCAGTTTTTCTGCCCGGCGTCTCCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCATACGTTTCATAGAAAAACATCTGTCCGCTTCttt     <  2:1778676/148‑1 (MQ=255)

                                                                                                                                                cgcCTTTCTTTGGTATGTACCCTGAGCCGAATAGACCGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCGTCCGCTTCTTTTTg  <  1:1065414/150‑1 (MQ=255)

AGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTTTGTTTTTCTTCCTCATTCACAGCCATCCGCCACTCATAAAACGAAACAAGTCCCGCGGCCTGCACCGCCGCTTTTCTTTGGTATGTACGCTGAGCCGAATAGACAGCGGCAGCC‑GCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACATCCCTCCGCTTCTTTTTG  >  CP006881/3724902‑3725195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A