Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F80 I0 R1 1105 125.4 6144758 94.6% 5812941 133.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,551,327 A→C 20.0% intergenic (+44/+82) groL → / ← pykA chaperonin GroEL/pyruvate kinase II

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,551,3270AC20.0% 230.4 / 69.6 125intergenic (+44/+82)groL/pykAchaperonin GroEL/pyruvate kinase II
Reads supporting (aligned to +/- strand):  ref base A (47/53);  new base C (14/11);  total (61/64)
Fisher's exact test for biased strand distribution p-value = 5.04e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.22e-01

Only 100 of 131 total aligned reads displayed.

TCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGC  >  NC_002947/1551178‑1551476
                                                                                                                                                      |                                                                                                                                                     
tCTGATGATCACCCCCGAACCCATGCATGCCTACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTAATATGTGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCga                                                                                                                                                       <  1:1300320/150‑1 (MQ=255)
  tgatgaTCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCgaga                                                                                                                                                     >  1:1859364/1‑150 (MQ=255)
  tgatgaTCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCgaga                                                                                                                                                     >  1:3020347/1‑150 (MQ=255)
       atCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAACCgg                                                                                                                                                <  2:1523572/150‑1 (MQ=255)
       atCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCgg                                                                                                                                                <  2:2047988/150‑1 (MQ=255)
       atCACCACCGAAGCCATGGTTGCAGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCgg                                                                                                                                                <  1:1247684/150‑1 (MQ=255)
        tCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCggg                                                                                                                                               <  2:319177/150‑1 (MQ=255)
        tCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCggg                                                                                                                                               <  1:1864644/150‑1 (MQ=255)
          accaccGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGc                                                                                                                                             >  2:1296479/1‑150 (MQ=255)
          accaccGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGc                                                                                                                                             >  1:1948035/1‑150 (MQ=255)
             accGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCttt                                                                                                                                          >  1:1528103/1‑150 (MQ=255)
                     cATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGc                                                                                                                                  <  1:87544/150‑1 (MQ=255)
                      aTGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAACCgggg                                                                                                                                              <  2:2696841/137‑1 (MQ=255)
                      aTGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAACCgggg                                                                                                                                              >  1:2696841/1‑137 (MQ=255)
                            gCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTAGACGTGTG‑GTCTTGAGGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCggg                                                                                                                           <  1:2993734/150‑1 (MQ=255)
                              cGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGc                                                                                                                         <  1:1340836/150‑1 (MQ=255)
                                  cTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAACCGGGGc                                                                                                                                             >  1:319401/1‑126 (MQ=255)
                                  cTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAACCGGGGc                                                                                                                                             <  2:319401/126‑1 (MQ=255)
                                  cTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCctct                                                                                                                     >  2:1210498/1‑150 (MQ=255)
                                      cGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgc                                                                                                                 >  1:2274803/1‑150 (MQ=255)
                                          aGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgcagca                                                                                                             <  1:1507849/150‑1 (MQ=255)
                                              aaGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACTCCCCTGCACCATCAAAAAGCCCCGGTTCGCga                                                                                                                                                       <  1:445938/104‑1 (MQ=255)
                                              aaGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACTCCCCTGCACCATCAAAAAGCCCCGGTTCGCga                                                                                                                                                       >  2:445938/1‑104 (MQ=255)
                                              aaGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCt                                                                                                                                            <  1:2786779/115‑1 (MQ=255)
                                              aaGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCt                                                                                                                                            >  2:2786779/1‑115 (MQ=255)
                                              aaGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCt                                                                                                                                 >  2:1815537/1‑126 (MQ=255)
                                              aaGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAg                                                                                                         >  2:2158230/1‑150 (MQ=255)
                                              aaGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAg                                                                                                         <  2:280633/150‑1 (MQ=255)
                                              aaGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACACCCCTGCACCATCAAAAAGCCACGGTCCGCGAGAACCGGGGCTTTTTTATTGCTGTCGAGGCCTCTTAGAAGCACAAg                                                                                                         >  2:468400/1‑150 (MQ=255)
                                                   aGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAACCGGGGc                                                                                                                                             <  1:963870/109‑1 (MQ=255)
                                                   aGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAACCGGGGc                                                                                                                                             <  1:963858/109‑1 (MQ=255)
                                                   aGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAACCGGGGc                                                                                                                                             >  2:963858/1‑109 (MQ=255)
                                                   aGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAACCGGGGc                                                                                                                                             >  2:963870/1‑109 (MQ=255)
                                                   aGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTg                                                                                                                                   <  2:1949661/119‑1 (MQ=255)
                                                   aGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTgc                                                                                                    <  1:1210498/150‑1 (MQ=255)
                                                   aGCTGCTGGCATGCCTGATATGGGTAGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTg                                                                                                                                   >  1:1949661/1‑119 (MQ=255)
                                                             aTGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAACCgg                                                                                                                                                <  1:1853845/96‑1 (MQ=255)
                                                             aTGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAACCgg                                                                                                                                                >  2:1853845/1‑96 (MQ=255)
                                                              tGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCtt                                                                                         <  1:2158230/150‑1 (MQ=255)
                                                                 cTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCgggg                                                                                                                                              <  1:186045/94‑1 (MQ=255)
                                                                 cTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTtgtg                                                                                      >  1:295084/1‑150 (MQ=255)
                                                                     tatGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCTCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCtgt                                                                                  <  2:2774005/150‑1 (MQ=255)
                                                                     tatGGGTGCCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCtgt                                                                                  <  1:130853/150‑1 (MQ=255)
                                                                          gtggcatgggt‑ggcatggGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTACGCGAGAACCGGGGCTTTGTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAAc                                                                             >  1:217117/1‑150 (MQ=255)
                                                                               atgggt‑ggcatgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTg                                                                        >  2:94904/1‑150 (MQ=255)
                                                                               atgggt‑ggcatgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTg                                                                        >  1:2426482/1‑150 (MQ=255)
                                                                                 gggt‑ggctgaggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGa                                                                      <  1:1665480/150‑1 (MQ=255)
                                                                                 gggt‑ggcatgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGa                                                                      <  1:2448637/150‑1 (MQ=255)
                                                                                  ggt‑ggcatgggCGGCATGATGTAAGCCAGCTTTTCCCCCCTGCACCATCAAAAATCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGTGCCTTGTGCTGTGAAACGAGTGGAt                                                                     <  1:13338/150‑1 (MQ=255)
                                                                                   gt‑ggcatgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGa                                                                                              >  1:823930/1‑124 (MQ=255)
                                                                                   gt‑ggcatgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGa                                                                                              <  2:823930/124‑1 (MQ=255)
                                                                                       gcatgggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAAc                                                                 <  2:407979/150‑1 (MQ=255)
                                                                                       gcatgggCGGCATGATGTAAGCCAGCCCTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTAt                                                                                                                                     >  1:1552447/1‑82 (MQ=255)
                                                                                       gcatgggCGGCATGATGTAAGCCAGCCCTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTAt                                                                                                                                     <  2:1552447/82‑1 (MQ=255)
                                                                                           gggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGAc                                                             >  1:964697/1‑150 (MQ=255)
                                                                                           gggCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGAc                                                             <  2:777218/150‑1 (MQ=255)
                                                                                               ggcATGATGTAACCCTGCCTTACCCCCCTGCACCATCAAAAATCCCCGGTCCCCGAGAACCGGGGCTTTTTTATTTCTGTCTGGGCCTCTTCGCAGCACAATTCTGCGCTTGAGCCTTGTTCTGTGAAACGAGTGGATCAACCGACCAGc                                                         <  1:468400/150‑1 (MQ=255)
                                                                                                gcATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCg                                                        >  1:926148/1‑150 (MQ=255)
                                                                                                gcATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGCATCAACCGACCAGCg                                                        <  2:1233493/150‑1 (MQ=255)
                                                                                                        tAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCg                                                >  1:479114/1‑150 (MQ=255)
                                                                                                           gccagccTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACg                                             >  1:2578638/1‑150 (MQ=255)
                                                                                                            gcagccTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCtgt                                                                                  >  2:282699/2‑112 (MQ=255)
                                                                                                            gcagccTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCtgt                                                                                  <  1:282699/111‑1 (MQ=255)
                                                                                                             cagccTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTg                                           <  2:2040569/150‑1 (MQ=255)
                                                                                                                ccTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAg                                        <  1:2037409/150‑1 (MQ=255)
                                                                                                                      cccccTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCtt                                  >  1:2210868/1‑150 (MQ=255)
                                                                                                                         ccTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCAt                               <  2:2578638/150‑1 (MQ=255)
                                                                                                                                 ataaaaaaGCCCCGGTTCTCGCGAACCGGGGCTTTTTGA‑TGGTGCAGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGCTTTTCGACTTGCAGGATCTTCATGCCATTGGt                      <  1:2383916/147‑1 (MQ=21)
                                                                                                                                 aTCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTgg                       <  2:926148/150‑1 (MQ=255)
                                                                                                                                  taaaaaaGCCCCGGTTCTCGCGAACCGGGGCTTTTTTATTGCGGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGAACAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt                      >  1:718407/3‑150 (MQ=39)
                                                                                                                                  tCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTTCAGGATCTTCATGCCAt                          <  1:2821135/146‑1 (MQ=255)
                                                                                                                                     aaaaGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATc                                                                    >  2:2838862/1‑101 (MQ=255)
                                                                                                                                          ccccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCa                                         >  1:2992600/1‑123 (MQ=255)
                                                                                                                                          ccccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCa                                         <  2:2992600/123‑1 (MQ=255)
                                                                                                                                          ccccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCt                                   >  1:319850/1‑129 (MQ=255)
                                                                                                                                          ccccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCt                                   <  2:319850/129‑1 (MQ=255)
                                                                                                                                          ccccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTc                                 >  2:2511870/1‑131 (MQ=255)
                                                                                                                                          ccccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTc                                 <  1:2511870/131‑1 (MQ=255)
                                                                                                                                          ccccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGa              >  2:527030/1‑150 (MQ=255)
                                                                                                                                          ccccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt                      <  2:618624/142‑1 (MQ=255)
                                                                                                                                          ccccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt                      >  1:618624/1‑142 (MQ=255)
                                                                                                                                          ccccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGa              >  1:762496/1‑150 (MQ=255)
                                                                                                                                           cccGGTTCTCGCGAACCGGGGCTTTTTGA‑TGGTGCAGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATg            <  1:2296457/150‑1 (MQ=38)
                                                                                                                                           cccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGt                                                                         <  2:1349529/90‑1 (MQ=255)
                                                                                                                                           cccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGt                                                                         >  1:1349529/1‑90 (MQ=255)
                                                                                                                                           cccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGAt             >  1:1081100/1‑150 (MQ=255)
                                                                                                                                           cccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGAt             >  1:2742292/1‑150 (MQ=255)
                                                                                                                                            ccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATg            >  2:706445/1‑150 (MQ=255)
                                                                                                                                            ccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTtgtg                                                                                      >  1:2418854/1‑76 (MQ=255)
                                                                                                                                            ccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTtgtg                                                                                      <  2:2418854/76‑1 (MQ=255)
                                                                                                                                            ccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATg            >  2:1673365/1‑150 (MQ=255)
                                                                                                                                            ccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATg            >  2:838765/1‑150 (MQ=255)
                                                                                                                                               gTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAAcc                                                                >  1:1203206/1‑95 (MQ=255)
                                                                                                                                               gTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGgtg         <  2:552369/150‑1 (MQ=255)
                                                                                                                                                 tCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGtgtg       <  2:479114/150‑1 (MQ=255)
                                                                                                                                                  cgcgAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACTGATAGTGTgg      <  2:1528103/150‑1 (MQ=255)
                                                                                                                                                  cgcgAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTgg      <  2:2229904/150‑1 (MQ=255)
                                                                                                                                                    cgAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGt                                                                         <  1:760437/81‑1 (MQ=255)
                                                                                                                                                    cgAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGt                                                                         >  2:760437/1‑81 (MQ=255)
                                                                                                                                                    cgAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGAGCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTa    <  2:2210868/150‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                     
TCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGT‑GGCATGGGCGGCATGATGTAAGCCAGCCTTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTGGTAGC  >  NC_002947/1551178‑1551476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A