Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,714,480 |
A→G |
F256S (TTC→TCC) |
tyrS ← |
tyrosine tRNA synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,714,480 | 0 | A | G | 98.6%
| 440.2
/ ‑5.4
| 138 | F256S (TTC→TCC) | tyrS | tyrosine tRNA synthetase |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (72/64); total (73/65) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 142 total aligned reads displayed.
AGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCAGC > NC_000913/1714390‑1714569
|
aGGGGGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCTGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGAt < 1:3775627/93‑1 (MQ=255)
aGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGAt > 2:4109754/1‑93 (MQ=255)
aGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGAt > 1:656225/1‑93 (MQ=255)
aGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGAt < 1:3775626/93‑1 (MQ=255)
gggCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGAtt < 1:1057425/93‑1 (MQ=255)
gggCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGAtt > 2:2806124/1‑93 (MQ=255)
gggCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGAtt < 1:898359/93‑1 (MQ=255)
ggCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGAttt < 1:4517425/93‑1 (MQ=255)
gTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTa > 2:764907/1‑93 (MQ=255)
gTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTa > 2:3208103/1‑93 (MQ=255)
gTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTa > 1:2369228/1‑93 (MQ=255)
ttctTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCt < 1:124331/92‑1 (MQ=255)
ctctTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCt < 1:1617135/93‑1 (MQ=255)
ctctTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCt > 1:4065443/1‑93 (MQ=255)
atctGCAATGCTAATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCt < 2:1820598/92‑1 (MQ=255)
ctTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTgg < 2:1124383/93‑1 (MQ=255)
ctTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTgg < 1:2231997/93‑1 (MQ=255)
ttCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGt < 2:3650956/93‑1 (MQ=255)
ttCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGt > 2:2029232/1‑93 (MQ=255)
ttCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGt > 2:1168416/1‑93 (MQ=255)
ttCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGt > 2:1168415/1‑93 (MQ=255)
cAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGttt > 1:3438700/1‑93 (MQ=255)
cAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGttt > 1:693676/1‑93 (MQ=255)
aaTGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGtttt > 2:644458/1‑93 (MQ=255)
aaTGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGtttt > 2:587039/1‑93 (MQ=255)
aTGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTttc < 2:970195/93‑1 (MQ=255)
aTGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTttc < 2:1737276/93‑1 (MQ=255)
aTGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTttc > 1:3733725/1‑93 (MQ=255)
tGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTttct > 1:4633334/1‑93 (MQ=255)
cTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTttcttc < 1:2401168/93‑1 (MQ=255)
tCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCg > 2:108124/1‑93 (MQ=255)
cATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCgg < 1:3934222/93‑1 (MQ=255)
cATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCgg < 1:3934223/93‑1 (MQ=255)
aTAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGa > 2:686137/1‑93 (MQ=255)
tAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGAt > 1:2798075/1‑93 (MQ=255)
aaaGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATc < 1:3802432/93‑1 (MQ=255)
aaGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATcc < 1:579549/93‑1 (MQ=255)
aaGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATcc < 1:361210/93‑1 (MQ=255)
aaGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATcc > 2:2030085/1‑93 (MQ=255)
aaGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATcc > 1:2164178/1‑93 (MQ=255)
gaagaaCTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCa > 2:1233816/1‑93 (MQ=255)
aagaaCTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAg < 1:3382115/93‑1 (MQ=255)
aagaaCTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAg > 1:1939151/1‑93 (MQ=255)
aaCTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACt > 1:1875694/1‑93 (MQ=255)
ttCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTgcg > 2:879511/1‑93 (MQ=255)
ttCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATACAACCAGACTgcg > 1:2108046/1‑93 (MQ=255)
ggAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGcgccgc > 1:673254/1‑93 (MQ=255)
ggAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGcgccgc > 2:299404/1‑93 (MQ=255)
ggAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGcgccgc > 1:3566796/1‑93 (MQ=255)
aaGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCt < 2:3597910/93‑1 (MQ=255)
aaGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCt < 1:2806561/93‑1 (MQ=255)
aGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCtt < 2:4084389/93‑1 (MQ=255)
gCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTc < 1:3016348/93‑1 (MQ=255)
cGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCa < 1:3922206/93‑1 (MQ=255)
ggTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCCCCGCCTTCAg < 2:3303753/93‑1 (MQ=255)
tAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGtt < 2:2505651/93‑1 (MQ=255)
aaaCGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGATTGCGCCGCCTTCAGttt < 2:2619458/93‑1 (MQ=255)
aaaCGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGttt < 2:2527472/93‑1 (MQ=255)
gTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTAcc > 2:2919434/1‑93 (MQ=255)
gTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTAcc < 2:2380337/93‑1 (MQ=255)
gTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTAca > 1:4416578/1‑92 (MQ=255)
tCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCa > 2:4244864/1‑93 (MQ=255)
tCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCa > 2:1079771/1‑93 (MQ=255)
cGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCaa < 2:701739/93‑1 (MQ=255)
ggCATGCGCAGTGTTGATCCAGAACTGGTAAAATATGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGACGCCTTCAGTATTACCaaa < 2:4353498/93‑1 (MQ=255)
ggCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCaaa < 1:2581002/93‑1 (MQ=255)
gCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAAt > 1:782503/1‑93 (MQ=255)
gCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAAt < 2:3368121/93‑1 (MQ=255)
aTCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAAttt < 2:2893683/93‑1 (MQ=255)
aTCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAAttt > 2:588503/1‑93 (MQ=255)
ccGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTgg < 2:965885/93‑1 (MQ=255)
ccGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTgg < 1:1042762/93‑1 (MQ=255)
ccGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTgg < 1:136365/93‑1 (MQ=255)
gCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTg > 1:4288540/1‑93 (MQ=255)
gCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTg > 1:2197226/1‑93 (MQ=255)
aGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGGTCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGcc > 2:3409922/1‑93 (MQ=255)
gtgtTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCa < 2:3364383/93‑1 (MQ=255)
gtgtTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCa > 2:48297/1‑93 (MQ=255)
gtgtTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCa > 2:48296/1‑93 (MQ=255)
tgtTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCAt > 2:2084343/1‑93 (MQ=255)
ttGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCt < 1:1544593/93‑1 (MQ=255)
tCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCtt > 2:1761632/1‑93 (MQ=255)
tCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCtt < 1:2618609/93‑1 (MQ=255)
tCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCtt > 1:835774/1‑93 (MQ=255)
cAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTa < 2:4471833/93‑1 (MQ=255)
aGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGACATCTGCTTTAg > 2:895311/1‑93 (MQ=255)
gAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGt > 1:4549102/1‑93 (MQ=255)
aaCTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTg < 2:752151/93‑1 (MQ=255)
aCTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGa < 2:1310457/93‑1 (MQ=255)
aCTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGa > 1:3732140/1‑93 (MQ=255)
cTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGAt > 2:3798604/1‑93 (MQ=255)
cTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGAt > 2:3905225/1‑93 (MQ=255)
tGGTAGGATTTGTACGGTCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATc < 1:3746036/93‑1 (MQ=255)
tGGTAGGATTTGTACGGGCTTGTTTTGTTTGGATCCAACCAGACTGAGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATc < 1:4080526/93‑1 (MQ=255)
tGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATc > 1:1753071/1‑93 (MQ=255)
ggTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCa < 2:3380229/93‑1 (MQ=255)
ggTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCa < 2:2428513/93‑1 (MQ=255)
ggTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCa > 1:3836803/1‑93 (MQ=255)
gTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCAg > 2:3513567/1‑93 (MQ=255)
gTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTCGGTGCCATCTGCTTTAGTGATCAg < 2:4449442/93‑1 (MQ=255)
|
AGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCAGC > NC_000913/1714390‑1714569
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCAGCGG > NC_000913/1714388‑1714571
|
CCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGA > SRR4302544.612211/1‑94 (MQ=60)
CAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGAT > SRR4302544.662719/1‑94 (MQ=60)
CAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGAT < SRR4302544.1642481/94‑1 (MQ=60)
AGGGGGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCTGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATT < SRR4302544.3813045/94‑1 (MQ=60)
AGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATT < SRR4302544.3813044/94‑1 (MQ=60)
GGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTT < SRR4302544.1067922/94‑1 (MQ=60)
GGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTT < SRR4302544.907245/94‑1 (MQ=60)
GGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTG < SRR4302544.4562663/94‑1 (MQ=60)
CGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTA > SRR4302544.2391646/1‑94 (MQ=60)
GTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTAC > SRR4302544.835857/1‑94 (MQ=60)
TCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCT > SRR4302544.4105921/1‑94 (MQ=60)
TCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCT < SRR4302544.4590524/94‑1 (MQ=60)
TTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTG < SRR4302544.125476/94‑1 (MQ=60)
CTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTG < SRR4302544.1633075/94‑1 (MQ=60)
CTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGT > SRR4302544.4778293/1‑94 (MQ=60)
CTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGT < SRR4302544.2252991/94‑1 (MQ=60)
TTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTT < SRR4302544.40270/94‑1 (MQ=60)
TCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTT > SRR4302544.700585/1‑94 (MQ=60)
TCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTT > SRR4302544.3471575/1‑94 (MQ=60)
CAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTT > SRR4302544.3797928/1‑94 (MQ=60)
AATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTC > SRR4302544.3770846/1‑94 (MQ=60)
ATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCT > SRR4302544.4679260/1‑94 (MQ=60)
GCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTC < SRR4302544.3670714/94‑1 (MQ=60)
CTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCG < SRR4302544.2423951/94‑1 (MQ=60)
catcaaggcgaagaactctcggaagccggtaatttttGCATCCGCATGGTTGATCCAGAACGGGTAGGATTTGTACGGGCTGGTTTTCTTCGGA < SRR4302544.3973293/57‑1 (MQ=45)
CATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGA < SRR4302544.3973292/94‑1 (MQ=60)
CATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGA < SRR4302544.3973291/94‑1 (MQ=60)
ATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGAT > SRR4302544.2825032/1‑94 (MQ=60)
AAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCC > SRR4302544.2184723/1‑94 (MQ=60)
AAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCC < SRR4302544.3840106/94‑1 (MQ=60)
AAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCA < SRR4302544.585211/94‑1 (MQ=60)
AAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCA < SRR4302544.127429/94‑1 (MQ=60)
AAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCA < SRR4302544.364903/94‑1 (MQ=60)
GAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAG < SRR4302544.3116077/94‑1 (MQ=60)
GAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAG > SRR4302544.1957925/1‑94 (MQ=60)
GAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAG > SRR4302544.678879/1‑94 (MQ=60)
AAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGA < SRR4302544.3414413/94‑1 (MQ=60)
GAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACT > SRR4302544.1893828/1‑94 (MQ=60)
AACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTG > SRR4302544.158986/1‑94 (MQ=60)
ACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGC < SRR4302544.3580249/94‑1 (MQ=60)
CTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATACAACCAGACTGCG > SRR4302544.2128323/1‑94 (MQ=60)
AGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGC > SRR4302544.3600992/1‑94 (MQ=60)
AGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGC > SRR4302544.679908/1‑94 (MQ=60)
AGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGC > SRR4302544.2171203/1‑94 (MQ=60)
AAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTT < SRR4302544.2833623/94‑1 (MQ=60)
GCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCA < SRR4302544.3045266/94‑1 (MQ=60)
CGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAG < SRR4302544.3961166/94‑1 (MQ=60)
AAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTT > SRR4302544.223353/1‑94 (MQ=60)
CGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACA > SRR4302544.4461161/1‑94 (MQ=60)
GTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCA > SRR4302544.3835880/1‑94 (MQ=60)
CGGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAA < SRR4302544.1939426/94‑1 (MQ=60)
GGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAAT > SRR4302544.790082/1‑94 (MQ=60)
GGCATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAAT < SRR4302544.2605806/94‑1 (MQ=60)
ATCCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTG > SRR4302544.2717507/1‑94 (MQ=60)
CCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGT < SRR4302544.1053103/94‑1 (MQ=60)
CCGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGT < SRR4302544.137652/94‑1 (MQ=60)
CGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTG > SRR4302544.4332339/1‑94 (MQ=60)
CGCAGTGTTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTG > SRR4302544.2217942/1‑94 (MQ=60)
TTGATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTG < SRR4302544.1559973/94‑1 (MQ=60)
ATCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTT > SRR4302544.844009/1‑94 (MQ=60)
TCCAGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTT < SRR4302544.2643739/94‑1 (MQ=60)
CAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTTGTGCCATCTTCTTTAT > SRR4302544.3893521/1‑94 (MQ=60)
AGAACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGT > SRR4302544.4594530/1‑94 (MQ=60)
AACTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGA > SRR4302544.3769248/1‑94 (MQ=60)
ACTTGTANGNTTTGTACGGGCNNNTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGAT < SRR4302544.2481490/94‑1 (MQ=60)
CTGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATC > SRR4302544.1770232/1‑94 (MQ=60)
TGGTAGGATTTGTACGGTCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCA < SRR4302544.3783247/94‑1 (MQ=60)
TGGTAGGATTTGTACGGGCTTGTTTTGTTTGGATCCAACCAGACTGAGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCA < SRR4302544.4121118/94‑1 (MQ=60)
TGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCA < SRR4302544.4294011/94‑1 (MQ=60)
TGGTAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCA > SRR4302544.3874849/1‑94 (MQ=60)
TAGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCAGCG > SRR4302544.2009938/1‑94 (MQ=60)
TAGGATTTGTACGGGCTGGGTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAAGGTGGTGCCATCTGCTTTAGTGATCAGCG > SRR4302544.2009937/1‑94 (MQ=60)
AGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCAGCGG > SRR4302544.187129/1‑94 (MQ=60)
AGGATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCAGCGG > SRR4302544.3484392/1‑94 (MQ=60)
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CCAGGGCGTTGATCTCTTCAATGCTCATAAAGGTGAAGAACTTCAGGAAGCGGTAAACGTCGGCATCCGCAGTGTTGATCCAGAACTGGTAGAATTTGTACGGGCTGGTTTTCTTCGGATCCAACCAGACTGCGCCGCCTTCAGTTTTACCAAATTTGGTGCCATCTGCTTTAGTGATCAGCGG > NC_000913/1714388‑1714571
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
