Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1357	179.3	9500450	96.1%	9129932	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,739,051	A→G	M373V (ATG→GTG)	ydhC →	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,739,051	0	A	G	100.0%	464.9 / NA	141	M373V (ATG→GTG)	ydhC	putative transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (81/60); total (81/60)

Only 100 of 147 total aligned reads displayed.

CTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAATGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATCA  >  NC_000913/1738961‑1739140

  gtgCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCt                                                                                       >  1:3849687/1‑93 (MQ=255)

    gCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTgg                                                                                     >  1:1509669/1‑93 (MQ=255)

    gCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTgg                                                                                     >  1:2376253/1‑93 (MQ=255)

    gCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTgg                                                                                     >  2:3981268/1‑93 (MQ=255)

     cTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGt                                                                                    <  1:1081059/93‑1 (MQ=255)

     cTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGt                                                                                    <  1:1081060/93‑1 (MQ=255)

      ttCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTc                                                                                   >  2:3700299/1‑93 (MQ=255)

      ttCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTc                                                                                   >  1:627790/1‑93 (MQ=255)

      ttCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTc                                                                                   <  1:3326242/93‑1 (MQ=255)

      ttCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTc                                                                                   <  2:1101820/93‑1 (MQ=255)

      ttCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTc                                                                                   >  2:2424419/1‑93 (MQ=255)

      ttCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTc                                                                                   >  2:926658/1‑93 (MQ=255)

         cTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTcgcg                                                                                <  2:286211/93‑1 (MQ=255)

           cGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCt                                                                              >  2:3849915/1‑93 (MQ=255)

           cGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCt                                                                              >  2:673949/1‑93 (MQ=255)

            gCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCTCGCTg                                                                             <  2:4709066/93‑1 (MQ=255)

            gCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTg                                                                             >  2:4363357/1‑93 (MQ=255)

            gCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTg                                                                             <  2:482064/93‑1 (MQ=255)

            gCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTg                                                                             >  2:813726/1‑93 (MQ=255)

            gCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTg                                                                             >  1:886142/1‑93 (MQ=255)

               aGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGt                                                                          <  1:673419/93‑1 (MQ=255)

               aGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGt                                                                          >  1:1320662/1‑93 (MQ=255)

                gTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGtt                                                                         <  1:3744324/93‑1 (MQ=255)

                gTCTGGTAGTTTACTGGCTGATCAGTATCAGCATGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGCGCTGGTCGCGCTGGGtg                                                                         >  2:2504787/1‑92 (MQ=255)

                 tCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTa                                                                        >  2:4468784/1‑93 (MQ=255)

                   tGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACa                                                                      >  2:3174042/1‑93 (MQ=255)

                      tAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACatga                                                                   <  1:3844783/93‑1 (MQ=255)

                      tAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACatga                                                                   >  1:1911961/1‑93 (MQ=255)

                      tAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACatga                                                                   >  2:3472570/1‑93 (MQ=255)

                       aGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACatgat                                                                  >  1:4311071/1‑93 (MQ=255)

                            ccTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAAc                                                             >  1:108947/1‑93 (MQ=255)

                              tGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGt                                                           >  2:965214/1‑93 (MQ=255)

                              tGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGt                                                           <  1:4747944/93‑1 (MQ=255)

                              tGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGt                                                           >  1:4535240/1‑93 (MQ=255)

                              tGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGt                                                           <  1:2507468/93‑1 (MQ=255)

                               ggCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGtt                                                          <  1:4376214/93‑1 (MQ=255)

                               ggCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGtt                                                          >  1:1897923/1‑93 (MQ=255)

                                  tGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAAAGTtgtg                                                       >  1:1017710/1‑93 (MQ=255)

                                   gATCAGTATCAGCACGCCATTGCCCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTga                                                      <  2:4096046/93‑1 (MQ=255)

                                      cAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTgaaga                                                   >  1:4076700/1‑93 (MQ=255)

                                      cAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTgaaga                                                   >  2:4259561/1‑93 (MQ=255)

                                       aGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTgaagaa                                                  <  2:531140/93‑1 (MQ=255)

                                       aGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTgaagaa                                                  <  1:1457473/93‑1 (MQ=255)

                                         tATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGt                                                >  1:3155896/1‑93 (MQ=255)

                                              gCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCt                                           >  2:4238252/1‑93 (MQ=255)

                                              gCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCt                                           >  2:3477563/1‑93 (MQ=255)

                                               cACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTg                                          <  1:2687958/93‑1 (MQ=255)

                                                aCGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGc                                         >  1:732353/1‑93 (MQ=255)

                                                  gCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCa                                       >  2:1969154/1‑93 (MQ=255)

                                                   ccATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAg                                      >  2:1911743/1‑93 (MQ=255)

                                                    cATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGa                                     >  2:2587150/1‑93 (MQ=255)

                                                    cATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGa                                     <  1:3651173/93‑1 (MQ=255)

                                                     aTTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGaa                                    <  2:2685434/93‑1 (MQ=255)

                                                     aTTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGaa                                    <  2:2685433/93‑1 (MQ=255)

                                                      ttGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAAt                                   >  1:4429228/1‑93 (MQ=255)

                                                      ttGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAAt                                   <  2:1316118/93‑1 (MQ=255)

                                                      ttGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAAt                                   >  2:1610041/1‑93 (MQ=255)

                                                       tGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATc                                  >  1:238634/1‑93 (MQ=255)

                                                         cTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCAt                                >  2:247114/1‑93 (MQ=255)

                                                         cTCACCACCACCAGCGTGATGGTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCAt                                <  1:1620475/93‑1 (MQ=255)

                                                          tCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATg                               <  1:2291639/93‑1 (MQ=255)

                                                          tCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATg                               >  1:408940/1‑93 (MQ=255)

                                                          tCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATg                               >  1:1585733/1‑93 (MQ=255)

                                                          tCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATg                               >  2:2174896/1‑93 (MQ=255)

                                                           caccaccacCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATgg                              >  2:3226629/1‑93 (MQ=255)

                                                             ccaccaccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCa                            >  1:1579460/1‑93 (MQ=255)

                                                              caccaccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCaa                           <  2:1726273/93‑1 (MQ=255)

                                                              caccaccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCaa                           <  1:80953/93‑1 (MQ=255)

                                                               accaccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAAt                          >  2:3990427/1‑93 (MQ=255)

                                                                ccaccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATg                         <  2:3038445/93‑1 (MQ=255)

                                                                ccaccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGCTGGCTGCCAGAATCATGGCAATg                         >  2:2204969/1‑93 (MQ=255)

                                                                 caccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGc                        <  1:1128429/93‑1 (MQ=255)

                                                                  accaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGcc                       >  2:2267338/1‑93 (MQ=255)

                                                                      gCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAg                   >  2:2381407/1‑93 (MQ=255)

                                                                      gCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAg                   <  1:647947/93‑1 (MQ=255)

                                                                      gCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAg                   >  2:3999088/1‑93 (MQ=255)

                                                                        gTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTc                 <  2:1115669/93‑1 (MQ=255)

                                                                         tGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCg                >  2:227631/1‑93 (MQ=255)

                                                                          gATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGc               >  2:4385575/1‑93 (MQ=255)

                                                                          gATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGc               >  1:609990/1‑93 (MQ=255)

                                                                          gATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGc               <  1:923745/93‑1 (MQ=255)

                                                                          gATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGc               <  2:1743089/93‑1 (MQ=255)

                                                                           aTGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCt              >  1:3273872/1‑93 (MQ=255)

                                                                             gtgaTCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCa            <  2:3826816/90‑1 (MQ=255)

                                                                             gTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCa            <  2:82689/93‑1 (MQ=255)

                                                                             gTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCa            >  2:2736311/1‑93 (MQ=255)

                                                                              ttATCAACAGTCGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCACTGCCGAAGTCGCTCAt           >  1:31962/1‑93 (MQ=255)

                                                                               tATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATa          <  1:2322808/93‑1 (MQ=255)

                                                                               tATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATa          <  2:370733/93‑1 (MQ=255)

                                                                               tATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATa          >  1:2726486/1‑93 (MQ=255)

                                                                                aTCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAg         <  2:3607052/93‑1 (MQ=255)

                                                                                aTCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAg         <  2:3607051/93‑1 (MQ=255)

                                                                                aTCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAg         <  2:1576873/93‑1 (MQ=255)

                                                                                 tCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGc        <  1:3298827/93‑1 (MQ=255)

                                                                                 tCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGc        >  1:3014510/1‑93 (MQ=255)

                                                                                 tCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGc        <  2:4109696/93‑1 (MQ=255)

                                                                                    aCAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGaa     >  1:4713120/1‑93 (MQ=255)

                                                                                      agtagtGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATc   >  2:4432392/1‑93 (MQ=255)

                                                                                       gTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATca  >  2:2357357/1‑93 (MQ=255)

                                                                                       gTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATca  >  1:4564750/1‑93 (MQ=255)

CTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAATGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATCA  >  NC_000913/1738961‑1739140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGTCTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAATGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATCA  >  NC_000913/1738958‑1739140

GGTCTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAG                                                                                           <  SRR4302544.343468/94‑1 (MQ=60)

 GTCTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGT                                                                                          >  SRR4302544.3298894/1‑94 (MQ=60)

  TCTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTG                                                                                         <  SRR4302544.1264444/94‑1 (MQ=60)

    TGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCT                                                                                       >  SRR4302544.3887899/1‑94 (MQ=60)

     GTGCTTCCTCGCCAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCCCCACCAGCGTGATGTTATCAACAGTAGTGCTG                                                                                      <  SRR4302544.4429080/94‑1 (MQ=60)

     GTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTG                                                                                      >  SRR4302544.1194911/1‑94 (MQ=60)

      TGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGG                                                                                     >  SRR4302544.1524635/1‑94 (MQ=60)

      TGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGG                                                                                     >  SRR4302544.2398752/1‑94 (MQ=60)

        CTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTC                                                                                   <  SRR4302544.1091809/94‑1 (MQ=60)

        CTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTC                                                                                   <  SRR4302544.1091810/94‑1 (MQ=60)

        CTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTC                                                                                   >  SRR4302544.633965/1‑94 (MQ=60)

         TTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCG                                                                                  <  SRR4302544.3357920/94‑1 (MQ=60)

              CGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTG                                                                             >  SRR4302544.894916/1‑94 (MQ=60)

              CGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTG                                                                             >  SRR4302544.1838369/1‑94 (MQ=60)

                CAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGG                                                                           >  SRR4302544.2351789/1‑94 (MQ=60)

                 AAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGT                                                                          >  SRR4302544.2873730/1‑94 (MQ=60)

                 AAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGT                                                                          >  SRR4302544.1333652/1‑94 (MQ=60)

                  AGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTT                                                                         <  SRR4302544.680075/94‑1 (MQ=60)

                   GTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTA                                                                        <  SRR4302544.3781526/94‑1 (MQ=60)

                        GTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGA                                                                   >  SRR4302544.1930437/1‑94 (MQ=60)

                         TAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGAT                                                                  >  SRR4302544.4355004/1‑94 (MQ=60)

                         TAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGAT                                                                  <  SRR4302544.3882927/94‑1 (MQ=60)

                              TCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCGACAGTAGTGATGGTCGCGCTGGGTTACATGATGCAAC                                                             >  SRR4302544.109940/1‑94 (MQ=60)

                              TCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAAC                                                             >  SRR4302544.109941/1‑94 (MQ=60)

                                CTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGT                                                           >  SRR4302544.4580592/1‑94 (MQ=60)

                                CTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGT                                                           >  SRR4302544.652832/1‑94 (MQ=60)

                                 TGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTT                                                          >  SRR4302544.1916264/1‑94 (MQ=60)

                                 TGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTT                                                          <  SRR4302544.3881595/94‑1 (MQ=60)

                                 TGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTT                                                          <  SRR4302544.4794712/94‑1 (MQ=60)

                                 TGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTT                                                          <  SRR4302544.2531509/94‑1 (MQ=60)

                                  GGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTG                                                         <  SRR4302544.4420571/94‑1 (MQ=60)

                                  GGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTG                                                         <  SRR4302544.26275/94‑1 (MQ=60)

                                    CTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAAAGTTGTG                                                       >  SRR4302544.1027869/1‑94 (MQ=60)

                                        TCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGA                                                   >  SRR4302544.4117268/1‑94 (MQ=60)

                                         CAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAA                                                  <  SRR4302544.4534184/94‑1 (MQ=60)

                                          AGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAG                                                 <  SRR4302544.1471946/94‑1 (MQ=60)

                                           GTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGT                                                >  SRR4302544.3185918/1‑94 (MQ=60)

                                           GTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGT                                                <  SRR4302544.2283024/94‑1 (MQ=60)

                                                  CACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGC                                         >  SRR4302544.739516/1‑94 (MQ=60)

                                                  CACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGC                                         <  SRR4302544.2713729/94‑1 (MQ=60)

                                                       CATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAA                                    <  SRR4302544.3687602/94‑1 (MQ=60)

                                                        ATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAAT                                   >  SRR4302544.4473919/1‑94 (MQ=60)

                                                         TTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATC                                  >  SRR4302544.241113/1‑94 (MQ=60)

                                                           GCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCAT                                <  SRR4302544.3382707/94‑1 (MQ=60)

                                                            CTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATG                               >  SRR4302544.1601387/1‑94 (MQ=60)

                                                            CTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATG                               >  SRR4302544.413104/1‑94 (MQ=60)

                                                            CTCACCACCACCAGCGTGATGGTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATG                               <  SRR4302544.1636436/94‑1 (MQ=60)

                                                             TCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGG                              <  SRR4302544.2313240/94‑1 (MQ=60)

                                                               ACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCA                            >  SRR4302544.1595070/1‑94 (MQ=60)

                                                               ACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCA                            >  SRR4302544.1595071/1‑94 (MQ=60)

                                                                 CACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAAT                          <  SRR4302544.81734/94‑1 (MQ=60)

                                                                    CACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCC                       <  SRR4302544.1139680/94‑1 (MQ=60)

                                                                        AGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAG                   <  SRR4302544.4692925/94‑1 (MQ=60)

                                                                         GCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGT                  <  SRR4302544.654347/94‑1 (MQ=60)

                                                                          CGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTC                 <  SRR4302544.4185781/94‑1 (MQ=60)

                                                                            TGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGC               >  SRR4302544.4035947/1‑94 (MQ=60)

                                                                            TGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGC               >  SRR4302544.615980/1‑94 (MQ=60)

                                                                             GATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCT              <  SRR4302544.932854/94‑1 (MQ=60)

                                                                             GATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCT              >  SRR4302544.3305087/1‑94 (MQ=60)

                                                                              ATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTC             <  SRR4302544.1494011/94‑1 (MQ=60)

                                                                               TGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCA            >  SRR4302544.598987/1‑94 (MQ=60)

                                                                                GTTATCAACAGTCGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCACTGCCGAAGTCGCTCAT           >  SRR4302544.32276/1‑94 (MQ=60)

                                                                                GTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCAT           <  SRR4302544.843158/94‑1 (MQ=60)

                                                                                 TTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATA          >  SRR4302544.2752749/1‑94 (MQ=60)

                                                                                  TATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAG         >  SRR4302544.3317044/1‑94 (MQ=60)

                                                                                  TATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAG         <  SRR4302544.2344829/94‑1 (MQ=60)

                                                                                   ATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGC        >  SRR4302544.3043409/1‑94 (MQ=60)

                                                                                    TCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCG       <  SRR4302544.3330249/94‑1 (MQ=60)

                                                                                    TCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCG       <  SRR4302544.701727/94‑1 (MQ=60)

                                                                                     CAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGA      >  SRR4302544.3208770/1‑94 (MQ=60)

                                                                                      AACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAA     >  SRR4302544.4759680/1‑94 (MQ=60)

                                                                                         AGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATCA  >  SRR4302544.4610264/1‑94 (MQ=60)

GGTCTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAATGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATCA  >  NC_000913/1738958‑1739140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`