Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,739,051	A→G	M373V (ATG→GTG)	ydhC →	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,739,051	0	A	G	99.6%	765.0 / NA	232	M373V (ATG→GTG)	ydhC	putative transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (118/113); minor base T (0/1); total (118/114)
Fisher's exact test for biased strand distribution p-value = 4.91e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 235 total aligned reads displayed.

TGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAATGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATCA  >  NC_000913/1738962‑1739140

tgtgCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGc                                                                                        >  2:2823602/1‑93 (MQ=255)

tgtgCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGc                                                                                        >  1:4294551/1‑93 (MQ=255)

 gtgCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCt                                                                                       >  1:4461494/1‑93 (MQ=255)

 gtgCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCt                                                                                       <  1:2296386/93‑1 (MQ=255)

 gtgCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCt                                                                                       >  1:5879086/1‑93 (MQ=255)

  tgCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTg                                                                                      >  2:5786698/1‑93 (MQ=255)

   gCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTgg                                                                                     >  2:624593/1‑93 (MQ=255)

    cTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGt                                                                                    <  2:5621885/93‑1 (MQ=255)

    cTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGt                                                                                    <  2:3163305/93‑1 (MQ=255)

     ttCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTc                                                                                   <  1:2132281/93‑1 (MQ=255)

      tCCTGGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCGCCACCAGCGTGATGTTATCAACAGTAGTGCTGGTcg                                                                                  <  1:1157591/93‑1 (MQ=255)

        cTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTcgcg                                                                                <  1:1915739/93‑1 (MQ=255)

        cTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTcgcg                                                                                >  2:1831827/1‑93 (MQ=255)

         tCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCgcgc                                                                               >  1:221691/1‑93 (MQ=255)

            cAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTgg                                                                            <  2:2197578/93‑1 (MQ=255)

            cAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTgg                                                                            >  2:6537073/1‑93 (MQ=255)

            cAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTgg                                                                            >  1:1020769/1‑93 (MQ=255)

             aaGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTggg                                                                           >  2:129436/1‑93 (MQ=255)

             aaGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTggg                                                                           <  2:1633912/93‑1 (MQ=255)

              aGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGt                                                                          <  2:1525226/93‑1 (MQ=255)

               gTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGtt                                                                         <  1:5453493/93‑1 (MQ=255)

               gTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGtt                                                                         >  2:4706658/1‑93 (MQ=255)

                tCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTa                                                                        <  2:3292652/93‑1 (MQ=255)

                  tGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACa                                                                      <  1:5045362/93‑1 (MQ=255)

                  tGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACa                                                                      <  2:59559/93‑1 (MQ=255)

                  tGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACa                                                                      <  1:1635866/93‑1 (MQ=255)

                   ggTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACat                                                                     >  1:2144855/1‑93 (MQ=255)

                    gTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACatg                                                                    >  2:2442950/1‑93 (MQ=255)

                     tAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACatga                                                                   <  1:5675730/93‑1 (MQ=255)

                     tAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACatga                                                                   >  1:1447233/1‑93 (MQ=255)

                      aGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACatgat                                                                  <  2:5997124/93‑1 (MQ=255)

                       gTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACatgatg                                                                 >  1:4029781/1‑93 (MQ=255)

                       gTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACatgatg                                                                 >  2:6585922/1‑93 (MQ=255)

                        tttCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGc                                                                >  1:3361081/1‑93 (MQ=255)

                          tCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCaa                                                              >  1:4257206/1‑93 (MQ=255)

                             tGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGt                                                           <  1:2973820/93‑1 (MQ=255)

                              ggCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGtt                                                          >  1:122717/1‑93 (MQ=255)

                              ggCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGtt                                                          >  1:4536760/1‑93 (MQ=255)

                              ggCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGtt                                                          <  1:3405612/93‑1 (MQ=255)

                              ggCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGtt                                                          >  2:2902423/1‑93 (MQ=255)

                              ggCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGtt                                                          >  1:3852270/1‑93 (MQ=255)

                               gCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTtg                                                         <  2:2134327/93‑1 (MQ=255)

                                cTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTtgt                                                        >  1:4810400/1‑93 (MQ=255)

                                cTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTtgt                                                        <  1:3725545/93‑1 (MQ=255)

                                cTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTtgt                                                        <  1:5236645/93‑1 (MQ=255)

                                  gATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTga                                                      >  2:673758/1‑93 (MQ=255)

                                  gATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTga                                                      >  2:1079747/1‑93 (MQ=255)

                                      aGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTgaagaa                                                  >  2:2040481/1‑93 (MQ=255)

                                      aGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTgaagaa                                                  >  1:3517878/1‑93 (MQ=255)

                                      aGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTgaagaa                                                  <  2:3103193/93‑1 (MQ=255)

                                        tATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGt                                                <  2:3335548/93‑1 (MQ=255)

                                          tCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTg                                              >  1:4710205/1‑93 (MQ=255)

                                           cAGCACGCCATTGCTTACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTgg                                             <  2:3799687/93‑1 (MQ=255)

                                           cAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTgg                                             >  1:4987138/1‑93 (MQ=255)

                                             gCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCt                                           <  2:4519438/93‑1 (MQ=255)

                                                cGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGcc                                        <  1:1518404/93‑1 (MQ=255)

                                                    aTTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAgca                                    >  2:2344467/1‑91 (MQ=255)

                                                     ttGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAAt                                   >  1:285405/1‑93 (MQ=255)

                                                     ttGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAAt                                   >  1:1827697/1‑93 (MQ=255)

                                                        cTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCAt                                <  1:484335/93‑1 (MQ=255)

                                                         tCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATg                               >  1:824120/1‑93 (MQ=255)

                                                           accaccaccAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGc                             <  1:3590042/93‑1 (MQ=255)

                                                            ccaccaccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCa                            >  2:6644992/1‑93 (MQ=255)

                                                            ccaccaccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCa                            >  1:912996/1‑93 (MQ=255)

                                                            ccaccaccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCa                            <  2:5120190/93‑1 (MQ=255)

                                                             caccaccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCaa                           <  2:3644816/93‑1 (MQ=255)

                                                              cccaccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAAt                          <  1:3614030/92‑1 (MQ=255)

                                                              accaccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAAt                          <  1:611961/93‑1 (MQ=255)

                                                               ccaccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATg                         >  1:1604509/1‑93 (MQ=255)

                                                                  ccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCg                      >  2:5236105/1‑93 (MQ=255)

                                                                  ccaGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCg                      >  2:4850283/1‑93 (MQ=255)

                                                                   caGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGa                     >  1:6198130/1‑93 (MQ=255)

                                                                   caGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGa                     <  1:4434385/93‑1 (MQ=255)

                                                                    aGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGaa                    <  1:1732534/93‑1 (MQ=255)

                                                                     gCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAg                   >  2:5267754/1‑93 (MQ=255)

                                                                      cGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGt                  <  1:2732992/93‑1 (MQ=255)

                                                                      cGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGt                  <  1:1369771/93‑1 (MQ=255)

                                                                       gTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTc                 <  2:5405864/93‑1 (MQ=255)

                                                                        tGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCg                <  1:6415361/93‑1 (MQ=255)

                                                                        tGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCg                <  2:2467337/93‑1 (MQ=255)

                                                                         gATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGc               <  2:877620/93‑1 (MQ=255)

                                                                          aTGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCt              <  2:6107972/93‑1 (MQ=255)

                                                                            gTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCa            >  1:6697142/1‑93 (MQ=255)

                                                                             ttATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCAt           <  1:3334660/93‑1 (MQ=255)

                                                                               aTCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAg         >  2:1324747/1‑93 (MQ=255)

                                                                               aTCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAg         <  2:6341190/93‑1 (MQ=255)

                                                                               aTCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAg         >  2:6301848/1‑93 (MQ=255)

                                                                                tCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGc        >  1:2536923/1‑93 (MQ=255)

                                                                                 cAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCg       <  1:5914681/93‑1 (MQ=255)

                                                                                   aCAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGaa     >  2:1470734/1‑93 (MQ=255)

                                                                                   aCAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGaa     <  1:3194628/93‑1 (MQ=255)

                                                                                   aCAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGaa     <  1:5087270/93‑1 (MQ=255)

                                                                                   aCAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGaa     >  2:3979133/1‑93 (MQ=255)

                                                                                    cAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAAt    <  1:1497551/93‑1 (MQ=255)

                                                                                    cAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAAt    <  2:2254639/93‑1 (MQ=255)

                                                                                      gTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGGTCATAGCGAATca  >  2:3801822/1‑93 (MQ=255)

                                                                                      gTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATca  >  2:2669609/1‑93 (MQ=255)

                                                                                      gTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATca  >  2:3454200/1‑93 (MQ=255)

                                                                                      gTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATca  >  2:1435697/1‑93 (MQ=255)

                                                                                      gTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATca  >  2:4300433/1‑93 (MQ=255)

TGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAATGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATCA  >  NC_000913/1738962‑1739140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGTCTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAATGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATCACACT  >  NC_000913/1738958‑1739144

GGTCTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAG                                                                                               <  SRR4302536.2785340/94‑1 (MQ=60)

GGTCTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAG                                                                                               <  SRR4302536.1206972/94‑1 (MQ=60)

 GTCTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGT                                                                                              >  SRR4302536.5449556/1‑94 (MQ=60)

 GTCTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGT                                                                                              <  SRR4302536.850020/94‑1 (MQ=60)

 GTCTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGT                                                                                              >  SRR4302536.5360592/1‑94 (MQ=60)

   CTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGC                                                                                            >  SRR4302536.4422894/1‑94 (MQ=60)

    TGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCT                                                                                           >  SRR4302536.6054213/1‑94 (MQ=60)

    TGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCT                                                                                           >  SRR4302536.4595556/1‑94 (MQ=60)

     GTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTG                                                                                          <  SRR4302536.2366077/94‑1 (MQ=60)

        CTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTC                                                                                       >  SRR4302536.3661486/1‑94 (MQ=60)

        CTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTC                                                                                       >  SRR4302536.1556570/1‑94 (MQ=60)

        CTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGCGATGTTATCAACAGTAGTGCTGGTC                                                                                       <  SRR4302536.6657522/94‑1 (MQ=60)

         TTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCG                                                                                      <  SRR4302536.2196286/94‑1 (MQ=60)

          TCCTGGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCGCCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGC                                                                                     <  SRR4302536.1192431/94‑1 (MQ=60)

           CCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCG                                                                                    >  SRR4302536.770694/1‑94 (MQ=60)

            CTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGC                                                                                   >  SRR4302536.227569/1‑94 (MQ=60)

            CTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGC                                                                                   <  SRR4302536.1973351/94‑1 (MQ=60)

            CTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGC                                                                                   >  SRR4302536.6624947/1‑94 (MQ=60)

            CTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGC                                                                                   >  SRR4302536.1522693/1‑94 (MQ=60)

              CGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTG                                                                                 >  SRR4302536.4568989/1‑94 (MQ=60)

               GCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGG                                                                                >  SRR4302536.1050988/1‑94 (MQ=60)

               GCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGG                                                                                <  SRR4302536.496659/94‑1 (MQ=60)

                CAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGG                                                                               <  SRR4302536.1557547/94‑1 (MQ=60)

                 AAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGT                                                                              <  SRR4302536.3436618/94‑1 (MQ=60)

                 AAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGT                                                                              >  SRR4302536.5320704/1‑94 (MQ=60)

                  AGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTT                                                                             <  SRR4302536.943112/94‑1 (MQ=60)

                  AGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTT                                                                             <  SRR4302536.6211046/94‑1 (MQ=60)

                   GTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTA                                                                            <  SRR4302536.5616597/94‑1 (MQ=60)

                     CTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACA                                                                          >  SRR4302536.1636650/1‑94 (MQ=60)

                     CTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACA                                                                          >  SRR4302536.5951771/1‑94 (MQ=60)

                     CTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACA                                                                          <  SRR4302536.5520540/94‑1 (MQ=60)

                      TGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACAT                                                                         <  SRR4302536.5196558/94‑1 (MQ=60)

                      TGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACAT                                                                         <  SRR4302536.489809/94‑1 (MQ=60)

                      TGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACAT                                                                         >  SRR4302536.2209228/1‑94 (MQ=60)

                      TGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACAT                                                                         <  SRR4302536.1683496/94‑1 (MQ=60)

                        GTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGA                                                                       >  SRR4302536.1490117/1‑94 (MQ=60)

                         TAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGAT                                                                      >  SRR4302536.1862629/1‑94 (MQ=60)

                         TAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGAT                                                                      <  SRR4302536.5844471/94‑1 (MQ=60)

                          AGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATG                                                                     >  SRR4302536.4149303/1‑94 (MQ=60)

                           GTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGC                                                                    >  SRR4302536.3460871/1‑94 (MQ=60)

                             TTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAA                                                                  >  SRR4302536.4384036/1‑94 (MQ=60)

                               CCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTGCATGATGCAACG                                                                >  SRR4302536.2880473/1‑94 (MQ=60)

                               CCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACG                                                                <  SRR4302536.1423763/94‑1 (MQ=60)

                                CTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGT                                                               >  SRR4302536.3106184/1‑94 (MQ=60)

                                 TGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTT                                                              <  SRR4302536.3061382/94‑1 (MQ=60)

                                 TGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTT                                                              >  SRR4302536.3966944/1‑94 (MQ=60)

                                 TGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTT                                                              >  SRR4302536.125957/1‑94 (MQ=60)

                                 TGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTT                                                              >  SRR4302536.4672797/1‑94 (MQ=60)

                                  GGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTG                                                             <  SRR4302536.3506902/94‑1 (MQ=60)

                                   GCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGT                                                            >  SRR4302536.4955163/1‑94 (MQ=60)

                                   GCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGT                                                            >  SRR4302536.3173714/1‑94 (MQ=60)

                                   GCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGT                                                            <  SRR4302536.957167/94‑1 (MQ=60)

                                    CTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTG                                                           <  SRR4302536.5392666/94‑1 (MQ=60)

                                    CTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTG                                                           <  SRR4302536.3836906/94‑1 (MQ=60)

                                     TGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGA                                                          >  SRR4302536.6486401/1‑94 (MQ=60)

                                     TGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGA                                                          >  SRR4302536.3717400/1‑94 (MQ=60)

                                     TGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGA                                                          >  SRR4302536.2176977/1‑94 (MQ=60)

                                      GATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAA                                                         <  SRR4302536.3060891/94‑1 (MQ=60)

                                        TCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGA                                                       >  SRR4302536.4686867/1‑94 (MQ=60)

                                         CAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAA                                                      >  SRR4302536.3622957/1‑94 (MQ=60)

                                          AGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAG                                                     >  SRR4302536.3338360/1‑94 (MQ=60)

                                            TATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTT                                                   <  SRR4302536.4315153/94‑1 (MQ=60)

                                             ATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTG                                                  >  SRR4302536.4851883/1‑94 (MQ=60)

                                             ATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTG                                                  <  SRR4302536.209224/94‑1 (MQ=60)

                                              TCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGG                                                 >  SRR4302536.5136860/1‑94 (MQ=60)

                                              TCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGG                                                 <  SRR4302536.93709/94‑1 (MQ=60)

                                                AGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCT                                               <  SRR4302536.6065754/94‑1 (MQ=60)

                                                AGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCT                                               >  SRR4302536.1670614/1‑94 (MQ=60)

                                                AGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCT                                               >  SRR4302536.6352340/1‑94 (MQ=60)

                                                AGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCT                                               <  SRR4302536.3977155/94‑1 (MQ=60)

                                                   ACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCC                                            >  SRR4302536.3471167/1‑94 (MQ=60)

                                                    CGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCA                                           <  SRR4302536.1563094/94‑1 (MQ=60)

                                                     GCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAG                                          <  SRR4302536.2582807/94‑1 (MQ=60)

                                                     GCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGATGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAG                                          <  SRR4302536.3730374/94‑1 (MQ=60)

                                                      CCATTGCTCACCACCACCAGCGTGATGTTATCACCAGAAGTGCTGGCGGGCCGGGGTTAATTGATGCAACGTTGTGAAGAGGTTGGCTGCCAGA                                         >  SRR4302536.2502975/1‑94 (MQ=32)

                                                      CCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGA                                         >  SRR4302536.4463380/1‑94 (MQ=60)

                                                       CATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAA                                        <  SRR4302536.1222570/94‑1 (MQ=60)

                                                       CATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAA                                        >  SRR4302536.2928820/1‑94 (MQ=60)

                                                       CATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAA                                        >  SRR4302536.624632/1‑94 (MQ=60)

                                                        ATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAAT                                       >  SRR4302536.292997/1‑94 (MQ=60)

                                                        ATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAAT                                       <  SRR4302536.4439858/94‑1 (MQ=60)

                                                        ATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAAT                                       >  SRR4302536.1882813/1‑94 (MQ=60)

                                                          TTCTCACCACCCCCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGGTGTGAAGAAGTTGGCCGCCAGAATCA                                     <  SRR4302536.3466217/94‑1 (MQ=60)

                                                          TGCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCA                                     <  SRR4302536.5727905/94‑1 (MQ=60)

                                                           GCTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCAT                                    >  SRR4302536.4670513/1‑94 (MQ=60)

                                                            CTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATG                                   >  SRR4302536.848374/1‑94 (MQ=60)

                                                            CTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATG                                   <  SRR4302536.496907/94‑1 (MQ=60)

                                                            CTCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATG                                   <  SRR4302536.3887461/94‑1 (MQ=60)

                                                             TCACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGG                                  >  SRR4302536.5159529/1‑94 (MQ=60)

                                                               ACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCA                                >  SRR4302536.939917/1‑94 (MQ=60)

                                                               ACCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCA                                <  SRR4302536.3697432/94‑1 (MQ=60)

                                                                CCACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAA                               <  SRR4302536.5230442/94‑1 (MQ=60)

                                                                  CCCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATG                             <  SRR4302536.3722073/94‑1 (MQ=60)

                                                                  ACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATG                             <  SRR4302536.630234/94‑1 (MQ=60)

                                                                  ACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATG                             >  SRR4302536.5105061/1‑94 (MQ=60)

                                                                  ACCACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATG                             >  SRR4302536.1651322/1‑94 (MQ=60)

                                                                     ACCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCG                          <  SRR4302536.3998879/94‑1 (MQ=60)

                                                                      CCAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGA                         >  SRR4302536.6382745/1‑94 (MQ=60)

                                                                       CAGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAA                        <  SRR4302536.4567392/94‑1 (MQ=60)

                                                                        AGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAG                       >  SRR4302536.2314697/1‑94 (MQ=60)

                                                                        AGCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAG                       <  SRR4302536.1782532/94‑1 (MQ=60)

                                                                         GCGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGT                      <  SRR4302536.2221949/94‑1 (MQ=60)

                                                                          CGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTC                     <  SRR4302536.1754631/94‑1 (MQ=60)

                                                                          CGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTC                     <  SRR4302536.518229/94‑1 (MQ=60)

                                                                          CGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTC                     <  SRR4302536.1410595/94‑1 (MQ=60)

                                                                          CGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTC                     <  SRR4302536.4384883/94‑1 (MQ=60)

                                                                          CGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTC                     <  SRR4302536.2814446/94‑1 (MQ=60)

                                                                          CGTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTC                     >  SRR4302536.2789490/1‑94 (MQ=60)

                                                                           GTGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCG                    >  SRR4302536.1056050/1‑94 (MQ=60)

                                                                            TGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGC                   <  SRR4302536.6607069/94‑1 (MQ=60)

                                                                            TGATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGC                   >  SRR4302536.5622723/1‑94 (MQ=60)

                                                                              ATGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTC                 >  SRR4302536.1736151/1‑94 (MQ=60)

                                                                              ATGTTACCAACAGTAGTGCTGGTCGCGATAGGATACATGAAGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATAGCAATGCCTAAGTCGCTC                 <  SRR4302536.1914773/94‑1 (MQ=60)

                                                                               TGTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCA                >  SRR4302536.6896065/1‑94 (MQ=60)

                                                                                GTTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCAT               <  SRR4302536.1272859/94‑1 (MQ=60)

                                                                                 TTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATA              <  SRR4302536.5027162/94‑1 (MQ=60)

                                                                                 TTATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATA              <  SRR4302536.3433406/94‑1 (MQ=60)

                                                                                   ATCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGC            >  SRR4302536.2613353/1‑94 (MQ=60)

                                                                                    TCAACAGTATTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCG           <  SRR4302536.2197070/94‑1 (MQ=60)

                                                                                    TCAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCG           <  SRR4302536.1890871/94‑1 (MQ=60)

                                                                                     CAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGA          <  SRR4302536.6090853/94‑1 (MQ=60)

                                                                                     CAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGA          >  SRR4302536.3699562/1‑94 (MQ=60)

                                                                                     CAACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGA          >  SRR4302536.4713335/1‑94 (MQ=60)

                                                                                       ACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAAT        <  SRR4302536.3482676/94‑1 (MQ=60)

                                                                                       ACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAAT        <  SRR4302536.3288273/94‑1 (MQ=60)

                                                                                       ACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAAT        <  SRR4302536.5239456/94‑1 (MQ=60)

                                                                                       ACAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAAT        >  SRR4302536.2355549/1‑94 (MQ=60)

                                                                                        CAGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATC       <  SRR4302536.1541742/94‑1 (MQ=60)

                                                                                         AGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATCA      >  SRR4302536.3533671/1‑94 (MQ=60)

                                                                                         AGTAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATCA      <  SRR4302536.1362693/94‑1 (MQ=60)

                                                                                           TAGTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATCACA    <  SRR4302536.2748998/94‑1 (MQ=60)

                                                                                            AGTGCTTGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATCACAC   >  SRR4302536.2227042/1‑94 (MQ=60)

                                                                                             GTGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATCACACT  <  SRR4302536.2525163/94‑1 (MQ=60)

GGTCTGTGCTTCCTCGCAAGTCTGGTAGTTTCCTGGCTGATCAGTATCAGCACGCCATTGCTCACCACCACCAGCGTGATGTTATCAACAGTAATGCTGGTCGCGCTGGGTTACATGATGCAACGTTGTGAAGAAGTTGGCTGCCAGAATCATGGCAATGCCGAAGTCGCTCATAGCGAATCACACT  >  NC_000913/1738958‑1739144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`