Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,751,328 |
A→G |
M176T (ATG→ACG) |
b1673 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,751,328 | 0 | A | G | 98.5%
| 429.5
/ ‑2.6
| 137 | M176T (ATG→ACG) | b1673 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (72/63); total (73/64) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.95e-01 |
Only 100 of 141 total aligned reads displayed.
TCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTC > NC_000913/1751239‑1751417
|
tCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGc > 2:2981006/1‑93 (MQ=255)
cGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGcc < 2:3422284/93‑1 (MQ=255)
cGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGcc < 1:1577093/93‑1 (MQ=255)
cGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGcc < 1:3945038/93‑1 (MQ=255)
cGTCCCTCTAAACGCAATCGCTTGCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGcc < 1:3945039/93‑1 (MQ=255)
gTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCa > 1:2112330/1‑93 (MQ=255)
tCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCag > 2:166169/1‑93 (MQ=255)
tCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCag > 1:3771703/1‑93 (MQ=255)
cccTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCaga > 2:3185514/1‑93 (MQ=255)
cccTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCaga < 2:3945070/93‑1 (MQ=255)
cccTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCaga > 2:3185513/1‑93 (MQ=255)
ccTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagag > 2:3871910/1‑93 (MQ=255)
ccTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagag < 1:3397711/93‑1 (MQ=255)
cTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagaga < 1:579574/93‑1 (MQ=255)
cTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagaga < 2:1106250/93‑1 (MQ=255)
tCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagagaga > 2:2927160/1‑93 (MQ=255)
tCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagagaga < 1:881161/93‑1 (MQ=255)
tCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagagaga < 1:2590037/93‑1 (MQ=255)
cAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagagagag < 2:2931237/93‑1 (MQ=255)
aaCCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAgg < 2:3066878/93‑1 (MQ=255)
aCCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCTCACCGCCGCTGTGGTTACGGCTATTCAACATTCCATAGAGAGGa > 2:3775317/1‑93 (MQ=255)
aCCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGa > 2:3775467/1‑93 (MQ=255)
aCCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGa > 2:41251/1‑93 (MQ=255)
ccGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGaa < 1:2402409/93‑1 (MQ=255)
ccGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGaa < 1:2406406/93‑1 (MQ=255)
cGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAAc > 1:1749649/1‑93 (MQ=255)
aaTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAg > 2:2526581/1‑93 (MQ=255)
aTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAgg > 2:139429/1‑93 (MQ=255)
aTCGCTTTCAGGTTTTTCGAACCCATTAGTGCGCCAGTTCCCGCCCCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAgg < 2:2640586/93‑1 (MQ=255)
tCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGt < 2:43246/93‑1 (MQ=255)
tCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGt > 2:368440/1‑93 (MQ=255)
tCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGt > 1:3315585/1‑93 (MQ=255)
tgCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGtt < 2:4087721/92‑1 (MQ=255)
gCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGttt > 1:433173/1‑93 (MQ=255)
cTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGtttt > 1:512276/1‑93 (MQ=255)
tttCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTc > 2:3883751/1‑93 (MQ=255)
tCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTccc < 2:4074910/93‑1 (MQ=255)
tCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTccc > 2:3358466/1‑93 (MQ=255)
tCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTccc > 2:3411570/1‑93 (MQ=255)
cAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTcccc > 1:4728087/1‑93 (MQ=255)
ggTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAg > 1:1568658/1‑93 (MQ=255)
ggTTTTCCGACCCCATTATGGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAg < 2:1281010/93‑1 (MQ=255)
tttttCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGcc < 2:4627680/93‑1 (MQ=255)
ttttCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGCGAGAGGAACAAGGTTTTCACCAGCCt > 2:2538721/1‑93 (MQ=255)
ttttCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCt < 1:3452941/93‑1 (MQ=255)
tttCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTg > 1:4179700/1‑93 (MQ=255)
aaCCCATTATGGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCaa < 1:2348003/93‑1 (MQ=255)
aCCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAt < 1:2263967/93‑1 (MQ=255)
aCCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAt > 1:168821/1‑93 (MQ=255)
cccATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATa > 2:773867/1‑93 (MQ=255)
cccATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATa < 1:676302/93‑1 (MQ=255)
ccATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAg > 1:198646/1‑93 (MQ=255)
cATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgc < 2:1501193/93‑1 (MQ=255)
cATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgc < 1:618192/93‑1 (MQ=255)
attattGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgcc > 1:3362625/1‑93 (MQ=255)
attattGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgcc > 2:3181159/1‑93 (MQ=255)
attattGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgcc > 2:4259223/1‑93 (MQ=255)
ttattGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTACCCAGCCTGACCAATAgccg < 2:3339849/93‑1 (MQ=255)
gcCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcacaca > 1:2991519/1‑93 (MQ=255)
gcCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcacaca > 1:2991520/1‑93 (MQ=255)
gcCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcacaca > 2:1740841/1‑93 (MQ=255)
gcCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcacaca < 1:1113172/93‑1 (MQ=255)
ccAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAg < 2:2222009/93‑1 (MQ=255)
cAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAgg > 1:4656207/1‑93 (MQ=255)
aGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGt > 1:908358/1‑93 (MQ=255)
ttCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACCAGGTTTTCCCCAGCCTGACCAATAGCCGCCACCCAggatc > 2:3954227/1‑90 (MQ=255)
tCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGCGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTc < 2:2696314/93‑1 (MQ=255)
tCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTc < 2:2671307/93‑1 (MQ=255)
tCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTc < 2:2968074/93‑1 (MQ=255)
tCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTc < 1:1458400/93‑1 (MQ=255)
cccGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTcc < 1:3626810/93‑1 (MQ=255)
ccGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCg < 2:3359779/93‑1 (MQ=255)
gCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGa < 1:1136663/93‑1 (MQ=255)
aCCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACt > 2:2878559/1‑93 (MQ=255)
aCCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACt > 2:1000089/1‑93 (MQ=255)
ccgccgCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACta < 2:2776291/93‑2 (MQ=255)
cgccgcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACtag > 1:1836007/1‑91 (MQ=255)
gcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCaa > 2:4442770/1‑93 (MQ=255)
gcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCaa > 2:4442769/1‑93 (MQ=255)
gcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCaa > 2:1958349/1‑93 (MQ=255)
gcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCaa < 1:2018498/93‑1 (MQ=255)
cTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAAt < 2:1664491/93‑1 (MQ=255)
tgGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGa > 1:3916965/1‑93 (MQ=255)
gTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACa > 2:4602950/1‑93 (MQ=255)
gTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACa > 2:445319/1‑93 (MQ=255)
ttACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACaa > 1:1640585/1‑93 (MQ=255)
aCGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAAt > 2:1065376/1‑93 (MQ=255)
cGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAAtt < 1:2843431/93‑1 (MQ=255)
ggCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAAttt < 1:1988658/93‑1 (MQ=255)
ggCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAAttt < 2:3903359/93‑1 (MQ=255)
ggCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAAttt < 2:1138291/93‑1 (MQ=255)
cTATTCAACGTGCGAGTGAGATGAACAAGGTTTGCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATttct < 2:2276297/93‑1 (MQ=255)
tATTCAACGTGCCAGCGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGACGCCACACAGGTTTCCGGACTGGTCAATCGACAAATttctc > 2:2862983/1‑92 (MQ=255)
tATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATttctt > 2:2641646/1‑93 (MQ=255)
tATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATttctt > 2:3652139/1‑93 (MQ=255)
aTTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATttcttc < 1:1711035/93‑1 (MQ=255)
ttCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTcc > 2:549380/1‑93 (MQ=255)
tCAACGTGCCAGAGAGAGGAACAAGGTCTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCcg > 1:390612/1‑93 (MQ=255)
aaCGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCcgtc > 1:4395403/1‑93 (MQ=255)
aaCGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCcgtc > 2:2311528/1‑93 (MQ=255)
|
TCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTC > NC_000913/1751239‑1751417
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTT > NC_000913/1751235‑1751420
|
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACG > SRR4302544.657669/1‑94 (MQ=60)
CTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGT > SRR4302544.1807380/1‑94 (MQ=60)
TTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTG < SRR4302544.2824265/94‑1 (MQ=60)
CGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCA < SRR4302544.3984236/94‑1 (MQ=60)
CGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCA < SRR4302544.2297147/94‑1 (MQ=60)
CGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCA < SRR4302544.1592681/94‑1 (MQ=60)
CGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCA > SRR4302544.2132637/1‑94 (MQ=60)
CGTCCCTCTAAACGCAATCGCTTGCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCA < SRR4302544.3984237/94‑1 (MQ=60)
GTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAG > SRR4302544.3809087/1‑94 (MQ=60)
TCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGA > SRR4302544.3308272/1‑94 (MQ=60)
CCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGA < SRR4302544.3430200/94‑1 (MQ=60)
CTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAG < SRR4302544.585236/94‑1 (MQ=60)
CTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAG < SRR4302544.347994/94‑1 (MQ=60)
CTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAG < SRR4302544.485791/94‑1 (MQ=60)
TCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAG < SRR4302544.39751/94‑1 (MQ=60)
TCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAG < SRR4302544.2614956/94‑1 (MQ=60)
TCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAG < SRR4302544.889896/94‑1 (MQ=60)
CAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTNCCCGCACCGCCGCTGTGGTTANGNNNNTTNAACGTGCNANAGAGNNN > SRR4302544.1530206/1‑94 (MQ=60)
CCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAAC > SRR4302544.1766775/1‑94 (MQ=60)
CCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAAC < SRR4302544.2425205/94‑1 (MQ=60)
CCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAAC < SRR4302544.2429253/94‑1 (MQ=60)
ATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGT > SRR4302544.3347159/1‑94 (MQ=60)
CGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTT > SRR4302544.3752537/1‑94 (MQ=60)
CGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTT > SRR4302544.437549/1‑94 (MQ=60)
GCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTT > SRR4302544.517330/1‑94 (MQ=60)
TCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCC > SRR4302544.4774745/1‑94 (MQ=60)
AGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAG > SRR4302544.1584193/1‑94 (MQ=60)
TTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTG < SRR4302544.3485905/94‑1 (MQ=60)
TTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTG > SRR4302544.4221097/1‑94 (MQ=60)
AACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAT > SRR4302544.170487/1‑94 (MQ=60)
AACCCATTATGGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAT < SRR4302544.2370245/94‑1 (MQ=60)
ACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATA < SRR4302544.2285263/94‑1 (MQ=60)
CCCATTATTTCGCCAGTCCCCGCACCGCCGCTGTGGTTACGCCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAG < SRR4302544.682999/94‑1 (MQ=60)
CCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAG > SRR4302544.200653/1‑94 (MQ=60)
CCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAG < SRR4302544.683001/94‑1 (MQ=60)
CCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGC > SRR4302544.1762937/1‑94 (MQ=60)
CATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCC > SRR4302544.2591722/1‑94 (MQ=60)
CATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCC > SRR4302544.3394716/1‑94 (MQ=60)
CATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCC < SRR4302544.624264/94‑1 (MQ=60)
CGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACA > SRR4302544.3020204/1‑94 (MQ=60)
CGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACA > SRR4302544.3020205/1‑94 (MQ=60)
CGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACA > SRR4302544.4696467/1‑94 (MQ=60)
GCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAG < SRR4302544.1124276/94‑1 (MQ=60)
CCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGG > SRR4302544.4702279/1‑94 (MQ=60)
CAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGT > SRR4302544.917337/1‑94 (MQ=60)
TTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTC < SRR4302544.1900510/94‑1 (MQ=60)
TCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCC < SRR4302544.1472881/94‑1 (MQ=60)
CCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCG < SRR4302544.3662940/94‑1 (MQ=60)
GCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGAC < SRR4302544.1147970/94‑1 (MQ=60)
CCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAG > SRR4302544.1853837/1‑94 (MQ=60)
GCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTC < SRR4302544.2995103/94‑1 (MQ=60)
CGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAA > SRR4302544.900345/1‑94 (MQ=60)
GCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAAT < SRR4302544.2038097/94‑1 (MQ=60)
GTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGA > SRR4302544.3955866/1‑94 (MQ=60)
TGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGAC > SRR4302544.2039813/1‑94 (MQ=60)
GTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAA > SRR4302544.1656751/1‑94 (MQ=60)
CGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTT < SRR4302544.2870876/94‑1 (MQ=60)
CGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTT > SRR4302544.4055706/1‑94 (MQ=60)
CGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTT < SRR4302544.1553971/94‑1 (MQ=60)
GGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTC < SRR4302544.2007963/94‑1 (MQ=60)
ATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCC < SRR4302544.1727880/94‑1 (MQ=60)
TTCAACGTGCCAGAGAGAGGAACAAGGTCTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCCG > SRR4302544.394575/1‑94 (MQ=60)
CAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCCGTC > SRR4302544.4439849/1‑94 (MQ=60)
AACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCCGTCG < SRR4302544.1656303/94‑1 (MQ=60)
CGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCCGTCGTT < SRR4302544.1367738/94‑1 (MQ=60)
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CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTT > NC_000913/1751235‑1751420
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
