Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,751,328 A→G M176T (ATG→ACG)  b1673 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,751,3280AG100.0% 715.1 / NA 219M176T (ATG→ACG) b1673hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (111/108);  total (111/108)

Only 100 of 222 total aligned reads displayed.

TTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTC  >  NC_000913/1751238‑1751417
                                                                                          |                                                                                         
  cGTCCCTTCAACCGCAATCTCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGcc                                                                                       <  1:4445714/93‑1 (MQ=255)
   gTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTTTTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCa                                                                                      >  2:3564240/1‑93 (MQ=255)
    tCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCag                                                                                     >  1:5729318/1‑93 (MQ=255)
     cccTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCaga                                                                                    <  1:345634/93‑1 (MQ=255)
      ccTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagag                                                                                   <  1:5872714/93‑1 (MQ=255)
       cTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagagg                                                                                  >  2:6677278/1‑92 (MQ=255)
       cTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagaga                                                                                  <  2:2231629/93‑1 (MQ=255)
        ttCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagagag                                                                                 >  2:2750663/1‑93 (MQ=255)
        ttCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagagag                                                                                 >  2:3903730/1‑93 (MQ=255)
          cAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCagagagag                                                                               <  1:784163/93‑1 (MQ=255)
           aaCCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAgg                                                                              <  1:4131365/93‑1 (MQ=255)
           aaCCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAgg                                                                              >  2:3773429/1‑93 (MQ=255)
            aacGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGa                                                                             <  2:1455903/91‑1 (MQ=255)
            aCCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGa                                                                             <  2:2916529/93‑1 (MQ=255)
            aCCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGa                                                                             >  2:1561069/1‑93 (MQ=255)
            aCCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGa                                                                             >  2:3163065/1‑93 (MQ=255)
             ccGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGaa                                                                            <  2:4770020/93‑1 (MQ=255)
              cGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAAc                                                                           <  1:5991851/93‑1 (MQ=255)
                cAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACaa                                                                         <  1:1900821/93‑1 (MQ=255)
                cAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACaa                                                                         <  2:769874/93‑1 (MQ=255)
                cAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACaa                                                                         <  1:4146973/93‑1 (MQ=255)
                 aaTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAg                                                                        <  2:6487717/93‑1 (MQ=255)
                 aaTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAg                                                                        >  2:6212954/1‑93 (MQ=255)
                 aaTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAg                                                                        >  2:4945976/1‑93 (MQ=255)
                  aTCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAgg                                                                       <  2:1667270/93‑1 (MQ=255)
                   tCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGt                                                                      >  2:403978/1‑93 (MQ=255)
                   tCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGt                                                                      >  1:3968296/1‑93 (MQ=255)
                   tCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGt                                                                      <  2:5620740/93‑1 (MQ=255)
                    cGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGtt                                                                     >  1:4679932/1‑93 (MQ=255)
                     gCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGttt                                                                    >  1:1195154/1‑93 (MQ=255)
                     gCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGttt                                                                    <  1:566480/93‑1 (MQ=255)
                      cTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGtttt                                                                   <  2:1129355/93‑1 (MQ=255)
                      cTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGtttt                                                                   <  2:3709188/93‑1 (MQ=255)
                       tttCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTc                                                                  >  2:6104662/1‑93 (MQ=255)
                          cAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTcccc                                                               >  2:516653/1‑93 (MQ=255)
                          cAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTcccc                                                               >  2:3358675/1‑93 (MQ=255)
                          cAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTcccc                                                               <  1:4969530/93‑1 (MQ=255)
                           aGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCa                                                              >  1:2472928/1‑93 (MQ=255)
                           aGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCa                                                              <  1:5022613/93‑1 (MQ=255)
                                tttCGAGCCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTg                                                         <  1:3742714/93‑1 (MQ=255)
                                 ttCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGa                                                        <  1:2916260/93‑1 (MQ=255)
                                  tCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGAc                                                       <  2:433219/93‑1 (MQ=255)
                                    gAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCa                                                     <  2:6578881/93‑1 (MQ=255)
                                     aaCCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGTTTTTCCCCAGCCTGACCat                                                    >  2:4432148/1‑92 (MQ=255)
                                      aCCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAt                                                   >  1:3081792/1‑93 (MQ=255)
                                      aCCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAt                                                   >  1:596315/1‑93 (MQ=255)
                                        ccATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAg                                                 >  1:1835235/1‑93 (MQ=255)
                                         cATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGGTTTCCCCAGCCTGACCAATAgc                                                >  1:2484014/1‑93 (MQ=255)
                                          attattGCGCCAGTTCCCGCACCGCCGCTGTTGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgcc                                               <  2:2144987/93‑1 (MQ=255)
                                          attattGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgcc                                               <  1:2712112/93‑1 (MQ=255)
                                          attattGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgcc                                               >  2:2460897/1‑93 (MQ=255)
                                             attGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgccgcc                                            <  1:1864759/93‑1 (MQ=255)
                                             attGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAgccgcc                                            <  2:2090316/93‑1 (MQ=255)
                                              ttGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCca                                           >  1:1441594/1‑93 (MQ=255)
                                                 cgcCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcacac                                        <  2:4886104/93‑1 (MQ=255)
                                                  gcCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCcacaca                                       >  2:461100/1‑93 (MQ=255)
                                                   ccAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAg                                      <  2:2051284/93‑1 (MQ=255)
                                                    cAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGATTTCCCCAGCCTGACCAATAGCCGCCACACAgg                                     >  1:315335/1‑93 (MQ=255)
                                                     aGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGt                                    >  1:2578781/1‑93 (MQ=255)
                                                        tCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTc                                 <  2:5952969/93‑1 (MQ=255)
                                                        tCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTc                                 <  1:194500/93‑1 (MQ=255)
                                                        tCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTc                                 <  1:3540146/93‑1 (MQ=255)
                                                         cccGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTcc                                <  1:2082084/93‑1 (MQ=255)
                                                         cccGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTcc                                <  2:2979507/93‑1 (MQ=255)
                                                         cccGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTcc                                >  2:2837886/1‑93 (MQ=255)
                                                          ccGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCg                               <  1:1241472/93‑1 (MQ=255)
                                                           cGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCgg                              <  1:958006/93‑1 (MQ=255)
                                                            gCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGa                             >  1:6079078/1‑93 (MQ=255)
                                                             cACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGAc                            <  2:2604242/93‑1 (MQ=255)
                                                             cACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGAc                            <  2:5865987/93‑1 (MQ=255)
                                                             cACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGAc                            <  1:4362231/93‑1 (MQ=255)
                                                                 gccgcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGt                        >  2:4092823/1‑93 (MQ=255)
                                                                  ccgcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTc                       <  1:2876578/93‑1 (MQ=255)
                                                                  ccgcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTc                       >  2:6069583/1‑93 (MQ=255)
                                                                  ccgcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTc                       >  1:4540759/1‑93 (MQ=255)
                                                                   cgcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGTCGACACACAGGTTTCCGGACTAGTCa                      >  1:6590589/1‑93 (MQ=255)
                                                                   cgcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCa                      >  2:4704304/1‑93 (MQ=255)
                                                                    gcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCaa                     <  1:4269076/93‑1 (MQ=255)
                                                                    gcTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCaa                     <  1:4812766/93‑1 (MQ=255)
                                                                    gcTGTGGATACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCaa                     >  1:6360717/1‑93 (MQ=255)
                                                                     cTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAAt                    <  1:6699375/93‑1 (MQ=255)
                                                                     cTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAAt                    <  2:83531/93‑1 (MQ=255)
                                                                      tgtgGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATc                   <  1:5292232/93‑1 (MQ=255)
                                                                      tgtgGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGGTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATc                   >  1:1659556/1‑93 (MQ=255)
                                                                        tgGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGATTCCGGACTAGTCAATCGa                 >  2:3212950/1‑93 (MQ=255)
                                                                         ggTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGAc                >  2:1628638/1‑93 (MQ=255)
                                                                          gTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACa               <  2:5220265/93‑1 (MQ=255)
                                                                                gCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATttc         <  2:5825569/93‑1 (MQ=255)
                                                                                 cTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATttct        <  1:1576097/93‑1 (MQ=255)
                                                                                  tATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATttctt       >  1:5348616/1‑93 (MQ=255)
                                                                                  tATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATttctt       >  1:1393329/1‑93 (MQ=255)
                                                                                   aTTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATttcttc      <  1:6230711/93‑1 (MQ=255)
                                                                                   aTTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATttcttc      <  1:1782102/93‑1 (MQ=255)
                                                                                    ttCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTcc     >  1:573852/1‑93 (MQ=255)
                                                                                    ttCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTcc     <  2:6257473/93‑1 (MQ=255)
                                                                                    ttCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTcc     <  2:2371359/93‑1 (MQ=255)
                                                                                     tCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCcg    >  1:2528215/1‑93 (MQ=255)
                                                                                     tCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCcg    >  2:1888432/1‑93 (MQ=255)
                                                                                      cAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCcgt   <  2:3013120/93‑1 (MQ=255)
                                                                                       aaCGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCcgtc  <  2:3651458/93‑1 (MQ=255)
                                                                                          |                                                                                         
TTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTC  >  NC_000913/1751238‑1751417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTTG  >  NC_000913/1751235‑1751421
                                                                                             |                                                                                             
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACG                                                                                               >  SRR4302536.3774677/1‑94 (MQ=60)
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACG                                                                                               <  SRR4302536.4291225/94‑1 (MQ=60)
  TTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTG                                                                                             <  SRR4302536.4041871/94‑1 (MQ=60)
     CGTCCCTTCAACCGCAATCTCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCA                                                                                          <  SRR4302536.4579213/94‑1 (MQ=60)
     CGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCA                                                                                          >  SRR4302536.1971260/1‑94 (MQ=60)
      GTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAG                                                                                         >  SRR4302536.5899722/1‑94 (MQ=60)
        CCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAG                                                                                       <  SRR4302536.354800/94‑1 (MQ=60)
         CCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGA                                                                                      <  SRR4302536.6047684/94‑1 (MQ=60)
            TCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAG                                                                                   <  SRR4302536.6933746/94‑1 (MQ=60)
            TCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAG                                                                                   <  SRR4302536.6841364/94‑1 (MQ=60)
            TCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAG                                                                                   >  SRR4302536.2631510/1‑94 (MQ=60)
             CAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGG                                                                                  >  SRR4302536.2069600/1‑94 (MQ=60)
             CAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGG                                                                                  <  SRR4302536.807124/94‑1 (MQ=60)
              AACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGA                                                                                 >  SRR4302536.6151017/1‑94 (MQ=60)
              AACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGA                                                                                 <  SRR4302536.4253842/94‑1 (MQ=60)
              AACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGA                                                                                 <  SRR4302536.636984/94‑1 (MQ=60)
              AACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGA                                                                                 >  SRR4302536.1746732/1‑94 (MQ=60)
               ACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAA                                                                                >  SRR4302536.4717425/1‑94 (MQ=60)
                 CGCAATCGCTTTCAGGTTTTTCGGACCCATTATTTCGCCAGTTCTCGCACCGCCGCTGTGGTTACGGCTATTTCACGTTGCAGAGAGAGGAACA                                                                              >  SRR4302536.6570780/1‑94 (MQ=60)
                 CGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACA                                                                              >  SRR4302536.1993935/1‑94 (MQ=60)
                 CGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACA                                                                              <  SRR4302536.6170475/94‑1 (MQ=60)
                   CAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAG                                                                            <  SRR4302536.4270017/94‑1 (MQ=60)
                   CAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAG                                                                            <  SRR4302536.1958058/94‑1 (MQ=60)
                   CAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAG                                                                            <  SRR4302536.4649979/94‑1 (MQ=60)
                    AATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGG                                                                           <  SRR4302536.3663335/94‑1 (MQ=60)
                     ATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGT                                                                          >  SRR4302536.4086108/1‑94 (MQ=60)
                      TCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTT                                                                         >  SRR4302536.4820671/1‑94 (MQ=60)
                       CGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTT                                                                        <  SRR4302536.3247538/94‑1 (MQ=60)
                       CGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTT                                                                        >  SRR4302536.5896663/1‑94 (MQ=60)
                       CGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTT                                                                        >  SRR4302536.1231087/1‑94 (MQ=60)
                        GCTTTCATGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTT                                                                       <  SRR4302536.4237023/94‑1 (MQ=60)
                        GCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTT                                                                       >  SRR4302536.2581808/1‑94 (MQ=60)
                        GCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTT                                                                       >  SRR4302536.2558191/1‑94 (MQ=60)
                        GCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTT                                                                       <  SRR4302536.580903/94‑1 (MQ=60)
                         CTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTC                                                                      >  SRR4302536.2578893/1‑94 (MQ=60)
                          TTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCC                                                                     >  SRR4302536.286209/1‑94 (MQ=60)
                             CAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCA                                                                  <  SRR4302536.5118811/94‑1 (MQ=60)
                             CAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCA                                                                  >  SRR4302536.2547584/1‑94 (MQ=60)
                              AGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAG                                                                 <  SRR4302536.5173159/94‑1 (MQ=60)
                                GTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCC                                                               >  SRR4302536.5925545/1‑94 (MQ=60)
                                 TTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCT                                                              <  SRR4302536.6652318/94‑1 (MQ=60)
                                 TTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCT                                                              <  SRR4302536.3726295/94‑1 (MQ=60)
                                 TTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCT                                                              >  SRR4302536.35931/1‑94 (MQ=60)
                                   TTTCGAGCCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGA                                                            <  SRR4302536.3854604/94‑1 (MQ=60)
                                    TTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGAC                                                           <  SRR4302536.3002336/94‑1 (MQ=60)
                                      CGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCA                                                         >  SRR4302536.5404560/1‑94 (MQ=60)
                                        AGCCCATGATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCACCGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAT                                                       <  SRR4302536.4266723/94‑1 (MQ=60)
                                        AACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAT                                                       >  SRR4302536.612916/1‑94 (MQ=60)
                                        AACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAT                                                       >  SRR4302536.4488510/1‑94 (MQ=60)
                                        AACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAT                                                       >  SRR4302536.3171967/1‑94 (MQ=60)
                                        AACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAT                                                       >  SRR4302536.5131111/1‑94 (MQ=60)
                                        AACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAAT                                                       <  SRR4302536.6076492/94‑1 (MQ=60)
                                         ACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATA                                                      >  SRR4302536.5704008/1‑94 (MQ=60)
                                         ACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATA                                                      <  SRR4302536.4301334/94‑1 (MQ=60)
                                          CCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAG                                                     >  SRR4302536.1890562/1‑94 (MQ=60)
                                           CCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGGTTTCCCCAGCCTGACCAATAGC                                                    >  SRR4302536.2558962/1‑94 (MQ=60)
                                            CATTATTGCGCCGGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCC                                                   <  SRR4302536.191269/94‑1 (MQ=60)
                                             ATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCG                                                  <  SRR4302536.2793013/94‑1 (MQ=60)
                                              TTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGC                                                 >  SRR4302536.3223123/1‑94 (MQ=60)
                                                ATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCA                                               >  SRR4302536.1484340/1‑94 (MQ=60)
                                                ATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCA                                               <  SRR4302536.1920909/94‑1 (MQ=60)
                                                  TGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTGTTCCCCAGCCTTATCAATAGCCGCCACA                                             >  SRR4302536.6363582/1‑94 (MQ=60)
                                                      CCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGG                                         >  SRR4302536.129593/1‑94 (MQ=60)
                                                      CCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGATTTCCCCAGCCTGACCAATAGCCGCCACACAGG                                         >  SRR4302536.323694/1‑94 (MQ=60)
                                                       CAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGT                                        >  SRR4302536.2656305/1‑94 (MQ=60)
                                                        AGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTT                                       <  SRR4302536.1940347/94‑1 (MQ=60)
                                                         GTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTT                                      <  SRR4302536.3053233/94‑1 (MQ=60)
                                                          TTCCCGCTCCGCGGCTGTGGTTACGCCTATTCAACGTGCCAGAGAGAGGACCAAGGTTTTGCCCAGCCTGACCAATAGCCGCCACACAGGTTTC                                     <  SRR4302536.2302735/94‑1 (MQ=60)
                                                           TCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCC                                    <  SRR4302536.4459018/94‑1 (MQ=60)
                                                           TCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCC                                    <  SRR4302536.199618/94‑1 (MQ=60)
                                                           TCCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCC                                    <  SRR4302536.3645997/94‑1 (MQ=60)
                                                            CCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGGACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCG                                   >  SRR4302536.3933018/1‑94 (MQ=60)
                                                            CCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCG                                   <  SRR4302536.6484905/94‑1 (MQ=60)
                                                            CCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCG                                   <  SRR4302536.2144760/94‑1 (MQ=60)
                                                            CCCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCG                                   <  SRR4302536.6111213/94‑1 (MQ=60)
                                                             CCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGG                                  >  SRR4302536.1442104/1‑94 (MQ=60)
                                                             CCGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGG                                  <  SRR4302536.1278746/94‑1 (MQ=60)
                                                              CGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGA                                 >  SRR4302536.6260415/1‑94 (MQ=60)
                                                              CGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGA                                 <  SRR4302536.986321/94‑1 (MQ=60)
                                                              CGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGA                                 >  SRR4302536.3031349/1‑94 (MQ=60)
                                                              CGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGGTTCCGGA                                 >  SRR4302536.847314/1‑94 (MQ=60)
                                                              CGCACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGCTTCCGGA                                 >  SRR4302536.6655906/1‑94 (MQ=60)
                                                                CACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACT                               <  SRR4302536.4492616/94‑1 (MQ=60)
                                                                 ACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCACTAGCCGCCACACAGGATTCCGGACTA                              >  SRR4302536.1569279/1‑94 (MQ=60)
                                                                 ACCGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTA                              >  SRR4302536.4843649/1‑94 (MQ=60)
                                                                   CGCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGT                            >  SRR4302536.163028/1‑94 (MQ=60)
                                                                    GCCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTC                           >  SRR4302536.4676910/1‑94 (MQ=60)
                                                                     CCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGTCGACACACAGGTTTCCGGACTAGTCA                          >  SRR4302536.6786647/1‑94 (MQ=60)
                                                                     CCGCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCA                          <  SRR4302536.2961497/94‑1 (MQ=60)
                                                                      CGCTGTGGATACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAA                         >  SRR4302536.6550224/1‑94 (MQ=60)
                                                                       GCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAAT                        <  SRR4302536.4957579/94‑1 (MQ=60)
                                                                       GCTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAAT                        <  SRR4302536.4396316/94‑1 (MQ=60)
                                                                        CTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATC                       >  SRR4302536.1255641/1‑94 (MQ=60)
                                                                        CTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATC                       <  SRR4302536.6898358/94‑1 (MQ=60)
                                                                        CTGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGGTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATC                       >  SRR4302536.1707736/1‑94 (MQ=60)
                                                                         TGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCG                      <  SRR4302536.5753673/94‑1 (MQ=60)
                                                                         TGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCG                      <  SRR4302536.2998778/94‑1 (MQ=60)
                                                                         TGTGGTTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCG                      <  SRR4302536.5450043/94‑1 (MQ=60)
                                                                             GTTACGGCTATTCAACGTCCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAA                  <  SRR4302536.5466963/94‑1 (MQ=60)
                                                                              TTACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAA                 >  SRR4302536.1646956/1‑94 (MQ=60)
                                                                                ACGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATT               >  SRR4302536.6208361/1‑94 (MQ=60)
                                                                                 CGGCTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTT              <  SRR4302536.2273791/94‑1 (MQ=60)
                                                                                    CTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTT           >  SRR4302536.5508312/1‑94 (MQ=60)
                                                                                    CTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTT           >  SRR4302536.185506/1‑94 (MQ=60)
                                                                                    CTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTT           <  SRR4302536.1622291/94‑1 (MQ=60)
                                                                                    CTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTT           >  SRR4302536.1434824/1‑94 (MQ=60)
                                                                                    CTATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTT           <  SRR4302536.5901142/94‑1 (MQ=60)
                                                                                     TATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTC          <  SRR4302536.2665437/94‑1 (MQ=60)
                                                                                      ATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCC         <  SRR4302536.48155/94‑1 (MQ=60)
                                                                                      ATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCC         <  SRR4302536.1835963/94‑1 (MQ=60)
                                                                                      ATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCC         <  SRR4302536.6416354/94‑1 (MQ=60)
                                                                                      ATTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCC         >  SRR4302536.588430/1‑94 (MQ=60)
                                                                                       TTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCCG        <  SRR4302536.4525394/94‑1 (MQ=60)
                                                                                       TTCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCCG        >  SRR4302536.2604424/1‑94 (MQ=60)
                                                                                        TCAACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCCGT       <  SRR4302536.5059883/94‑1 (MQ=60)
                                                                                          AACGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCCGTCG     >  SRR4302536.4860217/1‑94 (MQ=60)
                                                                                            CGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCCGTCGTT   <  SRR4302536.2440602/94‑1 (MQ=60)
                                                                                            CGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCCGTCGTT   <  SRR4302536.558903/94‑1 (MQ=60)
                                                                                            CGTGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTAGTCAATCGACAAATTTCTTCCGTCGTT   >  SRR4302536.6029545/1‑94 (MQ=60)
                                                                                             GTGCCAGAGAGAGGAACAAGGATTTCCCCAGCCTGACAAATAGCCGCCACACAGGGTTCCGGACTAGTCAATCGACAAATTTCTTCCGTCGTTG  >  SRR4302536.4799717/1‑94 (MQ=60)
                                                                                             |                                                                                             
CCTTTCGTCCCTTCAACCGCAATCGCTTTCAGGTTTTTCGAACCCATTATTGCGCCAGTTCCCGCACCGCCGCTGTGGTTACGGCTATTCAACATGCCAGAGAGAGGAACAAGGTTTTCCCCAGCCTGACCAATAGCCGCCACACAGGTTTCCGGACTGGTCAATCGACAAATTTCTTCCGTCGTTG  >  NC_000913/1751235‑1751421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑