Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,756,526 |
A→G |
V75A (GTG→GCG) |
ynhG ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,756,526 | 0 | A | G | 100.0%
| 462.9
/ NA
| 143 | V75A (GTG→GCG) | ynhG | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (73/70); total (73/70) |
Only 100 of 150 total aligned reads displayed.
AGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCT > NC_000913/1756436‑1756615
|
aGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGcc > 2:2993156/1‑93 (MQ=255)
gCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCg > 2:651141/1‑93 (MQ=255)
gCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCg < 2:3279589/93‑1 (MQ=255)
gCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCg > 1:3581892/1‑93 (MQ=255)
ctctGCAAGGTTAACGATAATCCCCTGACGCGGCGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCgg < 2:85949/93‑1 (MQ=255)
tctGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCggg > 1:1116042/1‑93 (MQ=255)
tctGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCggg < 2:838061/93‑1 (MQ=255)
ctGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCgggg > 2:1332644/1‑93 (MQ=255)
ctGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCgggg < 2:3774357/93‑1 (MQ=255)
tGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGc < 1:2057311/93‑1 (MQ=255)
gCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCg > 1:2259831/1‑93 (MQ=255)
aaGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGAt > 2:601228/1‑93 (MQ=255)
aaGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGAt > 2:1861019/1‑93 (MQ=255)
aGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATa > 1:3633052/1‑93 (MQ=255)
aGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATa > 1:3408532/1‑93 (MQ=255)
ggTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAg < 2:3805599/93‑1 (MQ=255)
gTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAgt > 2:4043309/1‑93 (MQ=255)
tAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAgtgt > 2:3037997/1‑93 (MQ=255)
aCGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTa < 2:1314317/93‑1 (MQ=255)
cGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGCTAGTGTTAt > 1:506079/1‑93 (MQ=255)
cGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTAt < 2:3229736/93‑1 (MQ=255)
gATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGAGCCGGGGCGATAGTGTTAtt > 2:1193048/1‑93 (MQ=255)
tAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGTGCCGGGGCGATAGTGTTATTgg < 1:1492452/93‑1 (MQ=255)
tAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTgg < 2:2218627/93‑1 (MQ=255)
tAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTgg < 2:3470923/93‑1 (MQ=255)
aaTCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGTGCCGGGGCGATAGTGTTATTGGc > 2:2593060/1‑93 (MQ=255)
aaTCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGc > 2:463962/1‑93 (MQ=255)
aaTCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGc < 1:3285269/93‑1 (MQ=255)
tCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCtt > 1:2164524/1‑93 (MQ=255)
tCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCtt > 1:369679/1‑93 (MQ=255)
tCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCtt > 1:2813889/1‑93 (MQ=255)
cccTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCa > 1:3371695/1‑93 (MQ=255)
ccTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCaa > 2:427809/1‑93 (MQ=255)
cTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAg > 2:455200/1‑93 (MQ=255)
gACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGa < 2:4442322/93‑1 (MQ=255)
aCGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGAt < 1:3013770/93‑1 (MQ=255)
gcgGGGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTTAAAGATCa > 2:2473159/1‑93 (MQ=255)
cgGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCaa > 1:4439573/1‑93 (MQ=255)
cgGTGCATCAGGTAATAACAGTGGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCaa < 1:815019/93‑1 (MQ=255)
gCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTTGCTTCAAGGATCAACAtt > 1:1082941/1‑93 (MQ=255)
aTCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGc < 1:1290124/93‑1 (MQ=255)
tCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGcc < 2:357528/93‑1 (MQ=255)
tCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGcc < 1:665510/93‑1 (MQ=255)
tCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGcc < 2:2958714/93‑1 (MQ=255)
ggTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCa < 2:239806/93‑1 (MQ=255)
taataaCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGt < 1:543226/93‑1 (MQ=255)
taataaCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGt > 2:2051768/1‑93 (MQ=255)
taataaCAGTGGTGAAGGAATAGTTATCCTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGt < 1:4432861/93‑1 (MQ=255)
aataaCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTa > 2:2513987/1‑93 (MQ=255)
ataaCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTAt > 1:3854680/1‑93 (MQ=255)
taaCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATc > 2:2359918/1‑93 (MQ=255)
taaCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATc > 1:4544777/1‑93 (MQ=255)
taaCAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATc > 2:2152169/1‑93 (MQ=255)
aGTTGTGAAGGAATAGTTATCGTCGTACCAGGATTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCaaaa > 1:1478026/1‑93 (MQ=255)
gTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAAc < 1:940938/93‑1 (MQ=255)
tgAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCg < 1:3166225/93‑1 (MQ=255)
tgAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCg < 1:2109431/93‑1 (MQ=255)
aaGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCggg < 2:2878687/93‑1 (MQ=255)
aaGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCggg < 2:4455568/93‑1 (MQ=255)
ggAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCa < 1:3412199/93‑1 (MQ=255)
aaTAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAAt < 2:1956600/93‑1 (MQ=255)
aaTAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAAt < 2:1525269/93‑1 (MQ=255)
aaTAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAAt < 1:4187510/93‑1 (MQ=255)
aTAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATa > 2:3677732/1‑93 (MQ=255)
aTAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATa > 2:4240663/1‑93 (MQ=255)
tAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAg < 1:270647/93‑1 (MQ=255)
gTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGcc < 2:4529566/93‑1 (MQ=255)
ttATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTAATGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCt < 1:4596613/93‑1 (MQ=255)
aTCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGa < 2:2608131/93‑1 (MQ=255)
aTCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGa > 1:4692615/1‑93 (MQ=255)
tcgtcgTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGaa < 1:4420912/93‑1 (MQ=255)
tcgtcgTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGaa > 1:4058442/1‑93 (MQ=255)
tcgtcgTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGaa > 1:3446589/1‑93 (MQ=255)
cgtcgtACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAg < 2:3537981/93‑1 (MQ=255)
gtcgtACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAgg > 2:1712987/1‑93 (MQ=255)
cgtACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGtt < 2:2852343/93‑1 (MQ=255)
gtACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGttt > 1:1754314/1‑93 (MQ=255)
gtACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGgtt > 1:1754315/1‑93 (MQ=255)
tACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGtttt > 1:1423817/1‑93 (MQ=255)
tACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGtttt > 1:1545243/1‑93 (MQ=255)
tACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGtttt > 1:4619870/1‑93 (MQ=255)
tACCAGGGTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGtttt < 1:3192536/93‑1 (MQ=255)
tACCAGATTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGtttt > 2:4668642/1‑93 (MQ=255)
aCCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGttttt > 2:3790749/1‑93 (MQ=255)
ccAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTa > 2:4711834/1‑93 (MQ=255)
ccAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTa < 2:4504714/93‑1 (MQ=255)
ccAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTa > 1:3814518/1‑93 (MQ=255)
cAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTAt > 2:175142/1‑93 (MQ=255)
cAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTAt > 2:1198915/1‑93 (MQ=255)
cAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTAt < 2:1637188/93‑1 (MQ=255)
cAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTAt > 2:3265160/1‑93 (MQ=255)
aGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATc > 2:3911183/1‑93 (MQ=255)
aGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATc > 2:1641667/1‑93 (MQ=255)
ggTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATcc > 1:1561127/1‑93 (MQ=255)
ttttGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATcccc < 1:3744558/93‑1 (MQ=255)
ttttGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATcccc > 1:973744/1‑93 (MQ=255)
ttttGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATcccc < 1:3457184/93‑1 (MQ=255)
ttGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCTAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCctt < 1:3001188/93‑1 (MQ=255)
ttGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCctt < 2:4152215/93‑1 (MQ=255)
ggCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCcttct < 1:466987/93‑1 (MQ=255)
|
AGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCT > NC_000913/1756436‑1756615
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTGCA > NC_000913/1756433‑1756619
|
CGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCG > SRR4302544.3012225/1‑94 (MQ=60)
AGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCG > SRR4302544.3616255/1‑94 (MQ=60)
CTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGG > SRR4302544.1127184/1‑94 (MQ=60)
CTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGG < SRR4302544.1289961/94‑1 (MQ=60)
CTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGG > SRR4302544.4135805/1‑94 (MQ=60)
TGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCG > SRR4302544.2281088/1‑94 (MQ=60)
TGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCG < SRR4302544.2077104/94‑1 (MQ=60)
AAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATA > SRR4302544.3441124/1‑94 (MQ=60)
AAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATA > SRR4302544.3669276/1‑94 (MQ=60)
AACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTA > SRR4302544.1889305/1‑94 (MQ=60)
ACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGCTAGTGTTAT > SRR4302544.511052/1‑94 (MQ=60)
CGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATT < SRR4302544.2935071/94‑1 (MQ=60)
ATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGG < SRR4302544.1510390/94‑1 (MQ=60)
TAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGTGCCGGGGCGATAGTGTTATTGGC < SRR4302544.1507212/94‑1 (MQ=60)
AATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCT < SRR4302544.3316577/94‑1 (MQ=60)
ATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTT > SRR4302544.373451/1‑94 (MQ=60)
ATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTT > SRR4302544.2185071/1‑94 (MQ=60)
ATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTT > SRR4302544.2841047/1‑94 (MQ=60)
ATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGGGAAGGAATACTTATCGTCGTAGCAGGTGTTGGAGCCGTGGCGGTAGTGTTATTGGCTA > SRR4302544.2185070/1‑94 (MQ=60)
CCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCA > SRR4302544.3403885/1‑94 (MQ=60)
CCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCA > SRR4302544.3834291/1‑94 (MQ=60)
CCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAG < SRR4302544.145869/94‑1 (MQ=60)
tgcgccggggaataaggtataAACAGTTGTG‑AGGAATAGGTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGAT < SRR4302544.3325664/73‑1 (MQ=60)
ACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATC < SRR4302544.3446892/94‑1 (MQ=60)
ACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATC < SRR4302544.3042660/94‑1 (MQ=60)
GCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAA > SRR4302544.4003773/1‑94 (MQ=60)
GCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAA > SRR4302544.4484336/1‑94 (MQ=60)
CGGTGCATCAGGTAATAACAGTGGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAAC < SRR4302544.822979/94‑1 (MQ=60)
TGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTTGCTTCAAGGATCAACATT > SRR4302544.1093714/1‑94 (MQ=60)
ATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCC < SRR4302544.1302827/94‑1 (MQ=60)
TCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCG < SRR4302544.672083/94‑1 (MQ=60)
GGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAG > SRR4302544.3068458/1‑94 (MQ=60)
GGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAG > SRR4302544.1716549/1‑94 (MQ=60)
TAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTA < SRR4302544.548569/94‑1 (MQ=60)
TAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTA < SRR4302544.4477581/94‑1 (MQ=60)
TAATAACAGTGGTGAAGGAATAGTTATCCTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTA < SRR4302544.4477580/94‑1 (MQ=60)
AATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTAT > SRR4302544.3892945/1‑94 (MQ=60)
ATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATC > SRR4302544.4590179/1‑94 (MQ=60)
TAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCA > SRR4302544.3697816/1‑94 (MQ=60)
CAGTTGTGAAGGAATAGTTATCGTCGTACCAGGATTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAA > SRR4302544.1492638/1‑94 (MQ=60)
GTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACG < SRR4302544.950205/94‑1 (MQ=60)
GTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACG < SRR4302544.887627/94‑1 (MQ=60)
TGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGG < SRR4302544.2129720/94‑1 (MQ=60)
TGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGG < SRR4302544.3196356/94‑1 (MQ=60)
AGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCA > SRR4302544.55787/1‑94 (MQ=60)
AGGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCA > SRR4302544.3598697/1‑94 (MQ=60)
GGAATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAA < SRR4302544.3444811/94‑1 (MQ=60)
AATAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATA < SRR4302544.4228984/94‑1 (MQ=60)
TAGTTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGC < SRR4302544.273502/94‑1 (MQ=60)
TTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTG < SRR4302544.4366397/94‑1 (MQ=60)
TTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTG < SRR4302544.4691217/94‑1 (MQ=60)
TTATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTAATGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTG < SRR4302544.4642326/94‑1 (MQ=60)
TATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGA > SRR4302544.4738962/1‑94 (MQ=60)
ATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAA > SRR4302544.3479514/1‑94 (MQ=60)
ATCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAA > SRR4302544.4098862/1‑94 (MQ=60)
TCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAG < SRR4302544.4465521/94‑1 (MQ=60)
TCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAG < SRR4302544.3298548/94‑1 (MQ=60)
TCGTCGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAG < SRR4302544.2351132/94‑1 (MQ=60)
CGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTT > SRR4302544.1771486/1‑94 (MQ=60)
CGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTT < SRR4302544.3413420/94‑1 (MQ=60)
CGTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGGTT > SRR4302544.1771487/1‑94 (MQ=60)
GTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTT > SRR4302544.1560633/1‑94 (MQ=60)
GTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTT > SRR4302544.1437987/1‑94 (MQ=60)
GTACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTT > SRR4302544.4665710/1‑94 (MQ=60)
TACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTT < SRR4302544.4744336/94‑1 (MQ=60)
TACCAGGGTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTT < SRR4302544.3222959/94‑1 (MQ=60)
ACCAGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTA > SRR4302544.3852323/1‑94 (MQ=60)
AGGTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCC > SRR4302544.1576631/1‑94 (MQ=60)
GTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCC > SRR4302544.983291/1‑94 (MQ=60)
GTTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCC > SRR4302544.4611197/1‑94 (MQ=60)
TTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCT < SRR4302544.3781760/94‑1 (MQ=60)
TTTTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCT < SRR4302544.3490179/94‑1 (MQ=60)
TTGGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCTAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTC < SRR4302544.3029960/94‑1 (MQ=60)
GGCGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTT < SRR4302544.471562/94‑1 (MQ=60)
CGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTGC < SRR4302544.3739523/94‑1 (MQ=60)
CGCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTGC > SRR4302544.1921050/1‑94 (MQ=60)
GCCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTGCA < SRR4302544.3781017/94‑1 (MQ=60)
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CGCAGCTCTGCAAGGTTAACGATAATCCCCTGACGCGGTGCATCAGGTAATAACAGTTGTGAAGGAATAGTTATCGTCGTACCAGGTTTTGGCACCGGGGCGATAGTGTTATTGGCTTCAAGGATCAACATTGCCGCAGTATCAAAACGTCGGGCAATAGCCTGAAGGTTTTTATCCCCTTCTTGCA > NC_000913/1756433‑1756619
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
