Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,757,874 |
T→C |
H225R (CAT→CGT) |
b1680 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,757,874 | 0 | T | C | 100.0%
| 382.5
/ NA
| 116 | H225R (CAT→CGT) | b1680 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (80/36); total (80/36) |
Only 100 of 119 total aligned reads displayed.
AGAACCGCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTATGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACTTTT > NC_000913/1757786‑1757963
|
aGAACCGCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGccc > 1:1256912/1‑93 (MQ=255)
gAACCGCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCg < 1:3941587/93‑1 (MQ=255)
aaCCGCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCgg > 1:612436/1‑93 (MQ=255)
aCCGCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGga < 2:3289544/93‑1 (MQ=255)
ccGCCCCCTTCACACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGgag > 2:2649868/1‑93 (MQ=255)
gCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGaa > 1:168240/1‑93 (MQ=255)
gCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGaa < 1:2170519/93‑1 (MQ=255)
gccccTTCCCACGGCGGCATCTCCTGCAACATGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAac < 1:2915243/92‑1 (MQ=255)
cccccTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAac > 1:3747752/1‑93 (MQ=255)
ccccTTCCCACGGCGGCATCTCCTGCATCAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAaca < 1:4438253/93‑1 (MQ=255)
cccTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAacac > 2:1897619/1‑93 (MQ=255)
cTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGt > 2:2416778/1‑93 (MQ=255)
cTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGt < 2:3191803/93‑1 (MQ=255)
ttCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTa > 1:3704631/1‑93 (MQ=255)
ttCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTa > 1:1227485/1‑93 (MQ=255)
ccACGGCGGCATCTCCTGCAACATGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTaaaa < 2:2591866/93‑1 (MQ=255)
ccACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTaaaa > 2:4587399/1‑93 (MQ=255)
cACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAg < 2:1244216/93‑1 (MQ=255)
cACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAg < 1:3119025/93‑1 (MQ=255)
aCGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGACTGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGt > 1:58419/1‑93 (MQ=255)
ggcggcATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCg > 2:2067136/1‑93 (MQ=255)
gcggcATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGc > 1:3734788/1‑93 (MQ=255)
gcggcATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGc > 1:127261/1‑93 (MQ=255)
gcggcATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGc > 1:899678/1‑93 (MQ=255)
cggcATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACTCCCGGAGAACACGTAAAAGTCGCa > 2:2749852/1‑93 (MQ=255)
ggcATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCaa > 2:766635/1‑93 (MQ=255)
gcATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAAt < 1:4203378/93‑1 (MQ=255)
gcATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAAt < 2:3344205/93‑1 (MQ=255)
gcATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAAt > 2:897072/1‑93 (MQ=255)
gcATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAAt > 1:202933/1‑93 (MQ=255)
cATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATc > 2:1250650/1‑93 (MQ=255)
aTCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATcc > 1:1761916/1‑93 (MQ=255)
tctcCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCa > 1:4227134/1‑93 (MQ=255)
ctcCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAg < 2:3475558/93‑1 (MQ=255)
tcCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGCCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAgc < 2:1987134/93‑1 (MQ=255)
cTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAgcgc > 1:407907/1‑93 (MQ=255)
cTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAgcgc > 2:4108919/1‑93 (MQ=255)
cTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAgcgc > 2:2659238/1‑93 (MQ=255)
tGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGcc > 1:3838619/1‑93 (MQ=255)
tGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGcc < 2:2855958/93‑1 (MQ=255)
tGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGcc < 2:3736801/93‑1 (MQ=255)
caacaaGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTg > 1:1995773/1‑93 (MQ=255)
aacaaGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGa > 2:648959/1‑93 (MQ=255)
caaGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAAc > 1:1968053/1‑93 (MQ=255)
aaGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACa > 2:1401766/1‑93 (MQ=255)
aGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACAt < 1:3354240/93‑1 (MQ=255)
aGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACAt > 1:4232316/1‑93 (MQ=255)
ggCTTCTTTCACGTAAAGAATGCCACTTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTCACAGTCGCAATCCAGCGCCTGAAAATc > 1:1760820/1‑93 (MQ=255)
ggCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATc > 2:3172534/1‑93 (MQ=255)
ggCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATc > 1:3676335/1‑93 (MQ=255)
ggCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATc > 1:2669153/1‑93 (MQ=255)
cttcttTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCa < 2:149122/93‑1 (MQ=255)
cttcttTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCa > 2:3923723/1‑93 (MQ=255)
tcttTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCAcc > 2:2944416/1‑93 (MQ=255)
cttTCACATAAAGAATGCCAATTCCGCTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCAcag > 2:1368265/1‑91 (MQ=255)
tttCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCgg > 2:3579059/1‑93 (MQ=255)
tttCACATAAAGAATGCCAATTCCGGAGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCga > 2:1267206/1‑92 (MQ=255)
cacaTAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGgatg > 2:1897662/1‑93 (MQ=255)
tAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGc > 2:666998/1‑93 (MQ=255)
aaaGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCa > 2:2232258/1‑93 (MQ=255)
aaGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCAt > 2:499408/1‑93 (MQ=255)
aaGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCAt > 2:499407/1‑93 (MQ=255)
aGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCACTCCAGCGCCTGAACATCCACCGGATGATGCATc > 1:4575640/1‑93 (MQ=255)
aGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATc < 2:1442322/93‑1 (MQ=255)
gAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCa > 2:47378/1‑93 (MQ=255)
aaTGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCAc < 1:2570035/93‑1 (MQ=255)
aTGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCAcc > 1:736217/1‑93 (MQ=255)
ccAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGcc < 1:4092553/93‑1 (MQ=255)
cAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCt > 1:4703830/1‑93 (MQ=255)
aaTTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTg < 2:730525/93‑1 (MQ=255)
cttCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGa < 1:33678/92‑1 (MQ=255)
aTTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGa > 1:1898717/1‑93 (MQ=255)
aTTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGa > 1:4423752/1‑93 (MQ=255)
aTTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGa > 2:2151470/1‑93 (MQ=255)
ttCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAg > 1:3591656/1‑93 (MQ=255)
ttCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAg < 1:316426/93‑1 (MQ=255)
ccGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAgcg < 2:1454517/93‑1 (MQ=255)
ccGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAgcg > 2:2133317/1‑93 (MQ=255)
ggTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGcc < 2:3696419/93‑1 (MQ=255)
ggTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGcc > 2:1369349/1‑93 (MQ=255)
gTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGGGCCa > 1:2957024/1‑93 (MQ=255)
ggggCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATc > 2:2992588/1‑93 (MQ=255)
gggCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATcc > 2:3184242/1‑93 (MQ=255)
gggCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATcc > 2:3184241/1‑93 (MQ=255)
cATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATccacca < 1:1895772/93‑1 (MQ=255)
cATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATccacca > 2:1829145/1‑93 (MQ=255)
cATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATccacca < 2:4557441/93‑1 (MQ=255)
cATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATccacca > 1:2505126/1‑93 (MQ=255)
cATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATccacca > 1:2100478/1‑93 (MQ=255)
aTACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAg > 2:3162356/1‑93 (MQ=255)
aTACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAg > 2:2210636/1‑93 (MQ=255)
tACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGc > 1:2816096/1‑93 (MQ=255)
tACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGc > 2:4345194/1‑93 (MQ=255)
cAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCAc < 2:1776724/93‑1 (MQ=255)
gTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACtt > 1:1766750/1‑93 (MQ=255)
gTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACtt < 1:3640851/93‑1 (MQ=255)
tttACGCCCGGAGAACACGTAGAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACttt < 2:470680/93‑1 (MQ=255)
tttACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACttt < 2:2869389/93‑1 (MQ=255)
ttACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACtttt < 2:2949336/93‑1 (MQ=255)
ttACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACtttt < 2:3910781/93‑1 (MQ=255)
|
AGAACCGCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTATGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACTTTT > NC_000913/1757786‑1757963
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCATAGAACCGCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTATGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACTTTTGCG > NC_000913/1757781‑1757966
|
ATCATAGAACCGCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTAC > SRR4302544.594253/1‑94 (MQ=60)
TCATAGAACCGCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACG < SRR4302544.423957/94‑1 (MQ=60)
TAGAACCGCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCC > SRR4302544.1269282/1‑94 (MQ=60)
GAACCGCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGG > SRR4302544.618446/1‑94 (MQ=60)
GAACCGCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGG < SRR4302544.3980747/94‑1 (MQ=60)
CGCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAA > SRR4302544.169900/1‑94 (MQ=60)
GCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAAC > SRR4302544.3784982/1‑94 (MQ=60)
GCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAAC < SRR4302544.2191102/94‑1 (MQ=60)
GCCCCTTCCCACGGCGGCATCTCCTGCAACATGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACA < SRR4302544.2943275/94‑1 (MQ=60)
CCCCTTCCCACGGCGGCATCTCCTGCATCAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACAC < SRR4302544.4483004/94‑1 (MQ=60)
CTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTA > SRR4302544.1239633/1‑94 (MQ=60)
CTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTA > SRR4302544.3741497/1‑94 (MQ=60)
TTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAA < SRR4302544.3336298/94‑1 (MQ=60)
CACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGACTGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGT > SRR4302544.59012/1‑94 (MQ=60)
CACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGT < SRR4302544.3148687/94‑1 (MQ=60)
GGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGC > SRR4302544.908581/1‑94 (MQ=60)
GGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGC > SRR4302544.3771916/1‑94 (MQ=60)
GGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGC > SRR4302544.128435/1‑94 (MQ=60)
GGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAAT > SRR4302544.204997/1‑94 (MQ=60)
GGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGACCATACAGTTTACGCCCGGAGACCACGTAAAAGTCGCAAT > SRR4302544.204996/1‑94 (MQ=60)
GCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATC < SRR4302544.4245456/94‑1 (MQ=60)
CATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCC > SRR4302544.1779152/1‑94 (MQ=60)
ATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCA > SRR4302544.4270185/1‑94 (MQ=60)
CTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGC > SRR4302544.3990475/1‑94 (MQ=60)
CCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGC > SRR4302544.412056/1‑94 (MQ=60)
CTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCC > SRR4302544.3876684/1‑94 (MQ=60)
GCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTG > SRR4302544.2015150/1‑94 (MQ=60)
AACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAA > SRR4302544.1780313/1‑94 (MQ=60)
ACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAAC > SRR4302544.1987169/1‑94 (MQ=60)
AAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACAT > SRR4302544.4275442/1‑94 (MQ=60)
agctgtctttcaactcaagaatgccgatgcaGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATC < SRR4302544.3386248/63‑1 (MQ=60)
AGGCTTCTTTCACGTAAAGAATGCCACTTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTCACAGTCGCAATCCAGCGCCTGAAAATC > SRR4302544.1778049/1‑94 (MQ=60)
AGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATC > SRR4302544.3713004/1‑94 (MQ=60)
AGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATC < SRR4302544.3386247/94‑1 (MQ=60)
AGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATC > SRR4302544.2694737/1‑94 (MQ=60)
CACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGA < SRR4302544.4441833/94‑1 (MQ=60)
AAGAATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCACTCCAGCGCCTGAACATCCACCGGATGATGCATC > SRR4302544.4621234/1‑94 (MQ=60)
AATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACC > SRR4302544.743420/1‑94 (MQ=60)
AATGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACC < SRR4302544.2594728/94‑1 (MQ=60)
ATGCCAATTCCGGTGTGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCC > SRR4302544.710414/1‑94 (MQ=60)
TGCCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGC > SRR4302544.3725733/1‑94 (MQ=60)
CCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCT > SRR4302544.2658354/1‑94 (MQ=60)
CCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCT > SRR4302544.4750319/1‑94 (MQ=60)
CCAATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCT < SRR4302544.4133264/94‑1 (MQ=60)
AATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGA > SRR4302544.1917065/1‑94 (MQ=60)
AATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGA > SRR4302544.4468384/1‑94 (MQ=60)
CTTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAG < SRR4302544.34004/94‑1 (MQ=60)
ATTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAG > SRR4302544.3626146/1‑94 (MQ=60)
TTCCGGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGC < SRR4302544.319714/94‑1 (MQ=60)
GGTGGGGCCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGGGCCA > SRR4302544.2985420/1‑94 (MQ=60)
CCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCA > SRR4302544.2120688/1‑94 (MQ=60)
CCATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCA > SRR4302544.2529142/1‑94 (MQ=60)
CATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAG < SRR4302544.1914092/94‑1 (MQ=60)
ATACAGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGC > SRR4302544.2843283/1‑94 (MQ=60)
AGTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACTT > SRR4302544.1784042/1‑94 (MQ=60)
GTTTACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACTTT < SRR4302544.3677171/94‑1 (MQ=60)
ACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACTTTTGCG < SRR4302544.4201350/94‑1 (MQ=60)
ACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACTTTTGCG < SRR4302544.4283728/94‑1 (MQ=60)
ACGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACTTTTGCG > SRR4302544.2986395/1‑94 (MQ=60)
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ATCATAGAACCGCCCCCTTCCCACGGCGGCATCTCCTGCAACAAGGCTTCTTTCACATAAAGAATGCCAATTCCGGTGGGGCCATACAGTTTATGCCCGGAGAACACGTAAAAGTCGCAATCCAGCGCCTGAACATCCACCGGATGATGCATCACCGCCTGAGCGCCATCCACCAGCACTTTTGCG > NC_000913/1757781‑1757966
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
