Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,758,261 |
T→C |
E96G (GAA→GGA) |
b1680 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,758,261 | 0 | T | C | 94.2%
| 290.9
/ 6.3
| 103 | E96G (GAA→GGA) | b1680 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (2/4); new base C (44/53); total (46/57) |
| Fisher's exact test for biased strand distribution p-value = 6.89e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 109 total aligned reads displayed.
TTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTC > NC_000913/1758171‑1758349
|
ttAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGAtccctccc > 2:3088432/1‑93 (MQ=255)
ttAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGAtccctccc < 1:3671342/93‑1 (MQ=255)
tAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCcg < 2:736217/93‑1 (MQ=255)
aGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCcgt > 2:3316477/1‑93 (MQ=255)
gtgCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGcc < 2:284737/93‑1 (MQ=255)
gtgCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGcc < 2:3379465/93‑1 (MQ=255)
tgCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCcg > 1:283981/1‑93 (MQ=255)
gCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCcgc > 1:3926997/1‑93 (MQ=255)
ccATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGa < 2:3435337/93‑1 (MQ=255)
cATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGAc < 2:3688965/93‑1 (MQ=255)
aTCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACg > 1:1088432/1‑93 (MQ=255)
aTCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACg > 1:444795/1‑93 (MQ=255)
aTCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACg < 1:223322/93‑1 (MQ=255)
tCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGa > 1:1275904/1‑93 (MQ=255)
ctgactgaTGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGaa < 2:3591656/93‑1 (MQ=255)
gactgaTGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAaca < 2:1491167/93‑1 (MQ=255)
gactgaTGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAaca > 1:768904/1‑93 (MQ=255)
tgatgatgaTGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCa > 1:207718/1‑93 (MQ=255)
gatgatgatGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAg < 2:4493425/93‑1 (MQ=255)
atgatgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGc < 2:299912/93‑1 (MQ=255)
atgatgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGc > 2:704269/1‑93 (MQ=255)
atgatgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGc < 2:3328232/93‑1 (MQ=255)
atgatgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGc < 1:185874/93‑1 (MQ=255)
gatgatgTTATCTCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGctc < 2:2100478/93‑1 (MQ=255)
gatgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGctc > 2:154684/1‑93 (MQ=255)
tgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCtt > 2:3920506/1‑93 (MQ=255)
tgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCtt < 2:750241/93‑1 (MQ=255)
gatgTTATCGCCCCCGCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTc < 1:3184241/93‑1 (MQ=255)
tATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTccgccg < 2:3800352/93‑1 (MQ=255)
tATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTccgccg < 1:2242237/93‑1 (MQ=255)
aTCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGa < 2:3262124/93‑1 (MQ=255)
aTCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGa > 2:1106388/1‑93 (MQ=255)
tCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGaa > 1:1868450/1‑93 (MQ=255)
cgcccgccCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAAc < 2:1480204/93‑1 (MQ=255)
gcccgcccGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACg < 2:3712299/93‑1 (MQ=255)
cccgcccgCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACgg > 2:2016496/1‑93 (MQ=255)
cccgcccgCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACgg < 2:4153450/93‑1 (MQ=255)
cccgcccgCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACgg < 1:597171/93‑1 (MQ=255)
ccgcccgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACggg < 2:1755232/93‑1 (MQ=255)
cgcccgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGc > 1:3495489/1‑93 (MQ=255)
cgcccgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGc < 1:4634868/93‑1 (MQ=255)
gcccgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCa < 1:971727/93‑1 (MQ=255)
ccgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGACCCCCAGCTCTTCCGCCGAACGGGCAtt > 1:45872/1‑93 (MQ=255)
ccgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCAtt > 2:730850/1‑93 (MQ=255)
ccgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCAtt > 1:45873/1‑93 (MQ=255)
ccgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCAtt < 1:2608517/93‑1 (MQ=255)
cgcACGTTGCTGTTGCCCCAGCTATTGGCGACCGGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATta < 2:4212043/93‑1 (MQ=255)
cgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATta > 1:3761053/1‑93 (MQ=255)
cgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATta > 1:1970732/1‑93 (MQ=255)
gcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATtaa > 1:4658195/1‑93 (MQ=255)
cACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATtaat > 2:869895/1‑93 (MQ=255)
aCGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATtaata > 1:3812340/1‑93 (MQ=255)
cGTTGCTGTTGCCCCAGCTATTGGCGACCCGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATtaataa < 1:1038054/93‑1 (MQ=255)
tGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACa < 1:1576841/93‑1 (MQ=255)
gCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAg > 2:2199444/1‑93 (MQ=255)
gCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAg > 1:716064/1‑93 (MQ=255)
gCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAg < 1:1960732/93‑1 (MQ=255)
gctgtGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGc < 2:921836/89‑1 (MQ=255)
cTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGc < 1:1974262/93‑1 (MQ=255)
tGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCg > 1:4314656/1‑93 (MQ=255)
tGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCg > 2:4437117/1‑93 (MQ=255)
gTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGa < 1:1507013/93‑1 (MQ=255)
ttGCCCCAGCTATTGGCGACCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGAt < 1:2795882/93‑1 (MQ=255)
ttGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGAt < 1:4535750/93‑1 (MQ=255)
gCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGc < 1:993661/93‑1 (MQ=255)
gCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGc > 2:2404563/1‑93 (MQ=255)
ccccAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCTGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGcc < 1:2420439/93‑1 (MQ=255)
cccAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGccc < 2:2722919/93‑1 (MQ=255)
cccAGCTATTGGCGACCAGATTGACCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGccc < 2:1880393/93‑1 (MQ=255)
ccAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCg > 2:3483965/1‑93 (MQ=255)
cAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGc < 1:4570417/93‑1 (MQ=255)
cAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGc > 2:328036/1‑93 (MQ=255)
aGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCt > 1:1911639/1‑93 (MQ=255)
aGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCt < 1:3347078/93‑1 (MQ=255)
gCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGTGATGCCCGCtt > 2:3554760/1‑93 (MQ=255)
gCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCtt < 2:1205806/93‑1 (MQ=255)
tATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTgc > 1:1391825/1‑93 (MQ=255)
ttGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTgcgc > 2:3873346/1‑93 (MQ=255)
ttGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTgcgc > 1:3933266/1‑93 (MQ=255)
tGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCa < 1:3736794/93‑1 (MQ=255)
gCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACg > 2:2100058/1‑93 (MQ=255)
cGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACTCCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGt < 2:852678/93‑1 (MQ=255)
cGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGt < 2:2957082/93‑1 (MQ=255)
gACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGtt > 1:3931231/1‑93 (MQ=255)
ccAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTtct < 2:1617123/93‑1 (MQ=255)
cAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTtctc > 1:3802394/1‑93 (MQ=255)
cAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTtctc < 2:3985082/93‑1 (MQ=255)
gATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCa < 1:2447435/93‑1 (MQ=255)
gATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCa < 1:2423733/93‑1 (MQ=255)
aTTGACCCCCCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCAt < 1:3559982/93‑1 (MQ=255)
gATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCAtttt > 1:594894/1‑93 (MQ=255)
gATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCGTGCGCACGTTCTCCAtttt > 1:594893/1‑93 (MQ=255)
tccctcccGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTtct > 1:48030/1‑93 (MQ=255)
tCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTtct > 1:4528507/1‑93 (MQ=255)
tCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTtct < 1:3991735/93‑1 (MQ=255)
tcgttCTGTCGTGACGCGGACGAACCCCCGCTCTTCCGCCGAACGGGGATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTtctc < 1:835893/90‑1 (MQ=255)
cccTCCCGTCGTGGCGCGGGCGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTTCGCACGTTCTCCATTTtctc < 1:835894/93‑1 (MQ=255)
cccTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTtctc > 2:2976891/1‑93 (MQ=255)
cccTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTtctc < 1:2085455/93‑1 (MQ=255)
cccTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTtctc < 2:3077953/93‑1 (MQ=255)
|
TTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTC > NC_000913/1758171‑1758349
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGTTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGGTCG > NC_000913/1758169‑1758354
|
TGTTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCC > SRR4302544.3966498/1‑94 (MQ=60)
GTTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCC < SRR4302544.294524/94‑1 (MQ=60)
TTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCG < SRR4302544.3707961/94‑1 (MQ=60)
GTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCG > SRR4302544.286940/1‑94 (MQ=60)
TGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGC > SRR4302544.3965998/1‑94 (MQ=60)
CATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACG > SRR4302544.449236/1‑94 (MQ=60)
CATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACG > SRR4302544.1099255/1‑94 (MQ=60)
ATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGA > SRR4302544.1288467/1‑94 (MQ=60)
ATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGA < SRR4302544.225637/94‑1 (MQ=60)
TGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACA > SRR4302544.776390/1‑94 (MQ=60)
CTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCA > SRR4302544.209847/1‑94 (MQ=60)
ATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCT < SRR4302544.187721/94‑1 (MQ=60)
GATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCC < SRR4302544.3214550/94‑1 (MQ=60)
GATGTTATCGCCCCCGCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCC < SRR4302544.3214549/94‑1 (MQ=60)
TATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGA < SRR4302544.2263330/94‑1 (MQ=60)
ATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAA > SRR4302544.1886510/1‑94 (MQ=60)
CCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGG < SRR4302544.603023/94‑1 (MQ=60)
CCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGC > SRR4302544.3528817/1‑94 (MQ=60)
CGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCA < SRR4302544.4680800/94‑1 (MQ=60)
GCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCAT < SRR4302544.981259/94‑1 (MQ=60)
CCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGACCCCCAGCTCTTCCGCCGAACGGGCATT > SRR4302544.46329/1‑94 (MQ=60)
CCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATT > SRR4302544.46330/1‑94 (MQ=60)
CCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATT < SRR4302544.5540/94‑1 (MQ=60)
CCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTA < SRR4302544.2633568/94‑1 (MQ=60)
CCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTA > SRR4302544.3798383/1‑94 (MQ=60)
CCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTA > SRR4302544.1989875/1‑94 (MQ=60)
CGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAA > SRR4302544.4704279/1‑94 (MQ=60)
CACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATA > SRR4302544.3850126/1‑94 (MQ=60)
CGTTGCTGTTGCCCCAGCTATTGGCGACCCGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAA < SRR4302544.1048370/94‑1 (MQ=60)
TTGNNGNNGNCCCAGCTNTTGNNNANNAGNTTGANCCCTCNCNTCNTNCCGCGGANGNNNANCANNTCTTCCGCNGAACGGGCATTAATAAACA < SRR4302544.2310994/94‑1 (MQ=32)
TGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAG < SRR4302544.1592428/94‑1 (MQ=60)
TGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAG > SRR4302544.723138/1‑94 (MQ=60)
GCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGC < SRR4302544.1979764/94‑1 (MQ=60)
CTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCG < SRR4302544.1993448/94‑1 (MQ=60)
CTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCG < SRR4302544.2043783/94‑1 (MQ=60)
CTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCG > SRR4302544.4358616/1‑94 (MQ=60)
GTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGAT < SRR4302544.1521952/94‑1 (MQ=60)
TTGCCCCAGCTATTGGCGACCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATG < SRR4302544.2822810/94‑1 (MQ=60)
TTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATG < SRR4302544.4581103/94‑1 (MQ=60)
GCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCC < SRR4302544.1003486/94‑1 (MQ=60)
CCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCTGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCC < SRR4302544.2443489/94‑1 (MQ=60)
CAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCT > SRR4302544.1930111/1‑94 (MQ=60)
CAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCT > SRR4302544.401973/1‑94 (MQ=60)
CAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCT < SRR4302544.4615975/94‑1 (MQ=60)
AGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTT < SRR4302544.3379006/94‑1 (MQ=60)
CTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGC > SRR4302544.1405721/1‑94 (MQ=60)
ATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGC > SRR4302544.3972331/1‑94 (MQ=60)
TGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCAC < SRR4302544.3773939/94‑1 (MQ=60)
CGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTT > SRR4302544.3970278/1‑94 (MQ=60)
CCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTC > SRR4302544.3840067/1‑94 (MQ=60)
GATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCAT < SRR4302544.2470771/94‑1 (MQ=60)
GATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCAT < SRR4302544.2446805/94‑1 (MQ=60)
ATTGACCCCCCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATT < SRR4302544.3594111/94‑1 (MQ=60)
TGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTT > SRR4302544.600733/1‑94 (MQ=60)
TGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCGTGCGCACGTTCTCCATTTT > SRR4302544.600732/1‑94 (MQ=60)
ATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCT > SRR4302544.4573820/1‑94 (MQ=60)
ATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCT > SRR4302544.48513/1‑94 (MQ=60)
TCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTC < SRR4302544.4031471/94‑1 (MQ=60)
CCCTCCCGTCGTGGCGCGGGCGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTTCGCACGTTCTCCATTTTCTCG < SRR4302544.844129/94‑1 (MQ=60)
CCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCG < SRR4302544.2105515/94‑1 (MQ=60)
CCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGG > SRR4302544.1753985/1‑94 (MQ=60)
TCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGGTC < SRR4302544.3961410/94‑1 (MQ=60)
TCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGGTC < SRR4302544.3238867/94‑1 (MQ=60)
TCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGGTC < SRR4302544.31793/94‑1 (MQ=60)
CCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGGTCG > SRR4302544.4082592/1‑94 (MQ=60)
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TGTTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGGTCG > NC_000913/1758169‑1758354
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
