Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,758,261	T→C	E96G (GAA→GGA)	b1680 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,758,261	0	T	C	100.0%	714.0 / NA	220	E96G (GAA→GGA)	b1680	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (105/115); total (105/115)

Only 100 of 227 total aligned reads displayed.

TTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCG  >  NC_000913/1758171‑1758350

 tAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCcg                                                                                        >  1:1898269/1‑93 (MQ=255)

    cGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCcgtcg                                                                                     >  2:4842131/1‑93 (MQ=255)

       ggtgCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGc                                                                                  >  2:6352286/1‑93 (MQ=255)

         tgCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCcg                                                                                <  2:3489521/93‑1 (MQ=255)

         cgCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCcg                                                                                <  1:2491516/92‑1 (MQ=255)

          gCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCcgc                                                                               <  1:6201736/93‑1 (MQ=255)

          gCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCcgc                                                                               >  1:2132801/1‑93 (MQ=255)

           cTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCcgcg                                                                              >  2:1605244/1‑93 (MQ=255)

            tCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGCTGTGCCGCgg                                                                             >  2:2667388/1‑93 (MQ=255)

             ccATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGa                                                                            <  1:31185/93‑1 (MQ=255)

             ccATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGa                                                                            <  2:2946132/93‑1 (MQ=255)

              cATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGGCCAGATTGATCCCTCCCGTCGTGCCGCGGAc                                                                           >  2:3341510/1‑93 (MQ=255)

                  tgactgaTGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAac                                                                       <  2:3073065/93‑1 (MQ=255)

                  tgactgaTGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAac                                                                       >  2:2379017/1‑93 (MQ=255)

                   gactgaTGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGGaca                                                                      >  1:4360495/1‑93 (MQ=255)

                   gactgaTGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAcca                                                                      >  1:1014944/1‑93 (MQ=255)

                   gactgaTGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAaca                                                                      >  2:456458/1‑93 (MQ=255)

                   gactgaTGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAaca                                                                      >  2:251029/1‑93 (MQ=255)

                   gactgaTGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAaca                                                                      >  2:2474381/1‑93 (MQ=255)

                     ctgaTGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACAcc                                                                    <  2:2229069/93‑1 (MQ=255)

                     ctgaTGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACAcc                                                                    <  1:1069639/93‑1 (MQ=255)

                        atgatgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGc                                                                 <  2:3225089/93‑1 (MQ=255)

                         tgatgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGct                                                                <  1:1963428/93‑1 (MQ=255)

                         tgatgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGct                                                                <  2:5279998/93‑1 (MQ=255)

                         tgatgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGct                                                                >  2:1476481/1‑93 (MQ=255)

                          tatgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGctc                                                               <  2:2088818/92‑1 (MQ=255)

                          gatgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGctc                                                               <  2:2358662/93‑1 (MQ=255)

                          gatgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGctc                                                               <  1:930353/93‑1 (MQ=255)

                           atgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGctct                                                              <  2:6605744/93‑1 (MQ=255)

                            tgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCtt                                                             <  1:4810177/93‑1 (MQ=255)

                            tgatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCtt                                                             <  2:5688202/93‑1 (MQ=255)

                             gatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTc                                                            >  2:1925781/1‑93 (MQ=255)

                             gatgTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCATCCCGTCGTGCCGCGGACGAACACCAGCTCTTc                                                            <  2:6545563/93‑1 (MQ=255)

                              atgTTATCGCCCGCCCGCACGTTGCTGTTACCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTcc                                                           <  2:4627863/93‑1 (MQ=255)

                                 ttATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTccgcc                                                        <  1:5412972/93‑1 (MQ=255)

                                 ttATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTccgcc                                                        >  2:5756925/1‑93 (MQ=255)

                                  tATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTccgccg                                                       <  1:4892917/93‑1 (MQ=255)

                                   aTCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGa                                                      >  1:5772550/1‑93 (MQ=255)

                                   aTCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGa                                                      >  1:2104852/1‑93 (MQ=255)

                                   aTCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGa                                                      <  1:1574821/93‑1 (MQ=255)

                                    tCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGaa                                                     <  2:6493076/93‑1 (MQ=255)

                                    tCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGaa                                                     <  2:2600199/93‑1 (MQ=255)

                                       cccgcccgCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACgg                                                  >  2:1891045/1‑93 (MQ=255)

                                       cccgcccgCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACgg                                                  <  2:5510714/93‑1 (MQ=255)

                                       cccgcccgCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACgg                                                  <  1:6293233/93‑1 (MQ=255)

                                       cccgcccgCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACgg                                                  >  1:5596864/1‑93 (MQ=255)

                                        ccgcccgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACggg                                                 >  1:1249805/1‑93 (MQ=255)

                                         cgcccgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGCACGGGc                                                >  1:4668743/1‑93 (MQ=255)

                                          gcccgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCa                                               <  2:5777300/93‑1 (MQ=255)

                                           cccgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGCACGGGCAt                                              >  1:2417195/1‑93 (MQ=255)

                                            ccgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCAtt                                             >  2:472865/1‑93 (MQ=255)

                                            ccgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCAtt                                             >  1:44182/1‑93 (MQ=255)

                                            ccgcACGTTGCTGTGGCCCCAGGTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCAtt                                             <  1:1729786/93‑1 (MQ=255)

                                             cgcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATta                                            >  2:2961779/1‑93 (MQ=255)

                                              gcgcGTTGCTGCTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGACCACCAGCTCTTCCGCCGAACGGGCATtaa                                           <  1:3071504/90‑1 (MQ=255)

                                              gcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATtaa                                           >  2:3530421/1‑93 (MQ=255)

                                              gcACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATtaa                                           <  2:2845609/93‑1 (MQ=255)

                                               cACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATtaat                                          <  1:6011105/93‑1 (MQ=255)

                                                aCGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATtaata                                         <  1:1372727/93‑1 (MQ=255)

                                                aCGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATtaata                                         >  1:2652819/1‑93 (MQ=255)

                                                aCGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATtaata                                         >  1:3175497/1‑93 (MQ=255)

                                                  gTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATaaa                                       <  2:5467337/93‑1 (MQ=255)

                                                  gTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATaaa                                       >  2:4512358/1‑93 (MQ=255)

                                                  gTTGCTGTGGCCCCAGCTACTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCATCTCTTCCGCCGGACGGGGATTAATaaa                                       >  1:6503575/1‑93 (MQ=255)

                                                   ttGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAAc                                      <  2:399798/93‑1 (MQ=255)

                                                   ttGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAAc                                      >  1:1304229/1‑93 (MQ=255)

                                                    tGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACa                                     <  2:1786791/93‑1 (MQ=255)

                                                      cTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGc                                   <  2:5998161/93‑1 (MQ=255)

                                                          tGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATg                               <  2:3749752/93‑1 (MQ=255)

                                                          tGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATg                               <  2:425879/93‑1 (MQ=255)

                                                          tGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATg                               >  2:4319814/1‑93 (MQ=255)

                                                            ccccAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCTGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGcc                             <  1:4257572/93‑1 (MQ=255)

                                                            ccccAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGcc                             >  1:807950/1‑93 (MQ=255)

                                                             cgcAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGccc                            >  1:6413127/3‑93 (MQ=255)

                                                             cccAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGccc                            >  1:4040615/1‑93 (MQ=255)

                                                              ccAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCg                           <  2:5057799/93‑1 (MQ=255)

                                                              ccAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCg                           >  1:6333899/1‑93 (MQ=255)

                                                              ccAGCTATTGGCGACCAGAGTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCg                           <  2:4453375/93‑1 (MQ=255)

                                                               cAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGc                          >  2:5643536/1‑93 (MQ=255)

                                                               cAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGc                          <  1:4184854/93‑1 (MQ=255)

                                                                aGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCt                         >  1:3751459/1‑93 (MQ=255)

                                                                aGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCt                         <  2:6034183/93‑1 (MQ=255)

                                                                aGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTACGCCGAACGGGCATTAATAAACAGCGATGCCCGCt                         >  2:3059332/1‑93 (MQ=255)

                                                                 gCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCtt                        <  1:6717772/93‑1 (MQ=255)

                                                                 gCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCtt                        >  1:3282373/1‑93 (MQ=255)

                                                                     ttGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTgcgc                    >  1:709282/1‑93 (MQ=255)

                                                                       ggCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCAc                  >  2:3931537/1‑93 (MQ=255)

                                                                       ggCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCAc                  >  2:4757944/1‑93 (MQ=255)

                                                                        gCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGTACGGGCATTAATAAACAGCGCTGGCCGCTTGCGCaat                 >  1:1476384/1‑91 (MQ=255)

                                                                         cGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGt                <  1:2930079/93‑1 (MQ=255)

                                                                         cGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGt                <  1:5457150/93‑1 (MQ=255)

                                                                          gACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGtt               <  2:4408529/93‑1 (MQ=255)

                                                                           aCCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGttt              >  1:3538083/1‑92 (MQ=255)

                                                                           aCCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTtc              <  1:3607068/93‑1 (MQ=255)

                                                                              aGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTcc           <  2:1552227/93‑1 (MQ=255)

                                                                                    aTCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTtc     <  2:3804499/93‑1 (MQ=255)

                                                                                    aTCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTtc     <  1:3883410/93‑1 (MQ=255)

                                                                                     tccctcccGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTtct    >  2:2000493/1‑93 (MQ=255)

                                                                                      cccTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTtctc   <  2:6186045/93‑1 (MQ=255)

                                                                                      cccTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTtctc   >  2:1100160/1‑93 (MQ=255)

TTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCG  >  NC_000913/1758171‑1758350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGTTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGGTCG  >  NC_000913/1758168‑1758354

ATGTTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTC                                                                                               >  SRR4302536.1763733/1‑94 (MQ=60)

ATGTTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTC                                                                                               <  SRR4302536.6110519/94‑1 (MQ=60)

 TGTTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCC                                                                                              >  SRR4302536.6425050/1‑94 (MQ=60)

  GTTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCC                                                                                             <  SRR4302536.6779794/94‑1 (MQ=60)

   TTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCG                                                                                            >  SRR4302536.1955435/1‑94 (MQ=60)

    TAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGAACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGT                                                                                           <  SRR4302536.5539257/94‑1 (MQ=60)

           GTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCG                                                                                    >  SRR4302536.3917916/1‑94 (MQ=60)

           GTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCG                                                                                    <  SRR4302536.4473047/94‑1 (MQ=60)

            TGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGC                                                                                   >  SRR4302536.2196816/1‑94 (MQ=60)

            CGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGC                                                                                   <  SRR4302536.2566671/94‑1 (MQ=60)

             GCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCG                                                                                  <  SRR4302536.6386462/94‑1 (MQ=60)

               TCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGA                                                                                >  SRR4302536.5704749/1‑94 (MQ=60)

                CCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGAC                                                                               <  SRR4302536.32048/94‑1 (MQ=60)

                 CATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACG                                                                              <  SRR4302536.661556/94‑1 (MQ=60)

                     TGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGGACA                                                                          >  SRR4302536.4490850/1‑94 (MQ=60)

                     TGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGACCA                                                                          >  SRR4302536.1044943/1‑94 (MQ=60)

                     TGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACA                                                                          <  SRR4302536.2055407/94‑1 (MQ=60)

                      GACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGGCGCGGACGAACAC                                                                         >  SRR4302536.3345348/1‑94 (MQ=60)

                      GACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACAC                                                                         <  SRR4302536.2243639/94‑1 (MQ=60)

                       ACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACC                                                                        >  SRR4302536.5601953/1‑94 (MQ=60)

                        CTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCA                                                                       >  SRR4302536.1327650/1‑94 (MQ=60)

                        CTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCA                                                                       <  SRR4302536.1101623/94‑1 (MQ=60)

                         TGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAG                                                                      <  SRR4302536.4037053/94‑1 (MQ=60)

                         TGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAG                                                                      >  SRR4302536.2430723/1‑94 (MQ=60)

                           ATGATGATGTTATCGCCCGGCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCT                                                                    <  SRR4302536.1945342/94‑1 (MQ=60)

                           ATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCT                                                                    <  SRR4302536.2993257/94‑1 (MQ=60)

                            TGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTC                                                                   >  SRR4302536.2872012/1‑94 (MQ=60)

                            TGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTC                                                                   <  SRR4302536.2022462/94‑1 (MQ=60)

                            TGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTC                                                                   >  SRR4302536.4875683/1‑94 (MQ=60)

                            TGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTC                                                                   >  SRR4302536.3714186/1‑94 (MQ=60)

                            TGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTC                                                                   <  SRR4302536.4200988/94‑1 (MQ=60)

                             GATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCT                                                                  <  SRR4302536.957763/94‑1 (MQ=60)

                             GATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCT                                                                  <  SRR4302536.2194130/94‑1 (MQ=60)

                              ATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTT                                                                 <  SRR4302536.3187002/94‑1 (MQ=60)

                               TGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTC                                                                <  SRR4302536.4954935/94‑1 (MQ=60)

                                GATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCC                                                               <  SRR4302536.1552692/94‑1 (MQ=60)

                                 ATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCC                                                              >  SRR4302536.3217216/1‑94 (MQ=60)

                                  TGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGGACACGCGCTCTTCCGC                                                             >  SRR4302536.5966950/1‑94 (MQ=60)

                                   GTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCC                                                            >  SRR4302536.314025/1‑94 (MQ=60)

                                    TTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCG                                                           <  SRR4302536.6538355/94‑1 (MQ=60)

                                    TTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCG                                                           <  SRR4302536.5574723/94‑1 (MQ=60)

                                     TATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGA                                                          >  SRR4302536.5944318/1‑94 (MQ=60)

                                     TATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGA                                                          <  SRR4302536.5040090/94‑1 (MQ=60)

                                     TATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGA                                                          >  SRR4302536.2168122/1‑94 (MQ=60)

                                      ATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAA                                                         <  SRR4302536.1620976/94‑1 (MQ=60)

                                      ATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAA                                                         <  SRR4302536.6924288/94‑1 (MQ=60)

                                        CGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACG                                                       >  SRR4302536.6774141/1‑94 (MQ=60)

                                         GCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGG                                                      >  SRR4302536.5763249/1‑94 (MQ=60)

                                          CCCTCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACCCCAGCTCTTCCGCCGAACGGG                                                     <  SRR4302536.5915486/94‑1 (MQ=60)

                                          CCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGG                                                     <  SRR4302536.6480728/94‑1 (MQ=60)

                                          CCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGG                                                     >  SRR4302536.1287328/1‑94 (MQ=60)

                                          CCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGG                                                     <  SRR4302536.2600546/94‑1 (MQ=60)

                                           CCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGCACGGGC                                                    >  SRR4302536.4809122/1‑94 (MQ=60)

                                            CGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGCCCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCA                                                   <  SRR4302536.1991012/94‑1 (MQ=60)

                                             GCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGCACGGGCAT                                                  >  SRR4302536.2490313/1‑94 (MQ=60)

                                              CCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATT                                                 >  SRR4302536.45406/1‑94 (MQ=60)

                                               CCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTA                                                >  SRR4302536.1372591/1‑94 (MQ=60)

                                               CCGCACGTTGCTGTGGCCCCAGGTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTA                                                <  SRR4302536.1779721/94‑1 (MQ=60)

                                                CGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAA                                               >  SRR4302536.4762096/1‑94 (MQ=60)

                                                 GCGCGTTGCTGCTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGACCACCAGCTCTTCCGCCGAACGGGCATTAAT                                              <  SRR4302536.3161486/94‑1 (MQ=60)

                                                  CACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATA                                             >  SRR4302536.2732258/1‑94 (MQ=60)

                                                  CACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATA                                             <  SRR4302536.6190312/94‑1 (MQ=60)

                                                  CACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATA                                             >  SRR4302536.3268570/1‑94 (MQ=60)

                                                  CACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATA                                             >  SRR4302536.3574718/1‑94 (MQ=60)

                                                   ACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAA                                            <  SRR4302536.1792491/94‑1 (MQ=60)

                                                   ACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAA                                            <  SRR4302536.1413625/94‑1 (MQ=60)

                                                    CGTTGCTGTGGCCCCAGCTACTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCATCTCTTCCGCCGGACGGGGATTAATAAA                                           >  SRR4302536.6697413/1‑94 (MQ=60)

                                                     GTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAAC                                          <  SRR4302536.47974/94‑1 (MQ=60)

                                                     GTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAAC                                          >  SRR4302536.1343179/1‑94 (MQ=60)

                                                      TTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACA                                         <  SRR4302536.1508796/94‑1 (MQ=60)

                                                      TTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACA                                         <  SRR4302536.1732608/94‑1 (MQ=60)

                                                       TGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGGCTAACACCAGCTCTTTCGCCGAACGGGCATTAATAAACAG                                        >  SRR4302536.4988699/1‑94 (MQ=60)

                                                       TGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAG                                        <  SRR4302536.1122176/94‑1 (MQ=60)

                                                         CTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCG                                      <  SRR4302536.3815882/94‑1 (MQ=60)

                                                          TGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGA                                     >  SRR4302536.6623904/1‑94 (MQ=60)

                                                            TTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATG                                   <  SRR4302536.395966/94‑1 (MQ=60)

                                                            TTGCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACAAGCTCTTCCGCCGAACGGGCATTAATAAACAGAGATG                                   >  SRR4302536.3307516/1‑94 (MQ=60)

                                                              GCCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCC                                 >  SRR4302536.831639/1‑94 (MQ=60)

                                                               CCGCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCC                                >  SRR4302536.6604739/1‑94 (MQ=60)

                                                               CCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCTGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCC                                <  SRR4302536.4384419/94‑1 (MQ=60)

                                                               CCCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCC                                >  SRR4302536.4160408/1‑94 (MQ=60)

                                                                CCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCG                               >  SRR4302536.1094232/1‑94 (MQ=60)

                                                                CCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCG                               >  SRR4302536.139659/1‑94 (MQ=60)

                                                                CCCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCG                               >  SRR4302536.6522529/1‑94 (MQ=60)

                                                                 CCAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAATACCAGCTCTTCCGCCGAACGGGCATTAATAAccagagaggtcctc                              >  SRR4302536.1570085/1‑80 (MQ=60)

                                                                  CAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCT                             >  SRR4302536.5873635/1‑94 (MQ=60)

                                                                  CAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCT                             <  SRR4302536.4309187/94‑1 (MQ=60)

                                                                  CAGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCT                             >  SRR4302536.3863565/1‑94 (MQ=60)

                                                                   AGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTT                            <  SRR4302536.2515988/94‑1 (MQ=60)

                                                                   AGCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTT                            >  SRR4302536.3378907/1‑94 (MQ=60)

                                                                    GCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTG                           <  SRR4302536.6487999/94‑1 (MQ=60)

                                                                    GCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTG                           <  SRR4302536.6917204/94‑1 (MQ=60)

                                                                    GCTATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTG                           <  SRR4302536.5666773/94‑1 (MQ=60)

                                                                      TATTGGCGGCCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCG                         >  SRR4302536.730669/1‑94 (MQ=60)

                                                                      TATTGCCGACCAGATTGACCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCG                         <  SRR4302536.6448014/94‑1 (MQ=60)

                                                                       ATTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGC                        >  SRR4302536.730022/1‑94 (MQ=60)

                                                                        TTGGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCA                       >  SRR4302536.4358502/1‑94 (MQ=60)

                                                                          GGCGCGCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACG                     <  SRR4302536.6560627/94‑1 (MQ=60)

                                                                          GGCGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGTACGGGCATTAATAAACAGCGCTGGCCGCTTGCGCAat                     >  SRR4302536.1520035/1‑92 (MQ=60)

                                                                            CGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTT                   <  SRR4302536.5620325/94‑1 (MQ=60)

                                                                            CGACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTT                   <  SRR4302536.3016537/94‑1 (MQ=60)

                                                                             GACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTT                  >  SRR4302536.3643849/1‑94 (MQ=60)

                                                                              ACCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCT                 <  SRR4302536.3714923/94‑1 (MQ=60)

                                                                               CCAGATTGATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTC                >  SRR4302536.6280301/1‑94 (MQ=60)

                                                                                       ATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCT        <  SRR4302536.6437201/94‑1 (MQ=60)

                                                                                       ATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCT        <  SRR4302536.3998925/94‑1 (MQ=60)

                                                                                       ATCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCT        <  SRR4302536.906046/94‑1 (MQ=60)

                                                                                        TCCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTC       >  SRR4302536.4532181/1‑94 (MQ=60)

                                                                                         CCCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCG      <  SRR4302536.942741/94‑1 (MQ=60)

                                                                                          CCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGG     <  SRR4302536.4361420/94‑1 (MQ=60)

                                                                                          CCTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGG     >  SRR4302536.3862315/1‑94 (MQ=60)

                                                                                           CTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGGT    >  SRR4302536.4932849/1‑94 (MQ=60)

                                                                                           CTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGGT    <  SRR4302536.5366578/94‑1 (MQ=60)

                                                                                           CTCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGAAGTTCGCTTGCGCACGTTCTCCATTTTCTCtgc    >  SRR4302536.4206792/1‑91 (MQ=60)

                                                                                            TCCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGGTC   >  SRR4302536.1860836/1‑94 (MQ=60)

                                                                                             CCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGGTCG  <  SRR4302536.1968739/94‑1 (MQ=60)

                                                                                             CCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGGTCG  <  SRR4302536.6723448/94‑1 (MQ=60)

                                                                                             CCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGGTCG  >  SRR4302536.6200092/1‑94 (MQ=60)

ATGTTAGCGTGGTGCTCCATCTGACTGATGATGATGTTATCGCCCGCCCGCACGTTGCTGTTGCCCCAGCTATTGGCGACCAGATTGATCCCTTCCGTCGTGCCGCGGACGAACACCAGCTCTTCCGCCGAACGGGCATTAATAAACAGCGATGCCCGCTTGCGCACGTTCTCCATTTTCTCGGTCG  >  NC_000913/1758168‑1758354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`