Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,778,478 |
T→C |
A18A (GCT→GCC) |
ydiR → |
putative flavoprotein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,778,478 | 0 | T | C | 97.8%
| 421.6
/ ‑0.5
| 136 | A18A (GCT→GCC) | ydiR | putative flavoprotein |
| Reads supporting (aligned to +/- strand): ref base T (2/1); new base C (71/62); total (73/63) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.57e-01 |
Only 100 of 139 total aligned reads displayed.
AAGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGG > NC_000913/1778388‑1778567
|
aagaaAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGa > 1:385081/1‑93 (MQ=255)
agaaAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGaa > 2:1543752/1‑93 (MQ=255)
agaaAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGaa > 2:3698772/1‑93 (MQ=255)
gaaAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGaat > 1:3573261/1‑92 (MQ=255)
gaaAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAAc < 1:332163/93‑1 (MQ=255)
aaaGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACt > 1:3648127/1‑93 (MQ=255)
aGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGt < 2:1076459/93‑1 (MQ=255)
cccTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGttt > 1:4294951/1‑93 (MQ=255)
cccTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGttt < 1:156431/93‑1 (MQ=255)
ccTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTg > 1:4741809/1‑93 (MQ=255)
ccTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTg < 2:1091754/93‑1 (MQ=255)
ctgaactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTgg > 1:4275713/1‑93 (MQ=255)
ctgaactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTgg > 1:3728250/1‑93 (MQ=255)
ctgaactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTgg < 1:2733193/93‑1 (MQ=255)
tgaactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggc > 1:1989056/1‑93 (MQ=255)
agagctgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggc < 2:1762625/89‑1 (MQ=255)
gaactgaaGCCTACGGACAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggcg > 2:2195831/1‑93 (MQ=255)
ctgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGCCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGgcggcg > 2:3742646/1‑93 (MQ=255)
tgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGgcgc > 1:1752186/1‑93 (MQ=255)
tgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGgcgc > 2:2047719/1‑93 (MQ=255)
gaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCt < 2:3284406/93‑1 (MQ=255)
aaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTc > 2:4509698/1‑93 (MQ=255)
aGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCa < 2:519143/93‑1 (MQ=255)
ccTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGc < 2:1461986/93‑1 (MQ=255)
tACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCaa < 1:3019196/93‑1 (MQ=255)
aCGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAAt < 2:3396026/93‑1 (MQ=255)
aCGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAAt < 1:2150865/93‑1 (MQ=255)
cGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATg < 1:2487506/93‑1 (MQ=255)
ggAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATgg < 1:2041211/93‑1 (MQ=255)
gagaAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATggg < 1:3330495/93‑1 (MQ=255)
gaagaaACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGc > 2:1993271/1‑93 (MQ=255)
gaagaaACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGc > 2:253626/1‑93 (MQ=255)
gaagaaACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGc > 2:3161250/1‑93 (MQ=255)
agaaACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCa < 1:4209147/93‑1 (MQ=255)
agaaACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCa > 2:4020351/1‑93 (MQ=255)
gaaACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCaa > 2:1714847/1‑93 (MQ=255)
gaaACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCaa > 2:517996/1‑93 (MQ=255)
aaaCGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAAc > 1:3952934/1‑93 (MQ=255)
aaCGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACa < 2:3572172/93‑1 (MQ=255)
cGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAgg > 1:1373544/1‑93 (MQ=255)
gATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGgt < 1:1107523/93‑1 (MQ=255)
gATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGgt < 1:1107522/93‑1 (MQ=255)
aTGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGgtg < 2:2130424/93‑1 (MQ=255)
aTGAGCCAATTAAACAGCGTCAGGGTCTTTAGCGATAATGCTGTACGGTATGCCGAACTGTTTGGCCGCGCTCAGCAACGGGGCCAGCAGgtg > 2:2275035/1‑93 (MQ=255)
tGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGgtgt > 2:4082124/1‑93 (MQ=255)
tGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGgtgt > 2:4082123/1‑93 (MQ=255)
tGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGgtgt > 1:542492/1‑93 (MQ=255)
cAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGcc > 1:2044844/1‑93 (MQ=255)
cAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGcc > 1:1212983/1‑93 (MQ=255)
aaTTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCa > 2:1915627/1‑93 (MQ=255)
taaCAGCGTCTTGGTCTTTAACGATTATCCTTAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGt < 1:956372/92‑1 (MQ=255)
aaaCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGt > 1:1686141/1‑93 (MQ=255)
aCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTAc > 2:4241456/1‑93 (MQ=255)
cAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACa > 2:4632226/1‑93 (MQ=255)
aGCGGCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACaa > 2:1249352/1‑93 (MQ=255)
cGTCTGGGTCTTTAGCGATAATACTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACaaaa > 1:4293374/1‑93 (MQ=255)
gTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAAt > 1:1315221/1‑93 (MQ=255)
tCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATa < 2:3460539/93‑1 (MQ=255)
cTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAc > 2:4648913/1‑93 (MQ=255)
cTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAc > 1:1582502/1‑93 (MQ=255)
tGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAcc < 2:590278/93‑1 (MQ=255)
gggTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCg < 1:2120414/93‑1 (MQ=255)
gTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGAc < 1:4462524/93‑1 (MQ=255)
tCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGAcc < 2:45243/93‑1 (MQ=255)
tCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGGCTGCCATTGTACAAAATACAGAcc > 2:3154430/1‑93 (MQ=255)
tttAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAg > 2:3238667/1‑93 (MQ=255)
tttAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAg < 1:305021/93‑1 (MQ=255)
ttAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAgg > 2:712036/1‑93 (MQ=255)
ttAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAgg < 1:2782658/93‑1 (MQ=255)
aGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGgcg > 1:1766040/1‑93 (MQ=255)
aGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGgcg > 2:357543/1‑93 (MQ=255)
gCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGgcgc < 2:4227537/93‑1 (MQ=255)
cGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgca < 1:2203808/93‑1 (MQ=255)
gATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcag > 1:3473595/1‑93 (MQ=255)
gATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcag < 2:1089458/93‑1 (MQ=255)
aTAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcagg < 1:3442719/93‑1 (MQ=255)
tAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcaggc > 2:1746613/1‑93 (MQ=255)
tAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcaggc > 1:2430373/1‑93 (MQ=255)
tAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcagga > 2:2212897/1‑92 (MQ=255)
aacccTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcaggca < 1:1446608/90‑1 (MQ=255)
aTCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcaggcag > 2:2767872/1‑93 (MQ=255)
tCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATTAGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGt < 2:1607182/93‑1 (MQ=255)
tCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGt > 1:1968216/1‑93 (MQ=255)
tCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGt > 1:4227152/1‑93 (MQ=255)
cTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTa < 1:251564/93‑1 (MQ=255)
cTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTa < 2:1872538/93‑1 (MQ=255)
tGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTAt < 1:1453175/93‑1 (MQ=255)
tGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTAt > 1:2311034/1‑93 (MQ=255)
gAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATg < 1:2450378/93‑1 (MQ=255)
gAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATg < 1:3541813/93‑1 (MQ=255)
gAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATg > 1:1998624/1‑93 (MQ=255)
gAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATg < 1:3226913/93‑1 (MQ=255)
aaCGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGc < 1:4728976/93‑1 (MQ=255)
aCGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGcc > 2:3345398/1‑93 (MQ=255)
cGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCt < 1:4402137/93‑1 (MQ=255)
ttATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTa > 1:1133755/1‑93 (MQ=255)
tATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTAt > 2:4482155/1‑93 (MQ=255)
aTGCCGAACTGTTTGGCTGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATCCCGACCAGGCGCAGGCAGTTATGCCTTATg < 1:2744757/93‑1 (MQ=255)
aTGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATg < 2:525678/93‑1 (MQ=255)
tGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATgg > 2:2820352/1‑93 (MQ=255)
|
AAGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGG > NC_000913/1778388‑1778567
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTGAAGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCCA > NC_000913/1778385‑1778571
|
CTGAAGAAAGCCCTGAACTGAAGCCTACGGGGAAGAAACGCGGAGTTAATTAAACAGCGTCTCGGTCTTTACCGATAATCCTCAACGATATGCC > SRR4302544.2003292/1‑94 (MQ=60)
GAAGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGA > SRR4302544.388997/1‑94 (MQ=60)
GAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACT < SRR4302544.335618/94‑1 (MQ=60)
GAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACT > SRR4302544.3684530/1‑94 (MQ=60)
GCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTT > SRR4302544.4338795/1‑94 (MQ=60)
CCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTG > SRR4302544.4788543/1‑94 (MQ=60)
CCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTG < SRR4302544.157965/94‑1 (MQ=60)
CCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGG > SRR4302544.3765319/1‑94 (MQ=60)
CCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGG > SRR4302544.4319369/1‑94 (MQ=60)
CTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGC < SRR4302544.139116/94‑1 (MQ=60)
CTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGC > SRR4302544.2008366/1‑94 (MQ=60)
CTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGC < SRR4302544.2759538/94‑1 (MQ=60)
TGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCG < SRR4302544.1217922/94‑1 (MQ=60)
CTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGC > SRR4302544.1769337/1‑94 (MQ=60)
GAAGCCTACGGAGAAGAAACGATGAGTCAATTAACCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTC < SRR4302544.1765614/94‑1 (MQ=60)
TACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAAT < SRR4302544.3048135/94‑1 (MQ=60)
ACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATG < SRR4302544.2171334/94‑1 (MQ=60)
CGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGG > SRR4302544.2691316/1‑94 (MQ=60)
CGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGG < SRR4302544.2511334/94‑1 (MQ=60)
GGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGG < SRR4302544.2060910/94‑1 (MQ=60)
GAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGG < SRR4302544.3362211/94‑1 (MQ=60)
ATAAACGATGAGTCAATTAATCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTTGCGGCGCTCAGCAATGGGGCCAA > SRR4302544.4242267/1‑94 (MQ=60)
AGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAA < SRR4302544.4251460/94‑1 (MQ=60)
GAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAAC > SRR4302544.3992227/1‑94 (MQ=60)
ACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGG > SRR4302544.1387233/1‑94 (MQ=60)
GATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTG < SRR4302544.1118566/94‑1 (MQ=60)
GATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTG < SRR4302544.1118565/94‑1 (MQ=60)
ATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGT > SRR4302544.547831/1‑94 (MQ=60)
ATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGT > SRR4302544.4618066/1‑94 (MQ=60)
GAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTAT < SRR4302544.3400136/94‑1 (MQ=60)
TCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCC > SRR4302544.1224993/1‑94 (MQ=60)
TCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCC > SRR4302544.2064555/1‑94 (MQ=60)
TTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTG < SRR4302544.4413683/94‑1 (MQ=60)
ATAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTG < SRR4302544.562250/94‑1 (MQ=60)
TAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGT > SRR4302544.1545139/1‑94 (MQ=60)
TAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGT > SRR4302544.1702762/1‑94 (MQ=60)
TAACAGCGTCTTGGTCTTTAACGATTATCCTTAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTA < SRR4302544.965774/94‑1 (MQ=60)
GCGTCTGGGTCTTTAGCGATAATACTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAA > SRR4302544.4337210/1‑94 (MQ=60)
CGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAAT > SRR4302544.1328159/1‑94 (MQ=60)
TCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAC > SRR4302544.1598140/1‑94 (MQ=60)
CTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACC > SRR4302544.3144883/1‑94 (MQ=60)
GGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGA < SRR4302544.3039484/94‑1 (MQ=60)
GGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGA > SRR4302544.1976090/1‑94 (MQ=60)
GGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGA < SRR4302544.2140772/94‑1 (MQ=60)
GTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACC < SRR4302544.4507437/94‑1 (MQ=60)
TTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGG < SRR4302544.308187/94‑1 (MQ=60)
TTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGC < SRR4302544.2809438/94‑1 (MQ=60)
TAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCG > SRR4302544.1783320/1‑94 (MQ=60)
TAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCG < SRR4302544.205599/94‑1 (MQ=60)
CGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAG < SRR4302544.2224564/94‑1 (MQ=60)
CGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAG > SRR4302544.3506718/1‑94 (MQ=60)
ATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGC < SRR4302544.3475622/94‑1 (MQ=60)
ATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGC > SRR4302544.3513730/1‑94 (MQ=60)
ATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGC > SRR4302544.2453520/1‑94 (MQ=60)
TAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCA < SRR4302544.3693634/94‑1 (MQ=60)
AACCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAG < SRR4302544.1460992/94‑1 (MQ=60)
ATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGT > SRR4302544.2315991/1‑94 (MQ=60)
ATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGT > SRR4302544.1987332/1‑94 (MQ=60)
ATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGT > SRR4302544.4270203/1‑94 (MQ=60)
CCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTA < SRR4302544.2109021/94‑1 (MQ=60)
CTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTAT < SRR4302544.254208/94‑1 (MQ=60)
CTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTAT > SRR4302544.2332885/1‑94 (MQ=60)
TGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATG < SRR4302544.1467612/94‑1 (MQ=60)
TGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATG > SRR4302544.2018031/1‑94 (MQ=60)
GAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGC < SRR4302544.2473754/94‑1 (MQ=60)
GAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGC < SRR4302544.2473753/94‑1 (MQ=60)
GAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGC < SRR4302544.3257774/94‑1 (MQ=60)
GAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGC < SRR4302544.3575718/94‑1 (MQ=60)
AACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCC < SRR4302544.4775639/94‑1 (MQ=60)
CGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTT < SRR4302544.4446616/94‑1 (MQ=60)
GTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTA > SRR4302544.4276229/1‑94 (MQ=60)
GTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTA > SRR4302544.1145041/1‑94 (MQ=60)
ATGCCGAACTGTTTGGCTGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATCCCGACCAGGCGCAGGCAGTTATGCCTTATGG < SRR4302544.2771206/94‑1 (MQ=60)
CCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCC < SRR4302544.1767835/94‑1 (MQ=60)
CGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCCA < SRR4302544.1274029/94‑1 (MQ=60)
CGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCCA < SRR4302544.2922026/94‑1 (MQ=60)
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CTGAAGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCCA > NC_000913/1778385‑1778571
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
