Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,778,478	T→C	A18A (GCT→GCC)	ydiR →	putative flavoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,778,478	0	T	C	100.0%	866.9 / NA	262	A18A (GCT→GCC)	ydiR	putative flavoprotein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (127/135); total (127/135)

Only 100 of 265 total aligned reads displayed.

AGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGG  >  NC_000913/1778389‑1778567

agaaAGCCCTGAACTGAAGCCTACGGAGAAGAAACTATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGaa                                                                                        <  2:850800/93‑1 (MQ=255)

agaaAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGaa                                                                                        >  1:2303386/1‑93 (MQ=255)

agaaAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGaa                                                                                        <  1:1557107/93‑1 (MQ=255)

agaaAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGaa                                                                                        >  2:4824328/1‑93 (MQ=255)

 gaaAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAAc                                                                                       >  2:6224478/1‑93 (MQ=255)

   aaGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTg                                                                                     >  2:5145059/1‑93 (MQ=255)

      cccTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGttt                                                                                  >  2:4810328/1‑93 (MQ=255)

      cccTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGttt                                                                                  <  1:3460586/93‑1 (MQ=255)

       ccTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTg                                                                                 >  2:4061151/1‑93 (MQ=255)

        ctgaactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAATAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTgg                                                                                >  2:4692006/1‑93 (MQ=255)

         tgaactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggc                                                                               <  2:5219088/93‑1 (MQ=255)

          gaactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggcg                                                                              <  1:323812/93‑1 (MQ=255)

           aactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggcgg                                                                             <  1:2501158/93‑1 (MQ=255)

           aactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggcgg                                                                             <  1:4396492/93‑1 (MQ=255)

           aactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggcgg                                                                             <  2:6673049/93‑1 (MQ=255)

            actgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggcggc                                                                            >  1:1939033/1‑93 (MQ=255)

            actgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggcggc                                                                            <  2:4989893/93‑1 (MQ=255)

               gaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCt                                                                         >  2:5346063/1‑93 (MQ=255)

               gaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCt                                                                         <  2:3712770/93‑1 (MQ=255)

                aaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTc                                                                        >  2:5795373/1‑93 (MQ=255)

                aaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTc                                                                        >  2:546253/1‑93 (MQ=255)

                aaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTc                                                                        >  2:6542842/1‑93 (MQ=255)

                 aGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCa                                                                       >  2:5757112/1‑93 (MQ=255)

                 aGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCa                                                                       >  1:1085541/1‑93 (MQ=255)

                   ccTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGc                                                                     >  2:4306353/1‑93 (MQ=255)

                    cTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCa                                                                    >  2:210722/1‑93 (MQ=255)

                      aCGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAAt                                                                  >  2:6398719/1‑93 (MQ=255)

                      aCGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAAt                                                                  >  1:2056427/1‑93 (MQ=255)

                      aCGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAAt                                                                  >  1:2667021/1‑93 (MQ=255)

                       cGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATg                                                                 <  2:4294327/93‑1 (MQ=255)

                       cGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATg                                                                 <  1:6280482/93‑1 (MQ=255)

                        ggAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATgg                                                                <  2:4899004/93‑1 (MQ=255)

                          agaagaAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATgggg                                                              >  1:4753701/1‑93 (MQ=255)

                             agaaACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCa                                                           >  2:3906234/1‑93 (MQ=255)

                              gaaACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCaa                                                          >  1:6598450/1‑93 (MQ=255)

                              gaaACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCaa                                                          <  1:4344342/93‑1 (MQ=255)

                                aaCGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACa                                                        >  2:1809472/1‑93 (MQ=255)

                                aaCGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACa                                                        >  1:3654539/1‑93 (MQ=255)

                                 aCGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAg                                                       <  1:5724959/93‑1 (MQ=255)

                                 aCGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAg                                                       >  1:3348365/1‑93 (MQ=255)

                                 aCGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAg                                                       >  2:5930210/1‑93 (MQ=255)

                                  cGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAgg                                                      >  1:5179184/1‑93 (MQ=255)

                                    aTGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGgtg                                                    >  1:5664647/1‑93 (MQ=255)

                                     tGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGgtgt                                                   <  2:1343604/93‑1 (MQ=255)

                                     tGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGgtgt                                                   <  2:3025005/93‑1 (MQ=255)

                                      gAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTa                                                  <  1:317419/93‑1 (MQ=255)

                                          cAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGcc                                              <  2:3115830/93‑1 (MQ=255)

                                           aaTTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCa                                             >  2:3320408/1‑93 (MQ=255)

                                             ttAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCAtt                                           >  1:2017447/1‑93 (MQ=255)

                                               aaaCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGt                                         >  2:2684360/1‑93 (MQ=255)

                                               aaaCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGGGTATGCCATTGt                                         >  1:1374414/1‑93 (MQ=255)

                                                aaCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTa                                        <  2:1857931/93‑1 (MQ=255)

                                                aaCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTa                                        >  1:1176382/1‑93 (MQ=255)

                                                aaCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTa                                        >  1:3115925/1‑93 (MQ=255)

                                                  cAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGTCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACa                                      <  2:3575626/93‑1 (MQ=255)

                                                   aGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACaa                                     <  1:2792658/93‑1 (MQ=255)

                                                   aGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACaa                                     >  1:1242501/1‑93 (MQ=255)

                                                    gCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACaaa                                    >  1:176028/1‑93 (MQ=255)

                                                      gTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAAt                                  >  2:4575893/1‑93 (MQ=255)

                                                      gTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAAt                                  <  1:870547/93‑1 (MQ=255)

                                                       tCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATa                                 <  1:4050225/93‑1 (MQ=255)

                                                        cTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAc                                <  2:124180/93‑1 (MQ=255)

                                                        cTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAc                                <  2:2930750/93‑1 (MQ=255)

                                                         tGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAcc                               >  1:2156870/1‑93 (MQ=255)

                                                         tGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAcc                               >  1:5481036/1‑93 (MQ=255)

                                                          gggTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCg                              <  1:1673264/93‑1 (MQ=255)

                                                           ggTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGa                             >  1:3903534/1‑93 (MQ=255)

                                                            gTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGAc                            <  1:6498295/93‑1 (MQ=255)

                                                                ttAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAgg                        >  1:6700373/1‑93 (MQ=255)

                                                                  aGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGgcg                      <  2:721250/93‑1 (MQ=255)

                                                                   gCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGgcgc                     <  2:95119/93‑1 (MQ=255)

                                                                   gCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGgcgc                     <  2:1000360/93‑1 (MQ=255)

                                                                      aTAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcagg                  >  1:2445563/1‑93 (MQ=255)

                                                                      aTAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcagg                  <  2:2451167/93‑1 (MQ=255)

                                                                      aTAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcagg                  >  1:6070310/1‑93 (MQ=255)

                                                                        aaTCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcaggca                <  2:143300/93‑1 (MQ=255)

                                                                         aTCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcaggcag               >  1:5789910/1‑93 (MQ=255)

                                                                           ccTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGtt             <  1:4835815/93‑1 (MQ=255)

                                                                           ccTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGtt             <  1:5104899/93‑1 (MQ=255)

                                                                            cTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTa            >  2:272732/1‑93 (MQ=255)

                                                                             tGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTAt           <  2:2392809/93‑1 (MQ=255)

                                                                             tGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTAt           >  2:4467932/1‑93 (MQ=255)

                                                                             tGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTAt           <  2:1664403/93‑1 (MQ=255)

                                                                              gAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCCGGCAGTTATg          >  1:4185436/1‑93 (MQ=255)

                                                                              gAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATg          >  2:155725/1‑93 (MQ=255)

                                                                               aaCGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGc         >  2:3442767/1‑93 (MQ=255)

                                                                                aCGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGcc        >  1:5878951/1‑93 (MQ=255)

                                                                                aCGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGcc        <  2:4593731/93‑1 (MQ=255)

                                                                                aCGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGcc        <  2:1999675/93‑1 (MQ=255)

                                                                                 cGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCt       <  1:3695793/93‑1 (MQ=255)

                                                                                 cGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCt       <  1:2265326/93‑1 (MQ=255)

                                                                                  gTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCtt      >  1:3893976/1‑93 (MQ=255)

                                                                                   ttATGCCGAACTGTTTGGCTGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTa     <  1:829406/93‑1 (MQ=255)

                                                                                   ttATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATCCCGACCAGGCGCAGGCAGTTATGCCTTa     <  1:4467877/93‑1 (MQ=255)

                                                                                   ttATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTa     >  2:5868488/1‑93 (MQ=255)

                                                                                   ttATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTa     >  1:4567481/1‑93 (MQ=255)

                                                                                   ttATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTa     <  2:3825845/93‑1 (MQ=255)

                                                                                    tATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTAt    <  2:5690681/93‑1 (MQ=255)

                                                                                    tATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTAt    <  1:3567749/93‑1 (MQ=255)

                                                                                      tGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATgg  >  1:6195790/1‑93 (MQ=255)

AGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGG  >  NC_000913/1778389‑1778567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTGAAGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCC  >  NC_000913/1778385‑1778570

CTGAAGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCC                                                                                              <  SRR4302536.6309896/94‑1 (MQ=60)

CTGAAGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCC                                                                                              >  SRR4302536.4696464/1‑94 (MQ=60)

 TGAAGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCG                                                                                             <  SRR4302536.4115843/94‑1 (MQ=60)

   AAGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAA                                                                                           >  SRR4302536.2373274/1‑94 (MQ=60)

    AGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAAC                                                                                          <  SRR4302536.1602838/94‑1 (MQ=60)

    AGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAAC                                                                                          >  SRR4302536.1945260/1‑94 (MQ=60)

     GAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACT                                                                                         <  SRR4302536.2312639/94‑1 (MQ=60)

     GAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACT                                                                                         <  SRR4302536.3694107/94‑1 (MQ=60)

     GAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACT                                                                                         <  SRR4302536.617024/94‑1 (MQ=60)

     GAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACT                                                                                         <  SRR4302536.1389726/94‑1 (MQ=60)

     GAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACT                                                                                         <  SRR4302536.3141003/94‑1 (MQ=60)

      AAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTG                                                                                        >  SRR4302536.3274090/1‑94 (MQ=60)

      AAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTG                                                                                        >  SRR4302536.1017662/1‑94 (MQ=60)

          CCCTGACCTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTG                                                                                    <  SRR4302536.1219112/94‑1 (MQ=60)

          CCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTG                                                                                    <  SRR4302536.3563704/94‑1 (MQ=60)

          CCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTG                                                                                    <  SRR4302536.5372981/94‑1 (MQ=60)

           CCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGG                                                                                   >  SRR4302536.5269625/1‑94 (MQ=60)

             TGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCG                                                                                 >  SRR4302536.1539623/1‑94 (MQ=60)

              GAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGG                                                                                <  SRR4302536.332404/94‑1 (MQ=60)

               AACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGC                                                                               <  SRR4302536.1659980/94‑1 (MQ=60)

               AACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGC                                                                               >  SRR4302536.1997348/1‑94 (MQ=60)

               AACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGC                                                                               <  SRR4302536.4527847/94‑1 (MQ=60)

               AACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGC                                                                               >  SRR4302536.6496912/1‑94 (MQ=60)

               AACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGC                                                                               <  SRR4302536.2576579/94‑1 (MQ=60)

                ACTGAAGCCTACGGGGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCG                                                                              >  SRR4302536.453160/1‑94 (MQ=60)

                  TGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCT                                                                            >  SRR4302536.1119675/1‑94 (MQ=60)

                    AAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCA                                                                          >  SRR4302536.1118070/1‑94 (MQ=60)

                      GCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGC                                                                        >  SRR4302536.3229643/1‑94 (MQ=60)

                        CTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAA                                                                      <  SRR4302536.864513/94‑1 (MQ=60)

                         TACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAAT                                                                     >  SRR4302536.2746799/1‑94 (MQ=60)

                         TACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAAT                                                                     >  SRR4302536.2118360/1‑94 (MQ=60)

                         TACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAAT                                                                     <  SRR4302536.3790948/94‑1 (MQ=60)

                          ACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATG                                                                    >  SRR4302536.3415097/1‑94 (MQ=60)

                           CGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGG                                                                   <  SRR4302536.6467645/94‑1 (MQ=60)

                            GGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGG                                                                  <  SRR4302536.2225720/94‑1 (MQ=60)

                            GGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGG                                                                  <  SRR4302536.4012290/94‑1 (MQ=60)

                             GAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGG                                                                 >  SRR4302536.4896798/1‑94 (MQ=60)

                              AGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGC                                                                <  SRR4302536.6453427/94‑1 (MQ=60)

                              AGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGC                                                                <  SRR4302536.5398885/94‑1 (MQ=60)

                               GAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCA                                                               >  SRR4302536.2338467/1‑94 (MQ=60)

                                AAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCA                                                              >  SRR4302536.4387591/1‑94 (MQ=60)

                                 AGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAA                                                             >  SRR4302536.6794713/1‑94 (MQ=60)

                                 AGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGAGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAA                                                             >  SRR4302536.6439253/1‑94 (MQ=60)

                                  GAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAAC                                                            <  SRR4302536.6194173/94‑1 (MQ=60)

                                  GAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAAC                                                            <  SRR4302536.4474400/94‑1 (MQ=60)

                                   AAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACA                                                           >  SRR4302536.3763788/1‑94 (MQ=60)

                                    AACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAG                                                          >  SRR4302536.3789422/1‑94 (MQ=60)

                                    AACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAG                                                          >  SRR4302536.3447624/1‑94 (MQ=60)

                                     ACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGG                                                         >  SRR4302536.518343/1‑94 (MQ=60)

                                     ACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGG                                                         <  SRR4302536.6852537/94‑1 (MQ=60)

                                     ACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGG                                                         >  SRR4302536.5333685/1‑94 (MQ=60)

                                     ACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGG                                                         <  SRR4302536.5895216/94‑1 (MQ=60)

                                     ACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGACAACAGG                                                         >  SRR4302536.4876873/1‑94 (MQ=60)

                                      CGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGT                                                        >  SRR4302536.276297/1‑94 (MQ=60)

                                       GATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTG                                                       >  SRR4302536.5833014/1‑94 (MQ=60)

                                        ATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGT                                                      >  SRR4302536.1277235/1‑94 (MQ=60)

                                          GAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTAT                                                    <  SRR4302536.325836/94‑1 (MQ=60)

                                           AGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATG                                                   >  SRR4302536.2502134/1‑94 (MQ=60)

                                              CAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCA                                                <  SRR4302536.3610496/94‑1 (MQ=60)

                                              CAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTCTATGCCA                                                <  SRR4302536.5721378/94‑1 (MQ=60)

                                               AATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCAT                                               >  SRR4302536.6619136/1‑94 (MQ=60)

                                               AATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCAT                                               <  SRR4302536.2046583/94‑1 (MQ=60)

                                                ATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATT                                              >  SRR4302536.2078159/1‑94 (MQ=60)

                                                 ATAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTG                                             <  SRR4302536.4946650/94‑1 (MQ=60)

                                                  TAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGT                                            <  SRR4302536.2070585/94‑1 (MQ=60)

                                                  TAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGGGTATGCCATTGT                                            >  SRR4302536.1415367/1‑94 (MQ=60)

                                                   AAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTA                                           >  SRR4302536.3206953/1‑94 (MQ=60)

                                                   AAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTA                                           <  SRR4302536.5883536/94‑1 (MQ=60)

                                                   AAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTA                                           >  SRR4302536.1211794/1‑94 (MQ=60)

                                                    AACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGGGGATGCCATTGTAC                                          >  SRR4302536.457412/1‑94 (MQ=60)

                                                     ACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGAACA                                         <  SRR4302536.529979/94‑1 (MQ=60)

                                                      CAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAA                                        >  SRR4302536.1279813/1‑94 (MQ=60)

                                                      CAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAA                                        >  SRR4302536.1903467/1‑94 (MQ=60)

                                                       AGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAA                                       >  SRR4302536.180644/1‑94 (MQ=60)

                                                       AGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAA                                       <  SRR4302536.2875534/94‑1 (MQ=60)

                                                       AGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAA                                       >  SRR4302536.4123595/1‑94 (MQ=60)

                                                         CGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAAT                                     <  SRR4302536.1562484/94‑1 (MQ=60)

                                                          GTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGTGCCAACAGGCGTATGCCATTGTACAAAATA                                    >  SRR4302536.5960518/1‑94 (MQ=60)

                                                          GTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATA                                    >  SRR4302536.3495137/1‑94 (MQ=60)

                                                          GTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATA                                    <  SRR4302536.246574/94‑1 (MQ=60)

                                                          GTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATA                                    >  SRR4302536.5964216/1‑94 (MQ=60)

                                                          GTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATA                                    <  SRR4302536.896192/94‑1 (MQ=60)

                                                          GTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATA                                    <  SRR4302536.6726460/94‑1 (MQ=60)

                                                           TCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAC                                   <  SRR4302536.4170292/94‑1 (MQ=60)

                                                           TCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAC                                   <  SRR4302536.4504320/94‑1 (MQ=60)

                                                            CTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACC                                  >  SRR4302536.5644706/1‑94 (MQ=60)

                                                            CTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACC                                  <  SRR4302536.4056440/94‑1 (MQ=60)

                                                            CTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACC                                  <  SRR4302536.838808/94‑1 (MQ=60)

                                                            CTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACC                                  >  SRR4302536.2221712/1‑94 (MQ=60)

                                                            CTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACC                                  <  SRR4302536.2722428/94‑1 (MQ=60)

                                                             TGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCG                                 >  SRR4302536.336486/1‑94 (MQ=60)

                                                              GGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGA                                >  SRR4302536.4019566/1‑94 (MQ=60)

                                                              GGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGA                                <  SRR4302536.1721788/94‑1 (MQ=60)

                                                               GGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGAC                               >  SRR4302536.4709825/1‑94 (MQ=60)

                                                                GTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACC                              <  SRR4302536.6692005/94‑1 (MQ=60)

                                                                GTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACC                              >  SRR4302536.3315581/1‑94 (MQ=60)

                                                                   TTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGTCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGG                           <  SRR4302536.2543541/94‑1 (MQ=60)

                                                                   TTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGG                           >  SRR4302536.6899388/1‑94 (MQ=60)

                                                                   TTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGG                           <  SRR4302536.943330/94‑1 (MQ=60)

                                                                      AGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGC                        >  SRR4302536.4254487/1‑94 (MQ=60)

                                                                       GCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCG                       >  SRR4302536.1735292/1‑94 (MQ=60)

                                                                         GATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGG                     >  SRR4302536.2519462/1‑94 (MQ=60)

                                                                         GATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGG                     >  SRR4302536.6251391/1‑94 (MQ=60)

                                                                          ATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGC                    <  SRR4302536.30668/94‑1 (MQ=60)

                                                                           TAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCA                   <  SRR4302536.493807/94‑1 (MQ=60)

                                                                            AATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAG                  <  SRR4302536.2121505/94‑1 (MQ=60)

                                                                            AATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAG                  <  SRR4302536.3910430/94‑1 (MQ=60)

                                                                            AATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAG                  >  SRR4302536.5962269/1‑94 (MQ=60)

                                                                             ATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGT                 <  SRR4302536.2773346/94‑1 (MQ=60)

                                                                              TCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTT                <  SRR4302536.2217070/94‑1 (MQ=60)

                                                                               CCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTA               <  SRR4302536.4981368/94‑1 (MQ=60)

                                                                               CCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTA               >  SRR4302536.1627819/1‑94 (MQ=60)

                                                                               CCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTA               <  SRR4302536.5257496/94‑1 (MQ=60)

                                                                                CTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTAT              <  SRR4302536.58964/94‑1 (MQ=60)

                                                                                CTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTAT              <  SRR4302536.4257798/94‑1 (MQ=60)

                                                                                CTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTAT              >  SRR4302536.3590196/1‑94 (MQ=60)

                                                                                 TGAGCGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTGTGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATG             <  SRR4302536.2557520/94‑1 (MQ=60)

                                                                                 TGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCCGGCAGTTATG             >  SRR4302536.4309797/1‑94 (MQ=60)

                                                                                   AACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCC           >  SRR4302536.6054076/1‑94 (MQ=60)

                                                                                   AACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCC           >  SRR4302536.3892866/1‑94 (MQ=60)

                                                                                   AACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCC           <  SRR4302536.62676/94‑1 (MQ=60)

                                                                                   AACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCC           >  SRR4302536.4655105/1‑94 (MQ=60)

                                                                                     CGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTT         <  SRR4302536.3806316/94‑1 (MQ=60)

                                                                                     CGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTT         <  SRR4302536.2333943/94‑1 (MQ=60)

                                                                                     CGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTT         >  SRR4302536.4009753/1‑94 (MQ=60)

                                                                                      GTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTA        >  SRR4302536.4704540/1‑94 (MQ=60)

                                                                                       TTATGCCGAACTGTTTGGCTGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTAT       <  SRR4302536.853817/94‑1 (MQ=60)

                                                                                       TTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATCCCGACCAGGCGCAGGCAGTTATGCCTTAT       <  SRR4302536.4602095/94‑1 (MQ=60)

                                                                                        TATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATG      <  SRR4302536.3674411/94‑1 (MQ=60)

                                                                                        TATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGACCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATG      <  SRR4302536.4496998/94‑1 (MQ=60)

                                                                                         ATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGG     <  SRR4302536.5850375/94‑1 (MQ=60)

                                                                                         ATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGG     <  SRR4302536.6897044/94‑1 (MQ=60)

                                                                                         ATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGG     >  SRR4302536.6380340/1‑94 (MQ=60)

                                                                                         ATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGG     <  SRR4302536.2100723/94‑1 (MQ=60)

                                                                                          TGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGT    <  SRR4302536.78039/94‑1 (MQ=60)

                                                                                           GCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTC   <  SRR4302536.2931567/94‑1 (MQ=60)

                                                                                           GCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTC   >  SRR4302536.6022232/1‑94 (MQ=60)

                                                                                            CCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCC  <  SRR4302536.3016873/94‑1 (MQ=60)

CTGAAGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCC  >  NC_000913/1778385‑1778570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`