Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,788,045 |
A→G |
S408S (AGT→AGC) |
b1706 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,788,045 | 0 | A | G | 96.4%
| 337.4
/ 1.3
| 112 | S408S (AGT→AGC) | b1706 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/3); new base G (60/48); total (61/51) |
| Fisher's exact test for biased strand distribution p-value = 3.29e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 |
Only 100 of 119 total aligned reads displayed.
ACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTAGC > NC_000913/1787955‑1788135
|
aCCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGAcgctcgct > 2:239865/1‑93 (MQ=255)
cccTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTa > 1:2465511/1‑93 (MQ=255)
cccTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTa < 1:4109750/93‑1 (MQ=255)
ccTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTAt < 2:50648/93‑1 (MQ=255)
ccTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTAt < 1:2065187/93‑1 (MQ=255)
ttttCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCg > 2:3067647/1‑93 (MQ=255)
tttCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGc > 1:346341/1‑93 (MQ=255)
tCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCtcgctatcgcta < 2:1100768/93‑1 (MQ=255)
cTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATGCCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTaa < 1:1989368/93‑1 (MQ=255)
tGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAAc > 1:3163011/1‑93 (MQ=255)
gCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAAcc < 2:3340778/93‑1 (MQ=255)
gCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAAcc < 2:3478287/93‑1 (MQ=255)
cTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGt > 1:3157780/1‑93 (MQ=255)
cTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGt < 2:3044657/93‑1 (MQ=255)
ttCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTc > 2:66019/1‑93 (MQ=255)
ttCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTc > 1:3806556/1‑93 (MQ=255)
tCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCt < 2:587095/93‑1 (MQ=255)
cAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCtt < 1:2613252/93‑1 (MQ=255)
cAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCtt > 1:82417/1‑93 (MQ=255)
cAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCCGACGCTCGCTATCGCTAACCTCGTCtt > 1:2401013/1‑93 (MQ=255)
aaTCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCttg < 1:1208104/93‑1 (MQ=255)
aTCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCttgt > 1:713143/1‑93 (MQ=255)
tCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCttgtt > 1:2281715/1‑93 (MQ=255)
tCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCttgtt < 2:39201/93‑1 (MQ=255)
cGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCttgttg < 1:4652604/93‑1 (MQ=255)
gCCCGTTGCGCCAACCAGGTGCGCAATACCAGAGCGGGGCTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGc > 2:3648182/1‑93 (MQ=255)
ccGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCaa < 2:4638748/93‑1 (MQ=255)
ccGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCaa > 1:1650108/1‑93 (MQ=255)
ccGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCaa > 1:3945428/1‑93 (MQ=255)
ccGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCaa > 2:2102628/1‑93 (MQ=255)
cGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCaaa < 1:4686356/93‑1 (MQ=255)
cGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCaaa < 1:4686357/93‑1 (MQ=255)
cGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCaaa > 2:3987089/1‑93 (MQ=255)
gtagcgcCAACCAGTTGCGCAATTCCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCTTCTTGTTGCAAAc < 2:4327266/90‑1 (MQ=255)
gTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAAc < 1:1326850/93‑1 (MQ=255)
gcgcCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGcc < 1:4035146/93‑1 (MQ=255)
cgcCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGccc < 1:3008649/93‑1 (MQ=255)
cgcCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCACTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGccc > 2:1124868/1‑93 (MQ=255)
gcCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGcccc < 2:2178404/93‑1 (MQ=255)
gcCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGcccc < 1:2519809/93‑1 (MQ=255)
gcCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGcccc > 2:2141349/1‑93 (MQ=255)
gcCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGcccc > 1:2957916/1‑93 (MQ=255)
ccAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGccccc > 1:3539701/1‑93 (MQ=255)
ccAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGccccc < 1:2877459/93‑1 (MQ=255)
aaCCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGa > 1:2309654/1‑93 (MQ=255)
aaCCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGa > 2:2656894/1‑93 (MQ=255)
ccAGTTGCGCAATCCCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTCTCGCTAACCTCGTCTTGTTGCAAACGCCCCCCATa > 1:810546/1‑93 (MQ=255)
ccAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATa > 1:810547/1‑93 (MQ=255)
ccAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATa > 2:1859728/1‑93 (MQ=255)
ccAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATa > 2:1859725/1‑93 (MQ=255)
gTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACg < 1:2737013/93‑1 (MQ=255)
gcAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCaa > 1:3928424/1‑93 (MQ=255)
gcAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCaa > 2:3048490/1‑93 (MQ=255)
aaTACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAAc > 2:2357736/1‑93 (MQ=255)
aaTACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAAc > 1:4569313/1‑93 (MQ=255)
aaTACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAAc > 1:1390827/1‑93 (MQ=255)
aaTACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAAc > 1:1768913/1‑93 (MQ=255)
tACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCa > 2:1104708/1‑93 (MQ=255)
tACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCa > 2:3854426/1‑93 (MQ=255)
aCCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAg > 2:690945/1‑93 (MQ=255)
cAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGtc > 1:1958130/1‑93 (MQ=255)
agagCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGtca < 2:1293119/93‑1 (MQ=255)
gagCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGtcat > 1:2821823/1‑93 (MQ=255)
gagCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGtcat < 2:654343/93‑1 (MQ=255)
gCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGtcatca > 2:4609622/1‑93 (MQ=255)
tgggTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCaaa > 2:3617225/2‑93 (MQ=255)
ggggTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCaaa < 1:3897064/93‑1 (MQ=255)
gtgTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAAt < 2:4285778/91‑1 (MQ=255)
gggTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAAt < 1:1697328/93‑1 (MQ=255)
ggTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATg < 2:1364536/93‑1 (MQ=255)
gTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGc < 1:4605302/93‑1 (MQ=255)
ttAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGcc > 2:4735560/1‑93 (MQ=255)
ttAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGcc > 1:1931638/1‑93 (MQ=255)
cGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCAc < 2:526407/93‑1 (MQ=255)
gCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACg > 2:2346575/1‑93 (MQ=255)
cTTTGCATCAGTTGCTGGCGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGa < 2:220286/93‑1 (MQ=255)
cTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGa < 2:1344109/93‑1 (MQ=255)
cTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGa < 1:2973917/93‑1 (MQ=255)
ttGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATc < 2:2306188/93‑1 (MQ=255)
tGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCa > 1:1679229/1‑93 (MQ=255)
tGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCa > 1:2709964/1‑93 (MQ=255)
cATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAAt < 2:1239960/93‑1 (MQ=255)
aTCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATa < 1:2455028/93‑1 (MQ=255)
tCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATaa > 1:2990263/1‑93 (MQ=255)
tCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATaa > 2:2118235/1‑93 (MQ=255)
cAGTTGCAGACGCTCGCTATCGCTAACCTCGTCGTGTTGCAAACGCCTCCGATAACGGGCAACCCAGTCATCAAATGCCGCACGATCAATaaa < 2:1371/93‑1 (MQ=255)
aGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAAc > 1:3525419/1‑93 (MQ=255)
aGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAAc < 2:673471/93‑1 (MQ=255)
ttGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACtc < 1:1026765/93‑1 (MQ=255)
ttGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACtc > 2:4471426/1‑93 (MQ=255)
ttGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACtc > 2:2917223/1‑93 (MQ=255)
gCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCAGCACGATCAATAAACtcat > 1:1436927/1‑93 (MQ=255)
tGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATCAACtcataa > 2:1858437/1‑91 (MQ=255)
tGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACtcatca < 1:1307553/93‑1 (MQ=255)
gACGCTCGCTCTCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCAc > 2:4347789/1‑93 (MQ=255)
cgctcgctATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGt > 1:208304/1‑93 (MQ=255)
cgctcgctATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGt < 1:2793508/93‑1 (MQ=255)
gCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTa < 2:3896453/93‑1 (MQ=255)
ccTCGCTATCGCTAACCTCGTCTTTTTGCAAACGCCCCCGATAACGGGCCAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTa < 1:1095027/92‑1 (MQ=255)
tCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTAGc < 1:649534/93‑1 (MQ=255)
|
ACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTAGC > NC_000913/1787955‑1788135
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTAGCGGT > NC_000913/1787952‑1788138
|
ATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCG > SRR4302544.3642396/1‑94 (MQ=60)
CACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCT < SRR4302544.3409808/94‑1 (MQ=60)
CACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCT < SRR4302544.3915644/94‑1 (MQ=60)
ACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTA > SRR4302544.2489058/1‑94 (MQ=60)
CCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTAT > SRR4302544.510850/1‑94 (MQ=60)
CCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTAT < SRR4302544.4150601/94‑1 (MQ=60)
CCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATC < SRR4302544.2085033/94‑1 (MQ=60)
CCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATC < SRR4302544.3692649/94‑1 (MQ=60)
TTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGC > SRR4302544.349905/1‑94 (MQ=60)
CTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATGCCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAAC < SRR4302544.2008681/94‑1 (MQ=60)
CTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAAC > SRR4302544.3193098/1‑94 (MQ=60)
GCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGT > SRR4302544.3187816/1‑94 (MQ=60)
CTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTC > SRR4302544.3844277/1‑94 (MQ=60)
TCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTT > SRR4302544.83209/1‑94 (MQ=60)
TCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCCGACGCTCGCTATCGCTAACCTCGTCTT > SRR4302544.2423794/1‑94 (MQ=60)
CAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTG < SRR4302544.2638343/94‑1 (MQ=60)
AATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGT < SRR4302544.1220070/94‑1 (MQ=60)
AATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGT > SRR4302544.720206/1‑94 (MQ=60)
ATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTT > SRR4302544.2303213/1‑94 (MQ=60)
CGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGC < SRR4302544.4698649/94‑1 (MQ=60)
CCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAA > SRR4302544.1666386/1‑94 (MQ=60)
CCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAA > SRR4302544.3984631/1‑94 (MQ=60)
CCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAA < SRR4302544.3172810/94‑1 (MQ=60)
CGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAAC < SRR4302544.4732679/94‑1 (MQ=60)
CGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAAC < SRR4302544.4732678/94‑1 (MQ=60)
CGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAAC < SRR4302544.2151079/94‑1 (MQ=60)
GTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACG < SRR4302544.1339897/94‑1 (MQ=60)
GCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCC < SRR4302544.4075337/94‑1 (MQ=60)
CGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCC > SRR4302544.2883322/1‑94 (MQ=60)
CGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCC > SRR4302544.2986316/1‑94 (MQ=60)
CGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCC < SRR4302544.3037486/94‑1 (MQ=60)
GCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCC < SRR4302544.2544017/94‑1 (MQ=60)
GCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCC > SRR4302544.3573571/1‑94 (MQ=60)
GCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCC < SRR4302544.1846871/94‑1 (MQ=60)
CCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCG < SRR4302544.2905230/94‑1 (MQ=60)
CAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGA > SRR4302544.2331489/1‑94 (MQ=60)
ACCAGTTGCGCAATCCCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTCTCGCTAACCTCGTCTTGTTGCAAACGCCCCCCATA > SRR4302544.818449/1‑94 (MQ=60)
ACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATA > SRR4302544.818450/1‑94 (MQ=60)
AGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACG < SRR4302544.256391/94‑1 (MQ=60)
GTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGG < SRR4302544.2763398/94‑1 (MQ=60)
CGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAA > SRR4302544.3967438/1‑94 (MQ=60)
CAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGCTAACGGGCAAAC > SRR4302544.1404710/1‑94 (MQ=60)
CAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAAC > SRR4302544.1786228/1‑94 (MQ=60)
CAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAAC > SRR4302544.4614861/1‑94 (MQ=60)
CAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAAC > SRR4302544.1404709/1‑94 (MQ=60)
ACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGT < SRR4302544.856132/94‑1 (MQ=60)
CCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTC > SRR4302544.1977125/1‑94 (MQ=60)
AGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCAT > SRR4302544.2849082/1‑94 (MQ=60)
GGGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAAT < SRR4302544.3935768/94‑1 (MQ=60)
GGGTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATG < SRR4302544.1714076/94‑1 (MQ=60)
GTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCC > SRR4302544.1950330/1‑94 (MQ=60)
GTTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCC < SRR4302544.4651062/94‑1 (MQ=60)
TTAACGCTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCG < SRR4302544.4493201/94‑1 (MQ=60)
CTTTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGAT < SRR4302544.3002443/94‑1 (MQ=60)
TTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCA > SRR4302544.1695765/1‑94 (MQ=60)
TTGCATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCA > SRR4302544.2736027/1‑94 (MQ=60)
ATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAA > SRR4302544.3018940/1‑94 (MQ=60)
ATCAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAA < SRR4302544.2478448/94‑1 (MQ=60)
CAGTTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAAC > SRR4302544.3559107/1‑94 (MQ=60)
TTGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCA < SRR4302544.1037007/94‑1 (MQ=60)
TGCTGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCAGCACGATCAATAAACTCAT > SRR4302544.1451236/1‑94 (MQ=60)
TGACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCAC < SRR4302544.1320411/94‑1 (MQ=60)
ACGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGT > SRR4302544.210442/1‑94 (MQ=60)
CGCTCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTA < SRR4302544.2820407/94‑1 (MQ=60)
TCGCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTAGCG < SRR4302544.3057243/94‑1 (MQ=60)
TCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTAGCG < SRR4302544.655955/94‑1 (MQ=60)
GCTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTAGCGGT > SRR4302544.3625273/1‑94 (MQ=60)
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ATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTAGCGGT > NC_000913/1787952‑1788138
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
