Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,789,986 |
T→C |
D20G (GAC→GGC) |
b1707 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,789,986 | 0 | T | C | 99.3%
| 469.5
/ ‑4.5
| 147 | D20G (GAC→GGC) | b1707 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (67/78); total (69/78) |
| Fisher's exact test for biased strand distribution p-value = 4.66e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.02e-01 |
Only 100 of 154 total aligned reads displayed.
GCTATAACCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGTCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGTTTTTC > NC_000913/1789896‑1790074
|
gcTATAACCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGcct > 1:2874924/1‑93 (MQ=255)
cTATAACCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGcctc > 1:2911420/1‑93 (MQ=255)
cTATAACCCGACTCGTCGGGATACGAACAGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGcctc > 1:4127393/1‑93 (MQ=255)
taccccGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTa < 2:662176/90‑1 (MQ=255)
taACCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTa < 2:662177/93‑1 (MQ=255)
aaCCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTAt > 2:1839803/1‑93 (MQ=255)
aaCCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTAt < 2:3277885/93‑1 (MQ=255)
aaCCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTAt < 1:4420871/93‑1 (MQ=255)
aCCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATc < 2:4583702/93‑1 (MQ=255)
gACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCa < 1:1081389/93‑1 (MQ=255)
cTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAgg > 2:1560975/1‑93 (MQ=255)
cTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAgg < 2:2676467/93‑1 (MQ=255)
tcgtcgGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGa > 2:765550/1‑93 (MQ=255)
tcgtcgGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGa > 2:2404427/1‑93 (MQ=255)
tcgGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGCAAt > 2:3950371/1‑93 (MQ=255)
tcgGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAAt < 1:718480/93‑1 (MQ=255)
tcgGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAAt > 1:3785774/1‑93 (MQ=255)
tcgGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAAt > 1:3941083/1‑93 (MQ=255)
tcgGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAAt < 2:413821/93‑1 (MQ=255)
tcgGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAAt > 1:1793690/1‑93 (MQ=255)
gggATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAg < 2:2053988/93‑1 (MQ=255)
ggATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGc < 1:2593877/93‑1 (MQ=255)
ggATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGc < 1:3918235/93‑1 (MQ=255)
aTACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCaa < 2:2081348/93‑1 (MQ=255)
tACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAAt > 2:4139214/1‑93 (MQ=255)
cGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCa > 2:2386218/1‑93 (MQ=255)
cGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCa > 2:1969275/1‑93 (MQ=255)
aaCCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGa < 1:1675991/93‑1 (MQ=255)
aCCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGaa < 2:1394382/93‑1 (MQ=255)
aCCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGaa > 2:3738494/1‑93 (MQ=255)
ccGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAAt < 2:2007477/93‑1 (MQ=255)
ccGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAAt < 2:1895552/93‑1 (MQ=255)
ccGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAAt > 1:234415/1‑93 (MQ=255)
gTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGa < 2:2592649/93‑1 (MQ=255)
tACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGAt < 2:365432/93‑1 (MQ=255)
aCCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATa < 1:4657548/93‑1 (MQ=255)
ccATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATaa > 1:3666519/1‑93 (MQ=255)
ccATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATaa > 1:4269479/1‑93 (MQ=255)
cATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATaaa > 2:4508905/1‑93 (MQ=255)
aTCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAg < 1:447538/93‑1 (MQ=255)
tCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGa < 2:3751497/93‑1 (MQ=255)
cTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGAt < 2:2815161/93‑1 (MQ=255)
cTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGAt < 1:1447098/93‑1 (MQ=255)
cTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGAt > 1:2009938/1‑93 (MQ=255)
ttCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGAtt > 2:1265366/1‑93 (MQ=255)
ttCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGAtt > 2:4259080/1‑93 (MQ=255)
tCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATtc > 1:4336322/1‑93 (MQ=255)
tCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATtc < 1:850647/93‑1 (MQ=255)
ggAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCaa < 1:2997869/93‑1 (MQ=255)
gagaAATGGGTAATTAACTCAACTCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCaaa < 1:2290273/93‑1 (MQ=255)
agaAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCaaaa < 1:319540/93‑1 (MQ=255)
gaAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCaaaaa > 2:3272457/1‑93 (MQ=255)
gaAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCaaaaa > 2:4264552/1‑93 (MQ=255)
gaAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCaaaaa > 2:1600447/1‑93 (MQ=255)
aaTGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCaaaaaaa < 1:1953683/93‑1 (MQ=255)
aaTGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCaaaaaaa > 2:4091431/1‑93 (MQ=255)
gggTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCt > 2:3600017/1‑93 (MQ=255)
ggTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCtt < 1:2492803/93‑1 (MQ=255)
ggTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCtt < 2:2687559/93‑1 (MQ=255)
gTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTc < 1:108405/93‑1 (MQ=255)
tAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCa < 1:569575/93‑1 (MQ=255)
tAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCa < 2:3963734/93‑1 (MQ=255)
tAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCa < 1:278398/93‑1 (MQ=255)
aaTTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCAt > 2:3580551/1‑93 (MQ=255)
aTTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATg > 1:3220229/1‑93 (MQ=255)
ttAACTCAACGCCGACAAGGACTTGCTGGTTGACTCTTATCGGCAGGAAATAGGCATCACAATGATCCAAATTCTCCAAAAAAATCTTGATgg > 2:3689246/1‑93 (MQ=255)
aaCTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTa > 1:673821/1‑93 (MQ=255)
aaCTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTa < 2:3647878/93‑1 (MQ=255)
aCTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTaa > 1:3338647/1‑93 (MQ=255)
cTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCCTGGCAAc > 2:586453/1‑93 (MQ=255)
cTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAAc > 2:2315718/1‑93 (MQ=255)
tCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAAcc > 1:2867505/1‑93 (MQ=255)
cAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCg > 1:4161631/1‑93 (MQ=255)
aaCGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGt < 1:2293554/93‑1 (MQ=255)
aCGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTc > 2:1295235/1‑93 (MQ=255)
aCGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTc > 1:1564590/1‑93 (MQ=255)
cGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTcc < 2:1719916/93‑1 (MQ=255)
gaagACAAGGGCTTGCTGGTTGACTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAAGCTTCATGGTAACCGTccc < 2:1637401/90‑1 (MQ=255)
gCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTccc < 1:4051496/93‑1 (MQ=255)
gCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTccc < 2:1637397/93‑1 (MQ=255)
gCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTccc > 1:3545697/1‑93 (MQ=255)
gCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTccc < 2:3797781/93‑1 (MQ=255)
gCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTccc < 2:473306/93‑1 (MQ=255)
ccGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCct < 1:1774460/93‑1 (MQ=255)
cGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCctc < 1:802232/93‑1 (MQ=255)
gACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCctct > 1:3392170/1‑93 (MQ=255)
gACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCctct > 2:2730369/1‑93 (MQ=255)
gACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCctct < 1:723654/93‑1 (MQ=255)
gACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATCATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCctct > 2:1447926/1‑93 (MQ=255)
aaGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGa > 1:1384338/1‑93 (MQ=255)
aaGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGa > 2:2161456/1‑93 (MQ=255)
aaGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGa > 2:2575548/1‑93 (MQ=255)
aGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGaa > 1:263160/1‑93 (MQ=255)
aGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGaa > 1:2603913/1‑93 (MQ=255)
ggACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAg < 2:2272720/93‑1 (MQ=255)
cTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGAt < 1:377904/93‑1 (MQ=255)
tGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGt > 2:2928529/1‑93 (MQ=255)
gCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGtt < 1:2500567/93‑1 (MQ=255)
cTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGttt < 1:3371645/93‑1 (MQ=255)
cTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGttt > 1:4062714/1‑93 (MQ=255)
|
GCTATAACCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGTCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGTTTTTC > NC_000913/1789896‑1790074
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCTATAACCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGTCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGTTTTTCAGTAT > NC_000913/1789895‑1790079
|
CGCTATAACCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCT > SRR4302544.2902675/1‑94 (MQ=60)
GCTATAACCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTC > SRR4302544.2939431/1‑94 (MQ=60)
GCTATAACCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTC > SRR4302544.4743892/1‑94 (MQ=60)
GCTATAACCCGACTCGTCGGGATACGAACAGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTC > SRR4302544.4168326/1‑94 (MQ=60)
CTATAACCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCT < SRR4302544.3987529/94‑1 (MQ=60)
AACCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATC < SRR4302544.4465480/94‑1 (MQ=60)
CCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGC < SRR4302544.1737849/94‑1 (MQ=60)
GACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAG < SRR4302544.1092144/94‑1 (MQ=60)
GTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAAT > SRR4302544.1811226/1‑94 (MQ=60)
GTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAAT > SRR4302544.3980234/1‑94 (MQ=60)
GTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAAT > SRR4302544.3823259/1‑94 (MQ=60)
GTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAAT > SRR4302544.4322760/1‑94 (MQ=60)
TCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATA < SRR4302544.725572/94‑1 (MQ=60)
TCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATA < SRR4302544.2933226/94‑1 (MQ=60)
TCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATA < SRR4302544.2343895/94‑1 (MQ=60)
GGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCA < SRR4302544.3957149/94‑1 (MQ=60)
GGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCA < SRR4302544.2618825/94‑1 (MQ=60)
GGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCA > SRR4302544.3484809/1‑94 (MQ=60)
ATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAAT < SRR4302544.3052299/94‑1 (MQ=60)
AACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAA < SRR4302544.1692493/94‑1 (MQ=60)
ACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAAT > SRR4302544.236854/1‑94 (MQ=60)
ACCGTACAATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAAT < SRR4302544.426819/94‑1 (MQ=60)
CCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATG < SRR4302544.1838711/94‑1 (MQ=60)
GTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGAT < SRR4302544.774338/94‑1 (MQ=60)
ACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAA > SRR4302544.3703084/1‑94 (MQ=60)
ACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAA < SRR4302544.4703630/94‑1 (MQ=60)
ACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAA > SRR4302544.4313047/1‑94 (MQ=60)
ATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGA < SRR4302544.451993/94‑1 (MQ=60)
ATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGA > SRR4302544.4147141/1‑94 (MQ=60)
TCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGAT > SRR4302544.2029466/1‑94 (MQ=60)
TCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGAT < SRR4302544.3873170/94‑1 (MQ=60)
CTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATT < SRR4302544.1461485/94‑1 (MQ=60)
TTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTC > SRR4302544.4380455/1‑94 (MQ=60)
TCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCT < SRR4302544.859055/94‑1 (MQ=60)
GGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAA < SRR4302544.3026613/94‑1 (MQ=60)
GAGAAATGGGTAATTAACTCAACTCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAA < SRR4302544.2311860/94‑1 (MQ=60)
AGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAA < SRR4302544.322861/94‑1 (MQ=60)
AATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAAT < SRR4302544.1972634/94‑1 (MQ=60)
TGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCT > SRR4302544.971739/1‑94 (MQ=60)
GGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTT > SRR4302544.3317065/1‑94 (MQ=60)
GGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTC < SRR4302544.2516675/94‑1 (MQ=60)
GTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCA < SRR4302544.109396/94‑1 (MQ=60)
GTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCA < SRR4302544.2826596/94‑1 (MQ=60)
TAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCAT < SRR4302544.575142/94‑1 (MQ=60)
TAATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCAT < SRR4302544.281304/94‑1 (MQ=60)
AATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATG < SRR4302544.3374074/94‑1 (MQ=60)
AATTAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATG > SRR4302544.3250956/1‑94 (MQ=60)
TAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAACATCTTCATGGTA > SRR4302544.680486/1‑94 (MQ=60)
TAACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTA > SRR4302544.680485/1‑94 (MQ=60)
AACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAA > SRR4302544.3370459/1‑94 (MQ=60)
AACTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAA > SRR4302544.2577587/1‑94 (MQ=60)
CTCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACC > SRR4302544.2895185/1‑94 (MQ=60)
TCAACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCG > SRR4302544.4202857/1‑94 (MQ=60)
AACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAGAGATTTTCCAAAAAAATCTTCATCGTAACCGTC > SRR4302544.1274331/1‑94 (MQ=60)
AACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTC > SRR4302544.1580107/1‑94 (MQ=60)
AACGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTC < SRR4302544.2315175/94‑1 (MQ=60)
CGCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCC > SRR4302544.3579645/1‑94 (MQ=60)
GCCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCT < SRR4302544.4091844/94‑1 (MQ=60)
CCGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTC < SRR4302544.1791827/94‑1 (MQ=60)
CGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCT > SRR4302544.3424598/1‑94 (MQ=60)
CGACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCT < SRR4302544.810036/94‑1 (MQ=60)
GACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTC < SRR4302544.2641802/94‑1 (MQ=60)
GACAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTC < SRR4302544.730769/94‑1 (MQ=60)
CAAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGA > SRR4302544.1398165/1‑94 (MQ=60)
AAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAA > SRR4302544.2628929/1‑94 (MQ=60)
AAGGACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAA > SRR4302544.265944/1‑94 (MQ=60)
GACTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGA > SRR4302544.2390668/1‑94 (MQ=60)
CTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCCTGGTAACCGTCCCTCTCGAAGGATG < SRR4302544.381755/94‑1 (MQ=60)
CTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATG > SRR4302544.2183823/1‑94 (MQ=60)
CTTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATG < SRR4302544.381756/94‑1 (MQ=60)
TTGCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGT > SRR4302544.4516722/1‑94 (MQ=60)
GCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGTTT < SRR4302544.2524537/94‑1 (MQ=60)
GCTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGTTT > SRR4302544.4103170/1‑94 (MQ=60)
CTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGTTTT < SRR4302544.3403835/94‑1 (MQ=60)
CTGGTTGCCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGTTTT < SRR4302544.1541537/94‑1 (MQ=60)
CCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGTTTTTCAGTAT < SRR4302544.3827916/94‑1 (MQ=60)
CCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGTTTTTCAGTAT < SRR4302544.3710030/94‑1 (MQ=60)
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CGCTATAACCCGACTCGTCGGGATACGAACCGTACCATCTTCACTGGAGAAATGGGTAATTAACTCAACGCCGACAAGGACTTGCTGGTTGTCTCTTATCGGCAGGAAATAGCAATCAGAATGATAAAGATTCTCCAAAAAAATCTTCATGGTAACCGTCCCTCTCGAAGGATGTTTTTCAGTAT > NC_000913/1789895‑1790079
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
