Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,827,618 |
A→G |
R47R (CGT→CGC) |
b1746 ← |
putative aldehyde dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,827,618 | 0 | A | G | 96.8%
| 283.4
/ ‑0.7
| 95 | R47R (CGT→CGC) | b1746 | putative aldehyde dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (2/1); new base G (47/45); total (49/46) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.11e-01 |
Only 100 of 101 total aligned reads displayed.
CGGCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCACGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTC > NC_000913/1827527‑1827705
|
cGGCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCAc < 2:3846023/93‑1 (MQ=255)
ggCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCcgcgcg < 2:3337519/93‑1 (MQ=255)
gCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCgg > 1:3126444/1‑93 (MQ=255)
gCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCgg > 2:1000885/1‑93 (MQ=255)
gCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGAGGAAACGCCGCGCgg > 1:4181021/1‑93 (MQ=255)
tttATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGc > 1:1229202/1‑93 (MQ=255)
tATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTg > 1:120739/1‑93 (MQ=255)
tATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTg < 2:817024/93‑1 (MQ=255)
ttGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGcc < 2:2928366/93‑1 (MQ=255)
tGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGccc > 1:880285/1‑93 (MQ=255)
tGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGccc > 2:135517/1‑93 (MQ=255)
tGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGccc > 2:1448229/1‑93 (MQ=255)
tGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGccc > 2:1015523/1‑93 (MQ=255)
tGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGccc > 2:4638950/1‑93 (MQ=255)
gCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCg > 1:1290325/1‑93 (MQ=255)
cTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGa > 2:262689/1‑93 (MQ=255)
tttCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGAc > 2:2338058/1‑93 (MQ=255)
tCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACaa < 2:2461266/93‑1 (MQ=255)
ccAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAg > 1:2568559/1‑93 (MQ=255)
agcagTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGcc > 1:3040799/1‑93 (MQ=255)
gcagTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCt < 1:2639230/93‑1 (MQ=255)
gcagTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCt < 2:2376891/93‑1 (MQ=255)
agTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGc > 1:102494/1‑93 (MQ=255)
agTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGc > 1:4431845/1‑93 (MQ=255)
gTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCt > 1:3967929/1‑93 (MQ=255)
gTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCt > 1:3141825/1‑93 (MQ=255)
gCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCg < 1:3577971/93‑1 (MQ=255)
gCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCg < 2:3781416/93‑1 (MQ=255)
cGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGa < 1:3331145/93‑1 (MQ=255)
gCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGAcc < 2:4042507/93‑1 (MQ=255)
cAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCt < 1:508931/93‑1 (MQ=255)
cAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCt < 1:508930/93‑1 (MQ=255)
cAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCt < 1:3819879/93‑1 (MQ=255)
aaaGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTg > 2:2744921/1‑93 (MQ=255)
aaaGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTg < 1:3560877/93‑1 (MQ=255)
aaaGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTg < 1:3560976/93‑1 (MQ=255)
aaGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGa < 2:1546801/93‑1 (MQ=255)
aaGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGa > 1:2114607/1‑93 (MQ=255)
aaGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGa < 2:786671/93‑1 (MQ=255)
aaGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGa < 1:1176366/93‑1 (MQ=255)
aaGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCCGCTCGACCTGa > 1:3874657/1‑93 (MQ=255)
gCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGc < 2:4726975/93‑1 (MQ=255)
tccacacCGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggca < 1:1716018/90‑1 (MQ=255)
tCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggca < 1:133556/93‑1 (MQ=255)
cGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggcat > 2:2023234/1‑93 (MQ=255)
cGACAACGGCATGACGTGCAGCAAATGAAAGCCGCGCCCAGCGCGGAACCGCCGCGCGGGCTGACCGACAAGCCTGGTCGACCTGAGcggcat < 2:357287/93‑1 (MQ=255)
aCAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggcatcg > 2:1366721/1‑93 (MQ=255)
cAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGCAACGCCGCGCGGGCTGCCCGACAAGACTGCTCGACCCGAGcgccctcgg > 2:1310286/1‑93 (MQ=255)
aaCGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggcatcggc < 1:2127626/93‑1 (MQ=255)
cGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggcatcggcat < 1:3023776/93‑1 (MQ=255)
cGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCACGGGCTGCCCGACAAGCCTGCTCGACCTGAGcggactcggcat > 1:4484713/1‑93 (MQ=255)
aTGACGTTCAGCAAATGAAGGCCGCGCCCGGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAtt < 2:4190111/93‑1 (MQ=255)
aTGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAtt < 2:3433225/93‑1 (MQ=255)
aTGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAtt > 1:509962/1‑93 (MQ=255)
aTGACGTTCAGCAAATGAAAGCCGAGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGACTGCTCGACCTGAGCGGCATCGGcatcatc > 1:2491858/1‑92 (MQ=255)
tGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttg > 2:1748470/1‑93 (MQ=255)
tGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttg > 2:637379/1‑93 (MQ=255)
tGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttg > 1:1946719/1‑93 (MQ=255)
gACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttgc > 2:1893403/1‑93 (MQ=255)
gTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttgcctt > 1:4114/1‑93 (MQ=255)
gTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttgcctt > 1:2498273/1‑93 (MQ=255)
gTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttgcctt > 2:2719787/1‑93 (MQ=255)
gTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttgcctt < 2:3943085/93‑1 (MQ=255)
gTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGAACTGAGCGGCATCGGCATCAttgcctt < 2:2567317/93‑1 (MQ=255)
ttCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttgccttg > 2:2738305/1‑93 (MQ=255)
ttCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCAttgccttg < 2:2336289/93‑1 (MQ=255)
aGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCa > 2:1527038/1‑93 (MQ=255)
aGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCa > 1:1240849/1‑93 (MQ=255)
gCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCAt < 1:2969334/93‑1 (MQ=255)
cAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATa < 1:4653297/93‑1 (MQ=255)
aaTGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAac > 2:4581942/1‑93 (MQ=255)
aaTGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAac > 1:4700306/1‑93 (MQ=255)
aaTGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAac < 1:1461609/93‑1 (MQ=255)
aaTGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAac < 2:4499138/93‑1 (MQ=255)
aTGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAaca > 1:1752641/1‑93 (MQ=255)
gAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACAcc < 1:32750/93‑1 (MQ=255)
aaaGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCt < 2:2483476/93‑1 (MQ=255)
gCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGc < 2:3256219/93‑1 (MQ=255)
cgcgCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGccc < 1:33496/93‑1 (MQ=255)
cgcaCCCAGCGTGCAACGCCCGCGCGGGCTGCCCGACACGCCTGCGCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGccc < 1:33495/93‑1 (MQ=255)
gcgcCCAGCGCGGAAACGCCGCGCGGTCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCg < 2:2090289/93‑1 (MQ=255)
cgcCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGa < 1:4190341/93‑1 (MQ=255)
ccccAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGAt < 2:3922184/92‑1 (MQ=255)
cccAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATa > 2:3142356/1‑93 (MQ=255)
ccAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATAc > 2:4051505/1‑93 (MQ=255)
ccAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATAc > 1:1153174/1‑93 (MQ=255)
aGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCg < 2:767601/93‑1 (MQ=255)
aGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCg > 1:2458307/1‑93 (MQ=255)
gcgcGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCgg > 1:2322870/1‑93 (MQ=255)
gcgcGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCgg > 1:1975568/1‑93 (MQ=255)
cgcgGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGa > 1:768409/1‑93 (MQ=255)
gcgcAAACGCCGCGCGGGCTCCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGAt < 1:259127/93‑1 (MQ=255)
gcgGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGAt > 2:869072/1‑93 (MQ=255)
cgGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGAtt < 2:1874183/93‑1 (MQ=255)
cgGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGAtt < 1:3244957/93‑1 (MQ=255)
aaCGCCGCACGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGc > 2:3115576/1‑93 (MQ=255)
aCGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCt < 2:1269028/93‑1 (MQ=255)
aCGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCt < 1:2252009/93‑1 (MQ=255)
gccgcGCGGGCTGCCCGCCAAGCCTGCTCGCCCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTc < 1:370968/93‑1 (MQ=255)
gccgcGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTc > 2:2001334/1‑93 (MQ=255)
|
CGGCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCACGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTC > NC_000913/1827527‑1827705
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCACGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACACG > NC_000913/1827528‑1827710
|
GGCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGG > SRR4302544.3156154/1‑94 (MQ=60)
GGCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGAGGAAACGCCGCGCGG > SRR4302544.4222429/1‑94 (MQ=60)
CTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGC > SRR4302544.1241362/1‑94 (MQ=60)
TTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTG > SRR4302544.121838/1‑94 (MQ=60)
TTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCC > SRR4302544.889013/1‑94 (MQ=60)
TGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCG > SRR4302544.1303028/1‑94 (MQ=60)
TCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAG > SRR4302544.2593236/1‑94 (MQ=60)
CAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCC > SRR4302544.3069898/1‑94 (MQ=60)
GCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTG < SRR4302544.2664529/94‑1 (MQ=60)
CAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGC > SRR4302544.103430/1‑94 (MQ=60)
CAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGC > SRR4302544.4476556/1‑94 (MQ=60)
AGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCT > SRR4302544.4007396/1‑94 (MQ=60)
AGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCT > SRR4302544.3171691/1‑94 (MQ=60)
GCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGA < SRR4302544.3612290/94‑1 (MQ=60)
CGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGAC < SRR4302544.3362866/94‑1 (MQ=60)
CAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTG < SRR4302544.3857745/94‑1 (MQ=60)
CAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTG < SRR4302544.513952/94‑1 (MQ=60)
CAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTG < SRR4302544.513951/94‑1 (MQ=60)
AAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGA < SRR4302544.3595114/94‑1 (MQ=60)
AAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGA > SRR4302544.2134927/1‑94 (MQ=60)
AAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGA < SRR4302544.3595014/94‑1 (MQ=60)
AAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCCGCTCGACCTGA > SRR4302544.3913133/1‑94 (MQ=60)
AAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAG < SRR4302544.1188092/94‑1 (MQ=60)
TCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCAT < SRR4302544.134799/94‑1 (MQ=60)
TCCACACCGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCAT < SRR4302544.1732892/94‑1 (MQ=60)
AACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCA < SRR4302544.2148022/94‑1 (MQ=60)
ACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCACGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGACTCGGCAT > SRR4302544.4529773/1‑94 (MQ=60)
CGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATC < SRR4302544.3052750/94‑1 (MQ=60)
CATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATT > SRR4302544.514994/1‑94 (MQ=60)
CATGACGTTCAGCAAATGAAAGCCGAGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGACTGCTCGACCTGAGCGGCATCGGCATCATC > SRR4302544.2515721/1‑94 (MQ=60)
ATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTG > SRR4302544.1965572/1‑94 (MQ=60)
CGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTT > SRR4302544.2522218/1‑94 (MQ=60)
CGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTT > SRR4302544.4148/1‑94 (MQ=60)
CAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCA > SRR4302544.1253102/1‑94 (MQ=60)
GCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATA < SRR4302544.2997808/94‑1 (MQ=60)
CAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAA < SRR4302544.4699347/94‑1 (MQ=60)
AAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAAC > SRR4302544.4746749/1‑94 (MQ=60)
AATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACA < SRR4302544.1476107/94‑1 (MQ=60)
AATGAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACA > SRR4302544.1769798/1‑94 (MQ=60)
GAAAGCCGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCT < SRR4302544.33069/94‑1 (MQ=60)
CGCGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCG < SRR4302544.33820/94‑1 (MQ=60)
CGCCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGAT < SRR4302544.4231846/94‑1 (MQ=60)
CCCAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATAC > SRR4302544.1164641/1‑94 (MQ=60)
CAGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCG > SRR4302544.2481758/1‑94 (MQ=60)
AGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGG > SRR4302544.2344891/1‑94 (MQ=60)
AGCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGG > SRR4302544.1994766/1‑94 (MQ=60)
GCGCGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGA > SRR4302544.775891/1‑94 (MQ=60)
GCGCAAACGCCGCGCGGGCTCCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATT < SRR4302544.261870/94‑1 (MQ=60)
CGGAAACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTA < SRR4302544.3276023/94‑1 (MQ=60)
ACGCCGCGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTT < SRR4302544.2273176/94‑1 (MQ=60)
GCCGCGCGGGCTGCCCGCCAAGCCTGCTCGCCCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCA < SRR4302544.374758/94‑1 (MQ=60)
CGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACACG < SRR4302544.2917215/94‑1 (MQ=60)
CGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACACG < SRR4302544.1996083/94‑1 (MQ=60)
CGCGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACACG < SRR4302544.739692/94‑1 (MQ=60)
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GGCTTTATTGCTTTCCAGCAGTGCGGCAAAGCGTTCGACAACGGCATGACGTTCAGCAAATGAAAGCCGCGCCCAGCGCGGAAACGCCGCACGGGCTGCCCGACAAGCCTGCTCGACCTGAGCGGCATCGGCATCATTGCCTTGCCATAACACCTCGCCCGATACCGGATTACGCTTCACACG > NC_000913/1827528‑1827710
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
