Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,904,576 |
G→A |
P170L (CCC→CTC) |
yebH ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,904,576 | 0 | G | A | 94.5%
| 463.1
/ 8.5
| 145 | P170L (CCC→CTC) | yebH | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (2/6); new base A (71/66); total (73/72) |
| Fisher's exact test for biased strand distribution p-value = 1.66e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.20e-02 |
Only 100 of 147 total aligned reads displayed.
GGTGCATGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGGGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAAC > NC_000913/1904486‑1904663
|
ggTGCATGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGc < 2:1447421/93‑1 (MQ=255)
gTGCATGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCt < 1:3665355/93‑1 (MQ=255)
gTGCATGAAAATGGACTTCATTGTAAATCAGCCCCTTCAGCTCCAGCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCt < 1:3665356/93‑1 (MQ=255)
aTGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCac < 1:4520258/93‑1 (MQ=255)
aTGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCac > 2:2295575/1‑93 (MQ=255)
aTGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCac > 1:1177639/1‑93 (MQ=255)
aTGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGCTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCac < 2:1894627/93‑1 (MQ=255)
gAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCacta < 1:3508603/93‑1 (MQ=255)
gAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCacta > 2:2922903/1‑93 (MQ=255)
aaGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCactac > 2:1170349/1‑93 (MQ=255)
aGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCactact > 2:1329181/1‑93 (MQ=255)
aGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCactact > 2:1907060/1‑93 (MQ=255)
aTGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCg > 2:3983144/1‑93 (MQ=255)
tGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGGGCGTCACTACTCGt < 2:2748860/93‑1 (MQ=255)
tGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGt > 2:3567823/1‑93 (MQ=255)
ttCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTaa > 1:3051874/1‑93 (MQ=255)
tCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAAt > 1:2526199/1‑93 (MQ=255)
tCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAAt > 2:931511/1‑93 (MQ=255)
aTTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAAttt > 2:1060427/1‑92 (MQ=255)
aTTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAAttc > 2:1060428/1‑93 (MQ=255)
aTTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAAttc > 2:1023220/1‑93 (MQ=255)
tGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAAttctt < 1:4712277/93‑1 (MQ=255)
gTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAAttcttc < 1:3937580/93‑1 (MQ=255)
tAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATtcttct < 1:1603381/93‑1 (MQ=255)
tCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCtt < 2:2463084/93‑1 (MQ=255)
cAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGGGCTTCACTACTCGTGCTAATTCTTCTGCttt < 2:4145185/93‑1 (MQ=255)
aGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCtttc > 2:1218183/1‑92 (MQ=255)
aGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTa < 2:2658838/93‑1 (MQ=255)
gCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTac < 2:2796872/93‑1 (MQ=255)
ccccTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTata > 1:3513136/1‑91 (MQ=255)
ccccTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTaca < 2:533937/93‑1 (MQ=255)
ccccTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGATAATTCTTCTGCTTTaca < 1:3052285/93‑1 (MQ=255)
cccTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTacac > 2:4615782/1‑93 (MQ=255)
cccTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTacac > 2:4700618/1‑93 (MQ=255)
cccTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTacac < 1:3755167/93‑1 (MQ=255)
cccTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTacac > 1:1093172/1‑93 (MQ=255)
cccTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTacac < 2:3102988/93‑1 (MQ=255)
cccTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTacac < 1:125/93‑1 (MQ=255)
cTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACgg > 1:2918413/1‑93 (MQ=255)
cTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACgg > 2:4254674/1‑93 (MQ=255)
ttCAGCTCCATCAAATGTCGCGGTCCCGGCGTGTCAGTAACGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGgc < 1:3208404/93‑1 (MQ=255)
ttCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGgc > 2:4434491/1‑93 (MQ=255)
ttCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGgc > 2:1744645/1‑93 (MQ=255)
ttCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGgc < 1:1102514/93‑1 (MQ=255)
tCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGgcg > 2:3173967/1‑93 (MQ=255)
cAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGgcgc < 1:2577046/93‑1 (MQ=255)
cgCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGcgcg < 1:174884/92‑1 (MQ=255)
aGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGcgcg > 1:2288351/1‑93 (MQ=255)
aGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGcgcg > 2:636534/1‑93 (MQ=255)
aGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGcgcg > 2:2968362/1‑93 (MQ=255)
gCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGt > 2:229619/1‑93 (MQ=255)
gCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTCCTTTACACGGCGCGt > 1:2558610/1‑93 (MQ=255)
tCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTAGACGGCGCGTaa < 2:2749428/93‑1 (MQ=255)
tCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTaa > 1:1966613/1‑93 (MQ=255)
cATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGCGCTAATTCTTCTGCTTTACACGGCGCGTAAAt < 2:3440495/93‑1 (MQ=255)
aTCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGGGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATa < 1:3393018/93‑1 (MQ=255)
aTCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGACCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATa > 2:1172092/1‑93 (MQ=255)
tCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATAc > 1:4292133/1‑93 (MQ=255)
cAAATGTCGCGGTGCCGGCGTGTGAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACg < 2:1648132/93‑1 (MQ=255)
aaaTGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGt > 1:4105997/1‑93 (MQ=255)
aaTGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGta > 1:3570025/1‑93 (MQ=255)
aTGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGtat < 1:1215138/93‑1 (MQ=255)
tGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGtatt > 2:4273657/1‑93 (MQ=255)
gTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGtatta < 2:209417/93‑1 (MQ=255)
gcgcgGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTTCTCGTGCTAATTCTTCTGCTTTACACGGCTCGTAAATACGtattat < 1:2872862/92‑1 (MQ=255)
gcgGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATgg < 1:3565886/93‑1 (MQ=255)
cgGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGc > 1:311466/1‑93 (MQ=255)
ccGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCa > 2:854707/1‑93 (MQ=255)
cGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCAt > 1:3733034/1‑93 (MQ=255)
ggCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATa < 2:2831059/93‑1 (MQ=255)
ggCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATa > 1:1314003/1‑93 (MQ=255)
gCGTGGCAGTAATGACCCAGCCGCCGGGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATAc < 2:84552/93‑1 (MQ=255)
gCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATAc < 1:4517864/93‑1 (MQ=255)
gTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTg > 2:2138787/1‑93 (MQ=255)
ggCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGt > 1:4307627/1‑93 (MQ=255)
ggCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCGTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGt < 2:1291842/93‑1 (MQ=255)
aGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATc < 2:3717512/93‑1 (MQ=255)
gTAATGCCCCAGACGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGAAGTCCGTTCTAGTTTCg < 2:4227062/93‑1 (MQ=255)
gTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCg < 1:2145564/93‑1 (MQ=255)
gTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCg < 2:3747076/93‑1 (MQ=255)
gTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCg > 2:1465251/1‑93 (MQ=255)
tAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCgg < 2:4124460/93‑1 (MQ=255)
aaTGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGa > 1:3396246/1‑93 (MQ=255)
aTGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGaa > 1:1849268/1‑93 (MQ=255)
aTGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGaa > 1:3639070/1‑93 (MQ=255)
gACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGaaaa < 2:4514086/93‑1 (MQ=255)
gcccAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAAc < 1:2110079/92‑1 (MQ=255)
ccccAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAAc < 1:1732542/92‑1 (MQ=255)
aCCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAAc > 2:3515159/1‑93 (MQ=255)
cccAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCTTACTGGTATCGGAAAACg > 1:3011864/1‑93 (MQ=255)
cccAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACg < 2:1513834/93‑1 (MQ=255)
ccAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACgg < 2:3875100/93‑1 (MQ=255)
cAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGc > 2:964745/1‑93 (MQ=255)
cAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGc < 1:2202411/93‑1 (MQ=255)
aGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCa > 2:1733695/1‑93 (MQ=255)
gccgccGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCaa > 1:2875324/1‑93 (MQ=255)
gccgccGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCaa > 2:2700850/1‑93 (MQ=255)
ccgccgAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCaaa < 2:4524053/93‑1 (MQ=255)
ccgccgAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCaaa < 2:4025033/93‑1 (MQ=255)
cgccgAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAAc < 2:4174020/93‑1 (MQ=255)
|
GGTGCATGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGGGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAAC > NC_000913/1904486‑1904663
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGGTGCATGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGGGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTGGC > NC_000913/1904484‑1904669
|
GAGGTGCATGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAG > SRR4302544.2784528/1‑94 (MQ=60)
GTGCATGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTT < SRR4302544.3701908/94‑1 (MQ=60)
GTGCATGAAAATGGACTTCATTGTAAATCAGCCCCTTCAGCTCCAGCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTT < SRR4302544.3701909/94‑1 (MQ=60)
TACATGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTC < SRR4302544.2937974/94‑1 (MQ=60)
CATGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCAC > SRR4302544.1189376/1‑94 (MQ=60)
ATGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACT < SRR4302544.4565514/94‑1 (MQ=60)
ATGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACT < SRR4302544.1850033/94‑1 (MQ=60)
GAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTAC > SRR4302544.3597560/1‑94 (MQ=60)
GAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTAC < SRR4302544.3542076/94‑1 (MQ=60)
AAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACT > SRR4302544.128423/1‑94 (MQ=60)
TACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCT < SRR4302544.3817341/94‑1 (MQ=60)
ACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTA < SRR4302544.4422777/94‑1 (MQ=60)
CTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAA > SRR4302544.3081029/1‑94 (MQ=60)
TTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAAT > SRR4302544.2550476/1‑94 (MQ=60)
TGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTC < SRR4302544.4758829/94‑1 (MQ=60)
GTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCT < SRR4302544.3976690/94‑1 (MQ=60)
TAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTG < SRR4302544.1619187/94‑1 (MQ=60)
TAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTG < SRR4302544.2656540/94‑1 (MQ=60)
AAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGT > SRR4302544.306321/1‑94 (MQ=60)
AATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCT < SRR4302544.342078/94‑1 (MQ=60)
GCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTATA > SRR4302544.3546657/1‑94 (MQ=60)
CCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACAC > SRR4302544.1104048/1‑94 (MQ=60)
CCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGATAATTCTTCTGCTTTACAC < SRR4302544.3081441/94‑1 (MQ=60)
CCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACG < SRR4302544.3792446/94‑1 (MQ=60)
CCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACG < SRR4302544.129/94‑1 (MQ=60)
CCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGG > SRR4302544.2946473/1‑94 (MQ=60)
CTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGC > SRR4302544.3724283/1‑94 (MQ=60)
TTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGTCAGTAACGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCG < SRR4302544.3239004/94‑1 (MQ=60)
TTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCG < SRR4302544.1113495/94‑1 (MQ=60)
CAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCG > SRR4302544.2309924/1‑94 (MQ=60)
CAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCG < SRR4302544.2601800/94‑1 (MQ=60)
CAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCG < SRR4302544.4264021/94‑1 (MQ=60)
CGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGT < SRR4302544.176608/94‑1 (MQ=60)
AGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTCCTTTACACGGCGCGT > SRR4302544.2583182/1‑94 (MQ=60)
CTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAA > SRR4302544.468882/1‑94 (MQ=60)
CTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAA > SRR4302544.1985714/1‑94 (MQ=60)
ATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGGGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATAC < SRR4302544.3425456/94‑1 (MQ=60)
ATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATAC < SRR4302544.2181499/94‑1 (MQ=60)
ATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATAC > SRR4302544.4335963/1‑94 (MQ=60)
CAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTNNNNTACACGGCGCNTNAATANGN > SRR4302544.1396166/1‑94 (MQ=60)
CAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGT > SRR4302544.4146828/1‑94 (MQ=60)
CAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGA > SRR4302544.2407032/1‑94 (MQ=60)
AAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTA > SRR4302544.3604259/1‑94 (MQ=60)
ATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATT < SRR4302544.1227164/94‑1 (MQ=60)
ATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATT < SRR4302544.3109815/94‑1 (MQ=60)
GTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGGGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTAT < SRR4302544.2063825/94‑1 (MQ=60)
GCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTTCTCGTGCTAATTCTTCTGCTTTACACGGCTCGTAAATACGTATTATG < SRR4302544.2900591/94‑1 (MQ=60)
CGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGG < SRR4302544.3608977/94‑1 (MQ=60)
GCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGC < SRR4302544.3600074/94‑1 (MQ=60)
GCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGC > SRR4302544.314704/1‑94 (MQ=60)
CCGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCAT > SRR4302544.3770150/1‑94 (MQ=60)
CGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATA > SRR4302544.1204208/1‑94 (MQ=60)
CGGCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATA > SRR4302544.1326921/1‑94 (MQ=60)
GCGTGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACT < SRR4302544.4563107/94‑1 (MQ=60)
TGGCAGTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGT > SRR4302544.4351545/1‑94 (MQ=60)
GTAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGG < SRR4302544.2166015/94‑1 (MQ=60)
TAATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGA > SRR4302544.3428725/1‑94 (MQ=60)
AATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAA > SRR4302544.1867166/1‑94 (MQ=60)
AATGACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAA > SRR4302544.3675377/1‑94 (MQ=60)
GCCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACG < SRR4302544.2130371/94‑1 (MQ=60)
GCCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACG < SRR4302544.1654229/94‑1 (MQ=60)
CCCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACG < SRR4302544.1749529/94‑1 (MQ=60)
ACCCAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCTTACTGGTATCGGAAAACG > SRR4302544.3040729/1‑94 (MQ=60)
CAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCA < SRR4302544.2223160/94‑1 (MQ=60)
CAGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCA > SRR4302544.349300/1‑94 (MQ=60)
AGCCGCCGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAA > SRR4302544.2903077/1‑94 (MQ=60)
CGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCTGTACTGGTATCGGAAAACGGGAAAGGGTG > SRR4302544.2787627/1‑94 (MQ=60)
CGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG > SRR4302544.4324008/1‑94 (MQ=60)
CGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG < SRR4302544.1398089/94‑1 (MQ=60)
CGAGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTG > SRR4302544.4660573/1‑94 (MQ=60)
AGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTGGC > SRR4302544.4005851/1‑94 (MQ=60)
AGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTGGC > SRR4302544.4733501/1‑94 (MQ=60)
AGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGCATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTGGC > SRR4302544.4617827/1‑94 (MQ=60)
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GAGGTGCATGAAGATGTACTTCATTGTAAATCAGCCCCTTCAGCTCCATCAAATGTCGCGGTCCCGGCGTGGCAGTAATGACCCAGCCGCCGGGCTTCACTACTCGTGCTAATTCTTCTGCTTTACACGGCGCGTAAATACGTATTATGGCGTCCATACTGGTATCGGAAAACGGCAAACGGTGGC > NC_000913/1904484‑1904669
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
