Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,025,930 |
G→A |
S42F (TCC→TTC) |
b1956 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,025,930 | 0 | G | A | 96.0%
| 423.3
/ 2.1
| 124 | S42F (TCC→TTC) | b1956 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (2/3); new base A (58/61); total (60/64) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.07e-01 |
Only 100 of 129 total aligned reads displayed.
GAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGGAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGTTTTCC > NC_000913/2025839‑2026019
|
gAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGGa < 2:3108074/93‑1 (MQ=255)
aGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGaaa > 2:4339448/1‑93 (MQ=255)
gcgcGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGaaaa > 2:2224674/1‑93 (MQ=255)
gcgcGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGaaaa > 1:2752161/1‑93 (MQ=255)
gcgcGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGaaaa < 2:1377684/93‑1 (MQ=255)
cgcgTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAaaaa < 1:2872081/93‑1 (MQ=255)
gTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGGAAAAAAg < 1:3247685/93‑1 (MQ=255)
gTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAg > 2:3187912/1‑93 (MQ=255)
ttGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGc > 2:441521/1‑93 (MQ=255)
tGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCa < 2:378032/93‑1 (MQ=255)
tGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCa > 1:1693464/1‑93 (MQ=255)
tGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCa > 1:266637/1‑93 (MQ=255)
gCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAAt < 1:1491794/93‑1 (MQ=255)
cAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATa < 2:3680147/93‑1 (MQ=255)
cAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATa < 1:510987/93‑1 (MQ=255)
cAACGTTGTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATa < 1:130797/93‑1 (MQ=255)
aaCGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGCGAGCAAGGTGAAAAAAAGCAATAc > 1:3265796/1‑93 (MQ=255)
aCGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATAcc < 1:2700816/93‑1 (MQ=255)
gTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCAc > 2:4077860/1‑93 (MQ=255)
ttttCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACg > 1:550444/1‑93 (MQ=255)
tttCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGa < 2:2462406/93‑1 (MQ=255)
tttCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGa > 2:1422045/1‑93 (MQ=255)
tttCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGa < 2:375198/93‑1 (MQ=255)
cAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATaaa < 1:4072125/93‑1 (MQ=255)
cAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATaaa < 1:2179950/93‑1 (MQ=255)
gatgatTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGc > 1:248377/1‑93 (MQ=255)
gatgatTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGc < 2:408919/93‑1 (MQ=255)
atgatTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCa < 2:451345/93‑1 (MQ=255)
tgatTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCag > 1:462031/1‑93 (MQ=255)
tgatTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCag > 2:501168/1‑93 (MQ=255)
gatTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCaga > 1:4534981/1‑93 (MQ=255)
ttACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAgaga < 1:2408933/93‑1 (MQ=255)
ttACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGAagagt > 1:825017/1‑92 (MQ=255)
tACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGAt < 1:2667808/93‑1 (MQ=255)
aCGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGAtt < 1:1625087/93‑1 (MQ=255)
aCGCTGGCTGGAGATATAGGCATCTACCAGCACCACCACTACACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGAtt < 2:2598484/93‑1 (MQ=255)
gctggctgGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTaa < 1:780984/93‑1 (MQ=255)
gctggctgGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTaa > 2:2292128/1‑93 (MQ=255)
gctggctgGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTaa < 2:330014/93‑1 (MQ=255)
tggctggAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACg > 2:1281030/1‑93 (MQ=255)
ggctggAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGGAAAAAAGCAATACCACGATAAAGCAGAGATTAACGa > 1:2331319/1‑93 (MQ=255)
ggctggAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGa < 1:4255370/93‑1 (MQ=255)
ctggAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACa > 2:1493970/1‑93 (MQ=255)
tggAGATATAGGAATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACAt < 1:1161790/93‑1 (MQ=255)
gagaTATAGGCATCTTCCAGCACCACCACTTCGCGCCAGGTGAGCAAGGTGAAAACAAGCAATACCACGATCAAGAGGAGGTTAACGACATGa > 1:3503264/1‑93 (MQ=255)
gagaTATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATgc > 1:3503263/1‑92 (MQ=255)
agaTATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGAc > 1:3810970/1‑93 (MQ=255)
gaTATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGAcc > 2:2035108/1‑93 (MQ=255)
gaTATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGAcc < 2:2672602/93‑1 (MQ=255)
gaTATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGAcc > 1:1116279/1‑93 (MQ=255)
tataGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAg < 1:457773/93‑1 (MQ=255)
tataGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAg > 1:103488/1‑93 (MQ=255)
tataGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAg < 2:2029995/93‑1 (MQ=255)
tataGGCATCATCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAg < 2:2679864/93‑1 (MQ=255)
ataGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAgg > 1:4624128/1‑93 (MQ=255)
ataGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAgg < 2:735153/93‑1 (MQ=255)
gCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGcccc < 1:2006781/93‑1 (MQ=255)
cATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCa > 1:4462362/1‑93 (MQ=255)
cATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCa < 1:1626487/93‑1 (MQ=255)
cATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCa < 2:1601466/93‑1 (MQ=255)
aTCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAg < 2:219334/93‑1 (MQ=255)
aTCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAg > 2:797474/1‑93 (MQ=255)
tCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAgg < 2:2257475/93‑1 (MQ=255)
tCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAgg > 1:1476681/1‑93 (MQ=255)
cTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAggc < 1:3620971/93‑1 (MQ=255)
cTTCCAGCACCACCACTGCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAggc < 2:166895/93‑1 (MQ=255)
ttCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAggcg > 2:3055662/1‑93 (MQ=255)
tCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAggcgg < 2:3585341/93‑1 (MQ=255)
cAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGgcggcg > 2:444587/1‑93 (MQ=255)
caccaccacTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGc < 1:3304649/93‑1 (MQ=255)
aaccacTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCTGAGATTAACGACATGACAAGGCCCCAGGCGGCGTGCGAg > 1:313219/2‑93 (MQ=255)
accacTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCATGCGGCGTGCGAGt > 2:3092579/1‑93 (MQ=255)
accacTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGt > 2:288233/1‑93 (MQ=255)
cacTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGttt > 1:4115626/1‑93 (MQ=255)
cacTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGttt < 1:776945/93‑1 (MQ=255)
acTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGtttt > 2:3637219/1‑93 (MQ=255)
acTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGtttt > 1:3857200/1‑93 (MQ=255)
acTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGtttt < 1:346209/93‑1 (MQ=255)
cTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGttttt > 1:963119/1‑93 (MQ=255)
cTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGttttt < 2:4413586/93‑1 (MQ=255)
cTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGttttt > 2:123125/1‑93 (MQ=255)
cGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAAc < 2:4681120/93‑1 (MQ=255)
ccAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCa > 1:4306029/1‑93 (MQ=255)
ccAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCa < 2:1026780/93‑1 (MQ=255)
aGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGc < 2:391759/93‑1 (MQ=255)
ggTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGct > 1:3872789/1‑93 (MQ=255)
ggTGAGCAAGGTGAAAAAAAGCAAAACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGct < 2:3376635/93‑1 (MQ=255)
gTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGctc < 2:3934862/93‑1 (MQ=255)
gTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGctc > 1:489389/1‑93 (MQ=255)
tGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGctct < 1:2877142/93‑1 (MQ=255)
tGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGctct > 2:779013/1‑93 (MQ=255)
gAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTg < 2:4443086/93‑1 (MQ=255)
gCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGt > 1:4077359/1‑93 (MQ=255)
gCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGt < 1:926096/93‑1 (MQ=255)
gCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGt < 2:1009718/93‑1 (MQ=255)
gCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGt > 2:2380721/1‑93 (MQ=255)
cAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGtt < 1:1441806/93‑1 (MQ=255)
cAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGtt > 2:3280056/1‑93 (MQ=255)
aaGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGttt > 2:1884309/1‑93 (MQ=255)
gTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGTTTTcc > 2:2057618/1‑93 (MQ=255)
|
GAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGGAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGTTTTCC > NC_000913/2025839‑2026019
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCGAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGGAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGTTTTCC > NC_000913/2025837‑2026019
|
TCGAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGA < SRR4302544.3206830/94‑1 (MQ=60)
CGAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAA > SRR4302544.1099576/1‑94 (MQ=60)
AGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAA > SRR4302544.2778662/1‑94 (MQ=60)
CGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAA < SRR4302544.2899802/94‑1 (MQ=60)
CGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGTCATCTTCCATCACCACCACTTCCCGCCAGGTGAGCAAGGTGAAAAAAAG > SRR4302544.1451269/1‑94 (MQ=60)
GTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGGAAAAAAGC < SRR4302544.3278770/94‑1 (MQ=60)
TTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCA > SRR4302544.1710174/1‑94 (MQ=60)
TTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCA > SRR4302544.269451/1‑94 (MQ=60)
GCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATA < SRR4302544.1506546/94‑1 (MQ=60)
CAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATAC < SRR4302544.516028/94‑1 (MQ=60)
CAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGCGAGCAAGGTGAAAAAAAGCAATAC > SRR4302544.3296972/1‑94 (MQ=60)
CAACGTTGTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATAC < SRR4302544.131999/94‑1 (MQ=60)
ACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCA < SRR4302544.2726781/94‑1 (MQ=60)
GTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACG > SRR4302544.555837/1‑94 (MQ=60)
TTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGAT > SRR4302544.3466344/1‑94 (MQ=60)
CAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAG < SRR4302544.2200591/94‑1 (MQ=60)
CAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAG < SRR4302544.4112649/94‑1 (MQ=60)
CAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAC > SRR4302544.310578/1‑94 (MQ=60)
AGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGC > SRR4302544.250981/1‑94 (MQ=60)
ATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAG > SRR4302544.466570/1‑94 (MQ=60)
ATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAG < SRR4302544.1537334/94‑1 (MQ=60)
TGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGA > SRR4302544.4580330/1‑94 (MQ=60)
ATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGAAGAGT > SRR4302544.833102/1‑94 (MQ=60)
TTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGAT < SRR4302544.2431819/94‑1 (MQ=60)
TTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGAT < SRR4302544.4702454/94‑1 (MQ=60)
TACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATT < SRR4302544.2693382/94‑1 (MQ=60)
ACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTA < SRR4302544.1641099/94‑1 (MQ=60)
GCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAAC < SRR4302544.788556/94‑1 (MQ=60)
GTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACG < SRR4302544.2442240/94‑1 (MQ=60)
TGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGGAAAAAAGCAATACCACGATAAAGCAGAGATTAACGA > SRR4302544.2353426/1‑94 (MQ=60)
GGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGAC < SRR4302544.4298751/94‑1 (MQ=60)
GGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGAC < SRR4302544.4168774/94‑1 (MQ=60)
CTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACAT < SRR4302544.582622/94‑1 (MQ=60)
TGGAGATATAGGAATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATG < SRR4302544.1173366/94‑1 (MQ=60)
GGAGATATAGGCATCTTCCAGCACCACCACTTCGCGCCAGGTGAGCAAGGTGAAAACAAGCAATACCACGATCAAGAGGAGGTTAACGACATGA > SRR4302544.3536683/1‑94 (MQ=60)
GGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGC > SRR4302544.3536682/1‑94 (MQ=60)
GAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGAC > SRR4302544.3848737/1‑94 (MQ=60)
AGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACC > SRR4302544.1127422/1‑94 (MQ=60)
GATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCA > SRR4302544.3568605/1‑94 (MQ=60)
ATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAG > SRR4302544.104439/1‑94 (MQ=60)
TATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGG > SRR4302544.4669997/1‑94 (MQ=60)
TATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGG < SRR4302544.462280/94‑1 (MQ=60)
GCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCA > SRR4302544.4507273/1‑94 (MQ=60)
GCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCA < SRR4302544.2026279/94‑1 (MQ=60)
CATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGGAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAG < SRR4302544.4076276/94‑1 (MQ=60)
CATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAG < SRR4302544.1642511/94‑1 (MQ=60)
ATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGG > SRR4302544.1491288/1‑94 (MQ=60)
CTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCG < SRR4302544.3657048/94‑1 (MQ=60)
CACCACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCG < SRR4302544.3336128/94‑1 (MQ=60)
CAACCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCTGAGATTAACGACATGACAAGGCCCCAGGCGGCGTGCGAG > SRR4302544.316471/1‑94 (MQ=60)
CCACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTT > SRR4302544.4156508/1‑94 (MQ=60)
CACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTT > SRR4302544.3895490/1‑94 (MQ=60)
CACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTT < SRR4302544.784483/94‑1 (MQ=60)
ACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTT < SRR4302544.349771/94‑1 (MQ=60)
ACTTCACGCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTT > SRR4302544.972577/1‑94 (MQ=60)
GCCAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCA > SRR4302544.4349937/1‑94 (MQ=60)
CAGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGC > SRR4302544.2073982/1‑94 (MQ=60)
AGGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCT > SRR4302544.3911250/1‑94 (MQ=60)
GGTGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTC > SRR4302544.494190/1‑94 (MQ=60)
TGAGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTG < SRR4302544.2904912/94‑1 (MQ=60)
AGCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGT > SRR4302544.4117935/1‑94 (MQ=60)
GCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGTT < SRR4302544.935220/94‑1 (MQ=60)
GCAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGTT < SRR4302544.935221/94‑1 (MQ=60)
CAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGTTT < SRR4302544.1456150/94‑1 (MQ=60)
CAAGGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGTTT > SRR4302544.2761330/1‑94 (MQ=60)
GGTGAAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGTTTTCC < SRR4302544.4534192/94‑1 (MQ=60)
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TCGAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGGTGGAAAAAAGCAATACCACGATAAAGCAGAGATTAACGACATGACCAGGCCCCAGGCGGCGTGCGAGTTTTTTCAACCAGCTCTGGTTTTCC > NC_000913/2025837‑2026019
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
