Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,026,680 |
T→C |
T237A (ACG→GCG) |
yedI ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,026,680 | 0 | T | C | 93.5%
| 343.3
/ 8.9
| 123 | T237A (ACG→GCG) | yedI | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (2/6); new base C (39/76); total (41/82) |
| Fisher's exact test for biased strand distribution p-value = 7.18e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 130 total aligned reads displayed.
TTTGCTGCCCGGCGAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGTGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGATTTTTC > NC_000913/2026590‑2026767
|
tttGCTGCCCGGCGAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAgcgcgc > 2:4045544/1‑93 (MQ=255)
ttGCTGCCCGGCGAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGcc < 2:1193440/93‑1 (MQ=255)
ctgcCCGGCGAAATGTTCAATGGCGTGCTGCAGCGGCGCCATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGaa > 2:1422955/1‑92 (MQ=255)
gcCCGGCGAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACaa > 1:4509532/1‑93 (MQ=255)
cGGCGAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCg < 2:1786905/93‑1 (MQ=255)
cGAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATa < 2:3781813/93‑1 (MQ=255)
gAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATaa > 2:3207275/1‑93 (MQ=255)
gAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATaa < 1:3668363/93‑1 (MQ=255)
gAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATaa < 2:1662552/93‑1 (MQ=255)
gAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATaa < 1:2253313/93‑1 (MQ=255)
aaaTGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAAc < 2:311115/93‑1 (MQ=255)
aaTGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGCTAACg > 1:178902/1‑93 (MQ=255)
aaTGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACg > 1:2629902/1‑93 (MQ=255)
aTGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCGCCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGc < 1:522926/93‑1 (MQ=255)
aTGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGc > 2:3507311/1‑93 (MQ=255)
aTGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGc < 2:2051153/93‑1 (MQ=255)
tGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCt < 1:1432357/93‑1 (MQ=255)
tGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCt > 2:2054217/1‑93 (MQ=255)
tCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTtc > 1:1656848/1‑93 (MQ=255)
tCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTtc < 2:296818/93‑1 (MQ=255)
tCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTtc > 1:2932900/1‑93 (MQ=255)
cAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTtca < 2:1398760/93‑1 (MQ=255)
agtGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTtcat < 2:691807/91‑1 (MQ=255)
aaTGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTtcat > 1:2808851/1‑93 (MQ=255)
aTGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTtcatc > 1:1431147/1‑93 (MQ=255)
aTGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTtcatc < 1:2144342/93‑1 (MQ=255)
aTGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTtcatc > 2:4332253/1‑93 (MQ=255)
tGGCGTGATGCAGCGGCGCACTTCCATGCACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGTCACTAAATAACGCTTtaatca > 2:2538290/1‑93 (MQ=255)
tGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTtcatca < 1:2552001/93‑1 (MQ=255)
tGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTtcatca > 1:4382871/1‑93 (MQ=255)
gCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGc < 1:373652/93‑1 (MQ=255)
cGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGcg < 1:3561574/93‑2 (MQ=255)
gTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCa < 1:762679/93‑1 (MQ=255)
gTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCa > 1:4189262/1‑93 (MQ=255)
tGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGTGCCGACAATCGATAACGCTTTCATCAGCCAg < 2:4266374/93‑1 (MQ=255)
tGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAg < 2:2540587/93‑1 (MQ=255)
gATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAgg < 1:2120765/93‑1 (MQ=255)
tGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGgc < 2:3356174/93‑1 (MQ=255)
gCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGTGCCGACAATCGATAACGCTTTCATCAGCCAGGgcg < 2:554459/93‑1 (MQ=255)
gCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGgcg < 1:403645/93‑1 (MQ=255)
aGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGcgcg > 2:936151/1‑93 (MQ=255)
gggcgCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGAt < 1:4463545/92‑1 (MQ=255)
cggcgCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGAt < 2:1757409/93‑1 (MQ=255)
gcgcAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATaa < 2:431118/93‑1 (MQ=255)
cgcAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAAt < 2:3785815/93‑1 (MQ=255)
gcAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATc < 1:1318799/93‑1 (MQ=255)
gcAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATc < 2:3119450/93‑1 (MQ=255)
aaTTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCaa > 2:1133483/1‑93 (MQ=255)
aaTTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCaa < 1:4427882/93‑1 (MQ=255)
aaTTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCaa > 1:3983834/1‑93 (MQ=255)
aTTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAAt > 1:1521585/1‑93 (MQ=255)
aTTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAAt < 1:2630026/93‑1 (MQ=255)
aTTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAAt > 2:2736771/1‑93 (MQ=255)
ttCGATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATa < 2:258039/93‑1 (MQ=255)
tCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCCATAACGCTTTCATCAGCCAGAGCGCGATAAACAATaa > 2:2193668/1‑93 (MQ=255)
ccATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAAc < 1:3051816/93‑1 (MQ=255)
ccATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAAc < 1:241688/93‑1 (MQ=255)
cATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAAcc < 2:572434/93‑1 (MQ=255)
aTGTCCCCCAATCCCCCCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAAccc < 2:919592/93‑1 (MQ=255)
aTGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAAccc < 2:919740/93‑1 (MQ=255)
aTGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAAccc > 2:2693199/1‑93 (MQ=255)
cacaATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTAcc < 2:3770682/93‑1 (MQ=255)
ccaATCCCACCGCCGACGAGGAACATCGCCAGCGTGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCt < 2:4104534/92‑1 (MQ=255)
acaATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCt > 2:2434174/1‑93 (MQ=255)
acaATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCt < 1:1327972/93‑1 (MQ=255)
acaATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCt < 1:2271971/93‑1 (MQ=255)
caATCCCACCGCCGACGAGGAACATCGCCAGCGTGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTa < 1:2453489/93‑1 (MQ=255)
caATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTa < 2:1560322/93‑1 (MQ=255)
aaTCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTaa < 2:2679302/93‑1 (MQ=255)
aaTCCAACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTaa < 1:4345755/93‑1 (MQ=255)
aTCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAAt > 2:215663/1‑93 (MQ=255)
aTCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAAt < 2:3600472/93‑1 (MQ=255)
aTCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAAt < 1:3515295/93‑1 (MQ=255)
cccccgccgACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGcc < 1:2424838/90‑1 (MQ=255)
ccACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGcc < 2:3715878/93‑1 (MQ=255)
ccACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGcc > 1:1641062/1‑93 (MQ=255)
ccACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGcc < 1:4067242/93‑1 (MQ=255)
ccACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGcc > 2:1978433/1‑93 (MQ=255)
cccgccgACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTg < 1:4099464/92‑1 (MQ=255)
gccgACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCAt < 2:250325/93‑1 (MQ=255)
cgacgaGGAACATCGCCAGCGTGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCa > 2:2046383/1‑93 (MQ=255)
cgacgaGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCa > 2:2485828/1‑93 (MQ=255)
gacgaGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAg > 1:4693426/1‑93 (MQ=255)
aacgaGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAg < 2:2264431/92‑1 (MQ=255)
acgaGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAgc < 2:3053259/93‑1 (MQ=255)
gaGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAgcgc > 2:839119/1‑93 (MQ=255)
aaCATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTg < 2:4043265/93‑1 (MQ=255)
aCATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTgg < 1:1538464/93‑1 (MQ=255)
cATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATATCCCTTTACCTAATGCCTGCATCAGCGCGCTGGa < 2:2150989/93‑1 (MQ=255)
cATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGa < 1:2913806/93‑1 (MQ=255)
aTCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTCCCTAATGCCTGCATCAGCGCGCTGGAt > 2:593018/1‑93 (MQ=255)
aTCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGAt > 2:593019/1‑93 (MQ=255)
aTCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGAt < 2:3205648/93‑1 (MQ=255)
aTCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGAt > 2:694228/1‑93 (MQ=255)
aTCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGAt > 1:3645841/1‑93 (MQ=255)
gCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGAtttt > 1:3600439/1‑93 (MQ=255)
gCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGAtttt < 2:1162075/93‑1 (MQ=255)
gCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGAtttt < 1:4662692/93‑1 (MQ=255)
cAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGATTTTTc < 1:1546956/93‑1 (MQ=255)
cAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGATTTTTc < 2:3651567/93‑1 (MQ=255)
|
TTTGCTGCCCGGCGAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGTGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGATTTTTC > NC_000913/2026590‑2026767
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTTTGCTGCCCGGCGAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGTGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGATTTTTCCGCCAG > NC_000913/2026589‑2026773
|
CTTTGCTGCCCGGCGAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGC < SRR4302544.3885211/94‑1 (MQ=60)
TGCTGCCCGGCGAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGA > SRR4302544.822544/1‑94 (MQ=60)
TGCCCGGCGAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAA > SRR4302544.4554738/1‑94 (MQ=60)
GCGAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATA < SRR4302544.3141085/94‑1 (MQ=60)
GAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAAC < SRR4302544.3704945/94‑1 (MQ=60)
GAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAAC < SRR4302544.2274501/94‑1 (MQ=60)
AAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGCTAACG > SRR4302544.180671/1‑94 (MQ=60)
AAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACG > SRR4302544.2655116/1‑94 (MQ=60)
ATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCGCCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCT < SRR4302544.528099/94‑1 (MQ=60)
agatcagTGGCGTGATGCAGGGGCGCAATCCCATGTGCCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTT < SRR4302544.4585039/87‑1 (MQ=60)
TGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTT < SRR4302544.1446611/94‑1 (MQ=60)
GTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTT < SRR4302544.1477198/94‑1 (MQ=60)
TTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTC < SRR4302544.1996220/94‑1 (MQ=60)
TTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTC > SRR4302544.1673178/1‑94 (MQ=60)
TTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTC > SRR4302544.2961083/1‑94 (MQ=60)
CAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCAT > SRR4302544.2835950/1‑94 (MQ=60)
AATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATC > SRR4302544.1445387/1‑94 (MQ=60)
ATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCA < SRR4302544.2164790/94‑1 (MQ=60)
ATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCA > SRR4302544.4427261/1‑94 (MQ=60)
TGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAG < SRR4302544.2576498/94‑1 (MQ=60)
GCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCC < SRR4302544.377471/94‑1 (MQ=60)
CGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCGA < SRR4302544.3595716/94‑1 (MQ=60)
CGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCA > SRR4302544.4230754/1‑94 (MQ=60)
GTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAG < SRR4302544.770116/94‑1 (MQ=60)
GATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGG < SRR4302544.2141126/94‑1 (MQ=60)
GCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGC < SRR4302544.407746/94‑1 (MQ=60)
GGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATA < SRR4302544.4508467/94‑1 (MQ=60)
CGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATC < SRR4302544.1655735/94‑1 (MQ=60)
GCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCA < SRR4302544.1331763/94‑1 (MQ=60)
CAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAA > SRR4302544.4023488/1‑94 (MQ=60)
AATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAAT < SRR4302544.4472559/94‑1 (MQ=60)
AATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAAT > SRR4302544.1536684/1‑94 (MQ=60)
ATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGTGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATA < SRR4302544.2379493/94‑1 (MQ=60)
ATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATA < SRR4302544.2655241/94‑1 (MQ=60)
CCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACC < SRR4302544.3080971/94‑1 (MQ=60)
CCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACC > SRR4302544.3644219/1‑94 (MQ=60)
CCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACC < SRR4302544.244203/94‑1 (MQ=60)
ATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCT > SRR4302544.446964/1‑94 (MQ=60)
ACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTA < SRR4302544.1341034/94‑1 (MQ=60)
ACAATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTA < SRR4302544.2293355/94‑1 (MQ=60)
CAATCCCACCGCCGACGAGGAACATCGCCAGCGTGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAA < SRR4302544.2476894/94‑1 (MQ=60)
AATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAAT < SRR4302544.4000031/94‑1 (MQ=60)
AATCCAACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAAT < SRR4302544.4389935/94‑1 (MQ=60)
ATCCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATG < SRR4302544.3548848/94‑1 (MQ=60)
CCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCC > SRR4302544.1657232/1‑94 (MQ=60)
CCCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCC < SRR4302544.2530734/94‑1 (MQ=60)
CCCCCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCT < SRR4302544.2447918/94‑1 (MQ=60)
CCACCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCT < SRR4302544.4107730/94‑1 (MQ=60)
CCCGCCGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGC < SRR4302544.4140259/94‑1 (MQ=60)
CGACGAGGAACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAG > SRR4302544.4739776/1‑94 (MQ=60)
AACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGG < SRR4302544.4177887/94‑1 (MQ=60)
AACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGG > SRR4302544.2665929/1‑94 (MQ=60)
ACATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGA < SRR4302544.1553750/94‑1 (MQ=60)
CATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGAT > SRR4302544.3682222/1‑94 (MQ=60)
CATCGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGAT < SRR4302544.2941833/94‑1 (MQ=60)
CGCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGATTTT > SRR4302544.3635218/1‑94 (MQ=60)
GCCAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGATTTTT < SRR4302544.4708812/94‑1 (MQ=60)
CAGCGCGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGATTTTTCC < SRR4302544.1562362/94‑1 (MQ=60)
CGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGATTTTTCCGCCAG < SRR4302544.4729759/94‑1 (MQ=60)
CGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGATTTTTCCGCCAG < SRR4302544.862964/94‑1 (MQ=60)
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CTTTGCTGCCCGGCGAAATGTTCAATGGCGTGATGCAGCGGCGCAATTCCATGTACCACAATCCCACCGCCGACGAGGAACATCGCCAGCGTGCCGACAATCGATAACGCTTTCATCAGCCAGGGCGCGATAATCAATAACCCTTTACCTAATGCCTGCATCAGCGCGCTGGATTTTTCCGCCAG > NC_000913/2026589‑2026773
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
