Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,072,384 |
(C)6→5 |
coding (2824/3120 nt) |
b2000 → |
outer membrane fluffing protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,072,379 | 0 | C | . | 97.1%
| 439.8
/ 4.0
| 103 | coding (2819/3120 nt) | b2000 | outer membrane fluffing protein |
| Reads supporting (aligned to +/- strand): ref base C (1/2); new base . (49/51); total (50/53) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
Only 100 of 112 total aligned reads displayed.
TTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCC > NC_000913/2072288‑2072467
|
cGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcccc > 1:4330156/1‑93 (MQ=255)
gggCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccc < 1:3821527/93‑1 (MQ=255)
gggCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccc > 2:502609/1‑93 (MQ=255)
gggCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccc < 1:2173420/93‑1 (MQ=255)
gCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCt < 1:4703125/93‑1 (MQ=255)
cATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccctgc > 2:4455707/1‑90 (MQ=255)
cATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccctgc < 2:447093/93‑4 (MQ=255)
tGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGTCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGt > 2:2067028/1‑93 (MQ=255)
gCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGa > 1:1049411/1‑93 (MQ=255)
gCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGa > 1:590731/1‑93 (MQ=255)
gCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGa < 1:1323418/93‑1 (MQ=255)
gaGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGAc < 1:23052/92‑1 (MQ=255)
cAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGAc < 1:2003453/93‑1 (MQ=255)
aGTGCACAACATATGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACa < 1:2316706/93‑1 (MQ=255)
gCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTg > 1:206168/1‑93 (MQ=255)
gCACAACAGCTGCGTGCCGGTTTCGGTCTGGGCAGCAGCAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTg < 1:538318/93‑1 (MQ=255)
cacaACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGc < 2:180807/93‑1 (MQ=255)
cacaACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGc < 2:2470980/93‑1 (MQ=255)
acaacaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCa > 1:2482019/1‑93 (MQ=255)
acaacaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCa > 2:3707225/1‑93 (MQ=255)
acaacaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTAGCGAAGGCACCTAATCCCGTG‑CCCCCTGCGTGACAGTGCa > 1:705298/1‑93 (MQ=255)
acaTGTGGGTGGCGGTGTGCGTCGGGGAAGGCACAACGATACGCCCTGTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCaaaa < 1:277761/93‑1 (MQ=255)
acaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCaaaa > 2:1872896/1‑93 (MQ=255)
acaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCaaaa > 1:3607378/1‑93 (MQ=255)
acaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCaaaa > 2:1866492/1‑93 (MQ=255)
caTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAac < 2:1833844/93‑1 (MQ=255)
aTGGGCGTGCAGGTTTACGTCTGGGCAGCCACAACAATATGACCTTTGGCAAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAaca < 2:4200866/93‑1 (MQ=255)
tgtgCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAacac < 2:1458841/93‑1 (MQ=255)
tgcgtgcgTCTTTCCTTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAg < 2:766229/93‑1 (MQ=255)
gcgtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAgt > 2:1418522/1‑93 (MQ=255)
gtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAgtgt < 1:2072622/93‑1 (MQ=255)
gtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAgtgt < 2:4546310/93‑1 (MQ=255)
gtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAgtgt > 1:3000202/1‑93 (MQ=255)
tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGtgtg > 1:2232424/1‑93 (MQ=255)
tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGcgtg < 1:2685759/93‑1 (MQ=255)
gcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtga < 2:3679266/93‑1 (MQ=255)
ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtgag < 1:3086212/93‑1 (MQ=255)
ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtgag < 1:2087410/93‑1 (MQ=255)
cGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtgagt > 1:70339/1‑93 (MQ=255)
gTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtgagtga > 1:3773445/1‑93 (MQ=255)
gTTTCCGTCTGGGCAGCCACAACGATATGACCTTTCGCGAAGGCACCTAATCCCGTGCCCCCCTGCGTGACAGTGCAAAAAACAGTgtaagtg > 1:163245/1‑93 (MQ=255)
ttgccGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGaa < 1:1180447/90‑1 (MQ=255)
tCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAAtt > 1:2370958/1‑93 (MQ=255)
tCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAAtt > 1:4273411/1‑93 (MQ=255)
ccGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTa < 1:2328834/93‑1 (MQ=255)
ccGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTa > 2:441309/1‑93 (MQ=255)
cGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAc < 2:2711141/93‑1 (MQ=255)
cGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAc > 1:400051/1‑93 (MQ=255)
tCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCg > 1:1175924/1‑93 (MQ=255)
tCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCg < 1:1305825/93‑1 (MQ=255)
cTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCgg < 2:1835360/93‑1 (MQ=255)
tGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGt < 1:777157/93‑1 (MQ=255)
gggCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTg < 1:2248014/93‑1 (MQ=255)
gCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGaa < 2:189689/93‑1 (MQ=255)
gCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGaa < 2:1540984/93‑1 (MQ=255)
catccACAACTATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAAc < 1:226208/90‑1 (MQ=255)
cAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAAc < 2:67984/93‑1 (MQ=255)
aGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACt > 2:2652431/1‑93 (MQ=255)
aGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACt < 2:1993540/93‑1 (MQ=255)
gCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtg > 1:297707/1‑93 (MQ=255)
cacaACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtggt > 1:1782083/1‑93 (MQ=255)
acaACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtggtg > 2:3323337/1‑93 (MQ=255)
acaACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtggtg > 2:3326559/1‑93 (MQ=255)
gATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAc > 2:3359057/1‑93 (MQ=255)
gATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAc > 1:4604790/1‑93 (MQ=255)
gATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAc > 1:3718120/1‑93 (MQ=255)
gATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGGAc > 2:4287350/1‑93 (MQ=255)
atatGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAc < 1:4651837/93‑1 (MQ=255)
atatGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACa > 2:3825943/1‑93 (MQ=255)
atatGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACa > 2:3298813/1‑93 (MQ=255)
tatGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTagag > 2:881291/1‑93 (MQ=255)
tatGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAg > 2:1482860/1‑93 (MQ=255)
tatGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTAGTGGGTACAg < 1:3706193/93‑1 (MQ=255)
atGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGc > 2:336069/1‑93 (MQ=255)
atGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGc > 2:336068/1‑93 (MQ=255)
tGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGcc > 1:599323/1‑93 (MQ=255)
gACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCt > 1:875357/1‑93 (MQ=255)
gACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCt < 2:61273/93‑1 (MQ=255)
ccTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTc > 2:4708290/1‑93 (MQ=255)
cTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCt < 2:2970485/93‑1 (MQ=255)
cTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCt < 1:2329448/93‑1 (MQ=255)
cTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCt > 1:448071/1‑93 (MQ=255)
tttGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTg < 1:1606853/93‑1 (MQ=255)
tttGGCGAAGGCACCTCATCCCGTG‑CACCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTg > 2:530916/1‑93 (MQ=255)
tGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGtt < 1:1363507/93‑1 (MQ=255)
ggCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTa > 2:3180633/1‑93 (MQ=255)
gAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATcc > 2:4484643/1‑93 (MQ=255)
gAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATcc > 2:447244/1‑93 (MQ=255)
cACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCAcc < 1:3719485/93‑1 (MQ=255)
aCCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt < 1:3600750/93‑1 (MQ=255)
cTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTc > 2:1427517/1‑93 (MQ=255)
cTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTc > 2:4280533/1‑93 (MQ=255)
cTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTc < 1:38852/93‑1 (MQ=255)
tCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCa < 1:4179393/93‑1 (MQ=255)
aTCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGc < 2:2544494/93‑1 (MQ=255)
tCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCt > 1:3877953/1‑93 (MQ=255)
tCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCt > 1:4648436/1‑93 (MQ=255)
tCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCt > 2:2672855/1‑93 (MQ=255)
cccGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTc > 1:2880375/1‑93 (MQ=255)
ccGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTcc < 2:1713694/93‑1 (MQ=255)
|
TTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCC > NC_000913/2072288‑2072467
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGA > NC_000913/2072291‑2072475
|
GGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCT < SRR4302544.2194018/94‑1 (MQ=60)
GGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCT < SRR4302544.3859412/94‑1 (MQ=60)
GCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTG < SRR4302544.4749609/94‑1 (MQ=60)
GGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGA > SRR4302544.1059809/1‑94 (MQ=60)
GGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGA > SRR4302544.596532/1‑94 (MQ=60)
GCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGAC < SRR4302544.1336436/94‑1 (MQ=60)
GAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACA < SRR4302544.23278/94‑1 (MQ=60)
CAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACA < SRR4302544.2022914/94‑1 (MQ=60)
AGTGCACAACATATGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAG < SRR4302544.2338633/94‑1 (MQ=60)
TGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTG > SRR4302544.208276/1‑94 (MQ=60)
GCACAACAGCTGCGTGCCGGTTTCGGTCTGGGCAGCAGCAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGC < SRR4302544.543635/94‑1 (MQ=60)
CACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCA > SRR4302544.2505781/1‑94 (MQ=60)
CACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTAGCGAAGGCACCTAATCCCGTG‑CCCCCTGCGTGACAGTGCA > SRR4302544.712309/1‑94 (MQ=60)
AACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAA > SRR4302544.3642473/1‑94 (MQ=60)
ACATGTGGGTGGCGGTGTGCGTCGGGGAAGGCACAACGATACGCCCTGTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAAC < SRR4302544.280662/94‑1 (MQ=35)
TGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGT < SRR4302544.2825794/94‑1 (MQ=60)
GCGTGCGGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTG < SRR4302544.2325788/94‑1 (MQ=60)
CGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGT > SRR4302544.3028963/1‑94 (MQ=60)
GTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTG > SRR4302544.2253422/1‑94 (MQ=60)
GTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTG < SRR4302544.2092537/94‑1 (MQ=60)
TGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGCGTGA < SRR4302544.2711497/94‑1 (MQ=60)
GCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAG < SRR4302544.4475962/94‑1 (MQ=60)
CCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGT < SRR4302544.3115620/94‑1 (MQ=60)
CCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGT < SRR4302544.2107493/94‑1 (MQ=60)
CCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGT > SRR4302544.71025/1‑94 (MQ=60)
CGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCTCCTGCGTGACAGTGCAAAACACAGTGTGAGTG < SRR4302544.638167/94‑1 (MQ=60)
GGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGA > SRR4302544.3810843/1‑94 (MQ=60)
GGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTCGCGAAGGCACCTAATCCCGTGCCCCCCTGCGTGACAGTGCAAAAAACAGTGTAAGTG > SRR4302544.164838/1‑94 (MQ=60)
TTGCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAAT < SRR4302544.1192197/94‑1 (MQ=60)
TTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATT > SRR4302544.2393394/1‑94 (MQ=60)
TTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATT > SRR4302544.4317038/1‑94 (MQ=60)
CCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAC < SRR4302544.2350913/94‑1 (MQ=60)
CCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAC > SRR4302544.404115/1‑94 (MQ=60)
GTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCG > SRR4302544.1187647/1‑94 (MQ=60)
TCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGG < SRR4302544.1318660/94‑1 (MQ=60)
TGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTG < SRR4302544.784696/94‑1 (MQ=60)
TGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTG < SRR4302544.3780618/94‑1 (MQ=60)
GGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGA < SRR4302544.2269144/94‑1 (MQ=60)
CATCCACAACTATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACT < SRR4302544.228555/94‑1 (MQ=60)
AGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTG > SRR4302544.300784/1‑94 (MQ=60)
CCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGT > SRR4302544.1799511/1‑94 (MQ=60)
CGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAC > SRR4302544.3755104/1‑94 (MQ=60)
CGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAC > SRR4302544.4650549/1‑94 (MQ=60)
ATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACA < SRR4302544.4697876/94‑1 (MQ=60)
TATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTAGTGGGTACAGC < SRR4302544.3743075/94‑1 (MQ=60)
ATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCC > SRR4302544.605193/1‑94 (MQ=60)
TGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCT > SRR4302544.884042/1‑94 (MQ=60)
CCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCT > SRR4302544.452530/1‑94 (MQ=60)
CTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTG < SRR4302544.2351533/94‑1 (MQ=60)
TTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGT < SRR4302544.1622694/94‑1 (MQ=60)
TGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTA < SRR4302544.1377057/94‑1 (MQ=60)
CACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCT < SRR4302544.3756477/94‑1 (MQ=60)
ACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTT < SRR4302544.1905342/94‑1 (MQ=60)
ACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTT < SRR4302544.3635539/94‑1 (MQ=60)
CTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCA < SRR4302544.39237/94‑1 (MQ=60)
TCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAG < SRR4302544.4220789/94‑1 (MQ=60)
ATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCT > SRR4302544.4694452/1‑94 (MQ=60)
ATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCT > SRR4302544.3916455/1‑94 (MQ=60)
TCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTC > SRR4302544.2908168/1‑94 (MQ=60)
CGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCG < SRR4302544.277281/94‑1 (MQ=60)
cgcgCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTTAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCG < SRR4302544.277280/90‑1 (MQ=60)
GTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGG < SRR4302544.4187795/94‑1 (MQ=60)
tgCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGG < SRR4302544.1550971/92‑1 (MQ=60)
GCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGG < SRR4302544.3833013/94‑1 (MQ=60)
CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTTGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGA < SRR4302544.770472/94‑1 (MQ=60)
CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGA < SRR4302544.1452548/94‑1 (MQ=60)
CCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGA > SRR4302544.4566408/1‑94 (MQ=60)
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GGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGA > NC_000913/2072291‑2072475
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
