Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,072,384	(C)_6→5	coding (2824/3120 nt)	b2000 →	outer membrane fluffing protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,072,379	0	C	.	100.0%	996.5 / NA	215	coding (2819/3120 nt)	b2000	outer membrane fluffing protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (102/113); total (102/113)

Only 100 of 234 total aligned reads displayed.

GTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCC  >  NC_000913/2072287‑2072467

 ttCGGGCATGGCAGTGCACAACATGTGCTTGCCGTTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGcc                                                                                         <  2:1695303/93‑1 (MQ=255)

     ggCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGGACCTCATCCCGTGccccct                                                                                     >  2:4443808/1‑92 (MQ=255)

     ggCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccct                                                                                     <  1:5752333/93‑2 (MQ=255)

      gCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGccccctg                                                                                    <  2:801434/93‑3 (MQ=255)

         tGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGt                                                                                >  2:6588086/1‑93 (MQ=255)

         tGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGt                                                                                <  2:3648118/93‑1 (MQ=255)

         tGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGt                                                                                >  2:3755991/1‑93 (MQ=255)

          ggCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTg                                                                               >  2:3903811/1‑93 (MQ=255)

           gCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGa                                                                              >  2:760049/1‑93 (MQ=255)

           gCAGTGCACAACATGTGCGTGACGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGa                                                                              >  1:2795107/1‑93 (MQ=255)

            cAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGAc                                                                             >  1:5111891/1‑93 (MQ=255)

             aGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACa                                                                            <  2:2414831/93‑1 (MQ=255)

              gggCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACGTCATCCCGTG‑CCCCCTGCGTGACAg                                                                           >  2:6482204/3‑93 (MQ=255)

              gTGCACAACATGTGCGTGCCGTTTTCCGGCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAg                                                                           <  1:1020932/93‑1 (MQ=255)

              gTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAg                                                                           <  1:2225751/93‑1 (MQ=255)

              gTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAg                                                                           <  2:5779382/93‑1 (MQ=255)

              gTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAg                                                                           >  1:6523165/1‑93 (MQ=255)

              gTGCAAAACATGTGCTTGCCGGTTTCCTTTGGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCTTGCGTGACAg                                                                           <  1:1757875/93‑1 (MQ=255)

               tGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGAGCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGt                                                                          <  2:6172569/93‑1 (MQ=255)

               tGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGt                                                                          <  1:94932/93‑1 (MQ=255)

                gCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTg                                                                         >  2:3237823/1‑93 (MQ=255)

                  acaacaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCa                                                                       >  1:3654091/1‑93 (MQ=255)

                  acaacaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCa                                                                       >  1:6577028/1‑93 (MQ=255)

                  acaacaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCa                                                                       >  2:2133813/1‑93 (MQ=255)

                    aacaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCaaa                                                                     >  2:2966710/1‑93 (MQ=255)

                     acaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCaaaa                                                                    >  2:5271583/1‑93 (MQ=255)

                     acaTGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCaaaa                                                                    <  2:3133477/93‑1 (MQ=255)

                       aTGTGCGTGCCGGTTTCCGTCTGGGTAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAaca                                                                  <  1:4054003/93‑1 (MQ=255)

                             gtgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAgtgt                                                            <  1:3474287/93‑1 (MQ=255)

                              tgcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGtgtg                                                           <  1:2149675/93‑1 (MQ=255)

                               gcCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtga                                                          >  1:2191436/1‑93 (MQ=255)

                                ccGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtgag                                                         <  2:5922906/93‑1 (MQ=255)

                                 cGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtgagt                                                        >  1:4765872/1‑93 (MQ=255)

                                   gTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTgtgagtga                                                      >  1:85056/1‑93 (MQ=255)

                                    tttCCGTCTGGGCAGCCACAACTATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGaa                                                     <  2:5015252/93‑1 (MQ=255)

                                    tttCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGaa                                                     <  1:1786581/93‑1 (MQ=255)

                                       ccGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTa                                                  <  1:1160450/93‑1 (MQ=255)

                                        cggcTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAc                                                 <  2:481833/90‑1 (MQ=255)

                                        cGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAc                                                 >  2:4368155/1‑93 (MQ=255)

                                         gTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAcc                                                >  2:3839107/1‑93 (MQ=255)

                                          tCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCg                                               <  1:2315548/93‑1 (MQ=255)

                                          tCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCg                                               >  1:1416200/1‑93 (MQ=255)

                                             gggCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTg                                            >  1:6270394/1‑93 (MQ=255)

                                              ggCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGa                                           >  1:3384734/1‑93 (MQ=255)

                                              ggCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGa                                           <  2:282163/93‑1 (MQ=255)

                                                cAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAAc                                         <  1:4705520/93‑1 (MQ=255)

                                                cAGCCACAACGATATGACCTTTGGCGAACGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCCGTGAAc                                         <  1:5805249/93‑1 (MQ=255)

                                                  gCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtg                                       >  2:3061626/1‑93 (MQ=255)

                                                   ccACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtgg                                      <  1:3240189/93‑1 (MQ=255)

                                                   ccACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtgg                                      >  1:3943123/1‑93 (MQ=255)

                                                    cacaACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtggt                                     >  1:565597/1‑93 (MQ=255)

                                                    cacaACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtggg                                     >  2:2107220/1‑92 (MQ=255)

                                                     acaACGATATGACCTTTGGCGAAGGCACTTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtggtg                                    <  2:6445658/93‑1 (MQ=255)

                                                      caACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACtggtgg                                   <  2:161685/93‑1 (MQ=255)

                                                       aaCGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTggg                                  >  1:4580887/1‑93 (MQ=255)

                                                        aCGATATGACCTTTGGCGAAGGCACCTCATCGCGTG‑GCCCCTGCGTGACAGTGCAAAAGACAGTGTGAGGGAATTACCGGTGAACTgggggga                                 >  2:1523462/1‑92 (MQ=255)

                                                        aCGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGt                                 <  1:2458212/93‑1 (MQ=255)

                                                        aCGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGt                                 <  1:3584449/93‑1 (MQ=255)

                                                        aCGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGt                                 >  1:3764237/1‑93 (MQ=255)

                                                        aCGATATGACCTTTGGCGAAGGCACCTCAGCCCGTG‑CCCCCTGCGTGACAGTGCAAAACCCAGTGTGAGTGAATTACCGGTGAACTGGTGGGt                                 <  1:1100055/93‑1 (MQ=255)

                                                         cGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTa                                >  2:5887803/1‑93 (MQ=255)

                                                          gATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAc                               >  2:1858040/1‑93 (MQ=255)

                                                          gATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAc                               <  2:1043461/93‑1 (MQ=255)

                                                          gATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAc                               >  2:1729055/1‑93 (MQ=255)

                                                            tatGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAg                             >  1:6407391/1‑93 (MQ=255)

                                                            tatGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAg                             >  1:6656565/1‑93 (MQ=255)

                                                              tGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGcc                           <  2:5188236/93‑1 (MQ=255)

                                                              tGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGcc                           >  1:775676/1‑93 (MQ=255)

                                                              tGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGcc                           <  1:3037875/93‑1 (MQ=255)

                                                               gACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCt                          >  2:6335175/1‑93 (MQ=255)

                                                                gccTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCtt                         <  2:2322546/92‑1 (MQ=255)

                                                                aCCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCtt                         <  2:6626393/93‑1 (MQ=255)

                                                                 ccTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTc                        >  2:1396518/1‑93 (MQ=255)

                                                                 ccTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTc                        >  2:42296/1‑93 (MQ=255)

                                                                 ccTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGACTTc                        >  1:1343473/1‑93 (MQ=255)

                                                                   tttGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTg                      >  2:3117116/1‑93 (MQ=255)

                                                                   tttGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTg                      >  2:3428952/1‑93 (MQ=255)

                                                                    ttGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGt                     >  2:2570298/1‑93 (MQ=255)

                                                                     tGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGtt                    <  2:5127516/93‑1 (MQ=255)

                                                                      ggCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTa                   <  1:2972881/93‑1 (MQ=255)

                                                                       gCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTAt                  >  2:4114365/1‑93 (MQ=255)

                                                                        cGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATc                 <  2:5496163/93‑1 (MQ=255)

                                                                         gAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATcc                >  1:4342923/1‑93 (MQ=255)

                                                                         gAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATcc                >  2:5604108/1‑93 (MQ=255)

                                                                          aaGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCg               >  1:5215155/1‑93 (MQ=255)

                                                                           aGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGc              >  1:6091440/1‑93 (MQ=255)

                                                                               aCCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt          <  1:2647810/93‑1 (MQ=255)

                                                                               aCCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt          >  2:1102476/1‑93 (MQ=255)

                                                                               aCCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt          >  2:5100972/1‑93 (MQ=255)

                                                                               aCCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCt          <  1:4371520/93‑1 (MQ=255)

                                                                                 ctaaTCCCGAG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGAGAATTACCGGTGAACTGGTGGGTACAGCCTTATGAAATCCGAACCTTc        <  1:6724475/90‑1 (MQ=255)

                                                                                  tCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCa       >  1:2909077/1‑93 (MQ=255)

                                                                                  ccATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCa       <  1:5917684/92‑1 (MQ=255)

                                                                                   cATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTTGGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAg      <  1:6065071/93‑1 (MQ=255)

                                                                                   cATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAg      >  1:4991807/1‑93 (MQ=255)

                                                                                   cATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAg      <  1:916524/93‑1 (MQ=255)

                                                                                   cATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAg      >  2:272770/1‑93 (MQ=255)

                                                                                    aTCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGc     <  1:1281001/93‑1 (MQ=255)

                                                                                      cccGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTc   >  1:4183580/1‑93 (MQ=255)

                                                                                      cccGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTc   <  2:1320774/93‑1 (MQ=255)

GTTCGGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCC  >  NC_000913/2072287‑2072467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATA  >  NC_000913/2072291‑2072477

GGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCT                                                                                               >  SRR4302536.341309/1‑94 (MQ=60)

GGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCT                                                                                               <  SRR4302536.2574904/94‑1 (MQ=60)

     TGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTG                                                                                         <  SRR4302536.2979967/94‑1 (MQ=60)

      GGCAGTGCACAACATGTGCGTGACGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGA                                                                                        >  SRR4302536.2878041/1‑94 (MQ=60)

       GCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGAC                                                                                       >  SRR4302536.5264645/1‑94 (MQ=60)

        CAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACA                                                                                      <  SRR4302536.4718884/94‑1 (MQ=60)

         AGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAG                                                                                     >  SRR4302536.6717485/1‑94 (MQ=60)

         AGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAG                                                                                     <  SRR4302536.2457459/94‑1 (MQ=60)

          GTGCACAACATGTGCGTGCCGTTTTCCGGCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGT                                                                                    <  SRR4302536.1051156/94‑1 (MQ=60)

          GTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGT                                                                                    <  SRR4302536.2293071/94‑1 (MQ=60)

          GTGCAAAACATGTGCTTGCCGGTTTCCTTTGGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCTTGCGTGACAGT                                                                                    <  SRR4302536.1810420/94‑1 (MQ=60)

           tactCAACATGTGCGTGGCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTG                                                                                   <  SRR4302536.2265294/90‑1 (MQ=60)

           TGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTG                                                                                   <  SRR4302536.97453/94‑1 (MQ=60)

           TGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTG                                                                                   <  SRR4302536.5439761/94‑1 (MQ=60)

           TGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTG                                                                                   <  SRR4302536.4055487/94‑1 (MQ=60)

            GCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGC                                                                                  <  SRR4302536.136466/94‑1 (MQ=60)

             CACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCA                                                                                 >  SRR4302536.6772766/1‑94 (MQ=60)

             CACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCA                                                                                 >  SRR4302536.3763331/1‑94 (MQ=60)

              ccacccTGTGCTTGCCGGTTTCCGTCTGGTCAGCCACAACGATATGACCTTTGTCGAAGCCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAA                                                                                <  SRR4302536.3408717/88‑1 (MQ=60)

              ACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAA                                                                                <  SRR4302536.3723461/94‑1 (MQ=60)

              ACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAA                                                                                >  SRR4302536.4999617/1‑94 (MQ=60)

               CAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAA                                                                               >  SRR4302536.5829492/1‑94 (MQ=60)

                  CATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACA                                                                            <  SRR4302536.4368880/94‑1 (MQ=60)

                   ATGTGCGTGCCGGTTTCCGTCTGGGTAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACAC                                                                           <  SRR4302536.4174184/94‑1 (MQ=60)

                   ATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACAC                                                                           >  SRR4302536.1596441/1‑94 (MQ=60)

                   ATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACAC                                                                           <  SRR4302536.1991437/94‑1 (MQ=60)

                     GTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAG                                                                         <  SRR4302536.3124762/94‑1 (MQ=60)

                      TGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGT                                                                        <  SRR4302536.6814021/94‑1 (MQ=60)

                      TGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGT                                                                        <  SRR4302536.3239916/94‑1 (MQ=60)

                        CGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGT                                                                      <  SRR4302536.764542/94‑1 (MQ=60)

                         GTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTG                                                                     <  SRR4302536.3577848/94‑1 (MQ=60)

                         GTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTG                                                                     >  SRR4302536.5147663/1‑94 (MQ=60)

                         GTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTG                                                                     <  SRR4302536.4751443/94‑1 (MQ=60)

                          TGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGA                                                                    <  SRR4302536.2214229/94‑1 (MQ=60)

                          TGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGA                                                                    >  SRR4302536.2257535/1‑94 (MQ=60)

                            CCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGT                                                                  <  SRR4302536.4870406/94‑1 (MQ=60)

                            CCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGT                                                                  <  SRR4302536.5860780/94‑1 (MQ=60)

                            CCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGT                                                                  >  SRR4302536.4909401/1‑94 (MQ=60)

                              GGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGA                                                                >  SRR4302536.87337/1‑94 (MQ=60)

                              GGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGA                                                                >  SRR4302536.1261776/1‑94 (MQ=60)

                               GTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAA                                                               <  SRR4302536.4280726/94‑1 (MQ=60)

                                TTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAAT                                                              <  SRR4302536.1840567/94‑1 (MQ=60)

                                 TTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCGCTGCGTGACAGCGCAAAAAACAGTGagacagaata                                                             >  SRR4302536.5639778/1‑84 (MQ=60)

                                   CCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTAC                                                           <  SRR4302536.1195387/94‑1 (MQ=60)

                                    CGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACC                                                          >  SRR4302536.6242783/1‑94 (MQ=60)

                                     GTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCG                                                         >  SRR4302536.142818/1‑94 (MQ=60)

                                     GTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCG                                                         >  SRR4302536.1458296/1‑94 (MQ=60)

                                      TCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGG                                                        <  SRR4302536.2385822/94‑1 (MQ=60)

                                      TCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGG                                                        <  SRR4302536.864730/94‑1 (MQ=60)

                                        TGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTG                                                      >  SRR4302536.6457215/1‑94 (MQ=60)

                                         GGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGA                                                     >  SRR4302536.3485344/1‑94 (MQ=60)

                                           GCGGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAAC                                                   <  SRR4302536.4497884/94‑1 (MQ=60)

                                            CAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACT                                                  <  SRR4302536.6093117/94‑1 (MQ=60)

                                            CAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACT                                                  <  SRR4302536.4847020/94‑1 (MQ=60)

                                            CAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACT                                                  >  SRR4302536.5365479/1‑94 (MQ=60)

                                            CAGCCACAACGATATGACCTTTGGCGAACGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCCGTGAACT                                                  <  SRR4302536.5978141/94‑1 (MQ=60)

                                             TGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTG                                                 >  SRR4302536.2508641/1‑94 (MQ=60)

                                             AGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTG                                                 >  SRR4302536.1056129/1‑94 (MQ=60)

                                             AGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTG                                                 >  SRR4302536.3926310/1‑94 (MQ=60)

                                             AGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTG                                                 >  SRR4302536.6532454/1‑94 (MQ=60)

                                              GCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGG                                                >  SRR4302536.4060268/1‑94 (MQ=60)

                                               CCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGT                                               >  SRR4302536.579998/1‑94 (MQ=60)

                                               CCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGT                                               <  SRR4302536.3335158/94‑1 (MQ=60)

                                               CCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGT                                               >  SRR4302536.3557238/1‑94 (MQ=60)

                                                  CAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACGGGTGAACTGGTGGG                                            <  SRR4302536.6629532/94‑1 (MQ=60)

                                                  CAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGG                                            >  SRR4302536.4718388/1‑94 (MQ=60)

                                                  CAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGG                                            >  SRR4302536.128641/1‑94 (MQ=60)

                                                   AACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGT                                           >  SRR4302536.3876651/1‑94 (MQ=60)

                                                    ACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTA                                          <  SRR4302536.3691633/94‑1 (MQ=60)

                                                    ACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTA                                          <  SRR4302536.2532434/94‑1 (MQ=60)

                                                    ACGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTA                                          <  SRR4302536.3609372/94‑1 (MQ=60)

                                                    ACGATATGACCTTTGGCGAAGGCACCTCAGCCCGTG‑CCCCCTGCGTGACAGTGCAAAACCCAGTGTGAGTGAATTACCGGTGAACTGGTGGGTA                                          <  SRR4302536.1133058/94‑1 (MQ=60)

                                                     CGATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTAC                                         >  SRR4302536.2255880/1‑94 (MQ=60)

                                                      GATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACA                                        >  SRR4302536.4138771/1‑94 (MQ=60)

                                                      GATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACA                                        <  SRR4302536.4672226/94‑1 (MQ=60)

                                                       ATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTGCCGGTGAACTGGTGGGTACAG                                       <  SRR4302536.3029848/94‑1 (MQ=60)

                                                       ATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAG                                       >  SRR4302536.6598735/1‑94 (MQ=60)

                                                       ATATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAG                                       >  SRR4302536.6854396/1‑94 (MQ=60)

                                                        TATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGC                                      >  SRR4302536.1830670/1‑94 (MQ=60)

                                                        TATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGC                                      >  SRR4302536.386109/1‑94 (MQ=60)

                                                         ATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGGC                                     >  SRR4302536.950168/1‑94 (MQ=60)

                                                         ATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCC                                     >  SRR4302536.798401/1‑94 (MQ=60)

                                                         ATGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCC                                     <  SRR4302536.802495/94‑1 (MQ=60)

                                                          TGACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCT                                    <  SRR4302536.3127194/94‑1 (MQ=60)

                                                           GACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTT                                   >  SRR4302536.924448/1‑94 (MQ=60)

                                                            ACCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGACTTC                                  >  SRR4302536.1383527/1‑94 (MQ=60)

                                                             CCTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCT                                 >  SRR4302536.2863444/1‑94 (MQ=60)

                                                              CTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTG                                <  SRR4302536.2969893/94‑1 (MQ=60)

                                                              CTTTGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTG                                >  SRR4302536.235181/1‑94 (MQ=60)

                                                                 TGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTA                             <  SRR4302536.5933322/94‑1 (MQ=60)

                                                                 TGGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTA                             <  SRR4302536.1709050/94‑1 (MQ=60)

                                                                  GGCGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTAT                            <  SRR4302536.3060421/94‑1 (MQ=60)

                                                                    CGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCC                          <  SRR4302536.6753996/94‑1 (MQ=60)

                                                                    CGAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCC                          >  SRR4302536.4472954/1‑94 (MQ=60)

                                                                     GAAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCG                         >  SRR4302536.5370579/1‑94 (MQ=60)

                                                                      AAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGC                        >  SRR4302536.6779969/1‑94 (MQ=60)

                                                                      AAGGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGC                        >  SRR4302536.6273093/1‑94 (MQ=60)

                                                                        GGCACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGGGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCAC                      <  SRR4302536.6305085/94‑1 (MQ=60)

                                                                           CCCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTT                   <  SRR4302536.3637971/94‑1 (MQ=60)

                                                                           ACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTT                   <  SRR4302536.2727133/94‑1 (MQ=60)

                                                                           ACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTT                   <  SRR4302536.3251625/94‑1 (MQ=60)

                                                                           ACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTT                   <  SRR4302536.113426/94‑1 (MQ=60)

                                                                           ACCTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTT                   <  SRR4302536.4502107/94‑1 (MQ=60)

                                                                             CTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCA                 <  SRR4302536.5261474/94‑1 (MQ=60)

                                                                             CTCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCA                 >  SRR4302536.2994945/1‑94 (MQ=60)

                                                                              ctaatcccgagCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGAGAATTACCGGTGAACTGGTGGGTACAGCCTTATGAAATCCGAACCTTCA                 <  SRR4302536.6924208/83‑1 (MQ=60)

                                                                              TCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAG                >  SRR4302536.6507665/1‑94 (MQ=60)

                                                                              TCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAG                >  SRR4302536.5141634/1‑94 (MQ=60)

                                                                              CCATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAG                <  SRR4302536.6093954/94‑1 (MQ=60)

                                                                               CATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTTGGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGC               <  SRR4302536.6246010/94‑1 (MQ=60)

                                                                               CATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGC               <  SRR4302536.943543/94‑1 (MQ=60)

                                                                                ATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCT              <  SRR4302536.1001886/94‑1 (MQ=60)

                                                                                ATCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCT              <  SRR4302536.1319357/94‑1 (MQ=60)

                                                                                 TCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTC             >  SRR4302536.946002/1‑94 (MQ=60)

                                                                                 TCCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTC             >  SRR4302536.4307863/1‑94 (MQ=60)

                                                                                  CCCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCC            <  SRR4302536.2233734/94‑1 (MQ=60)

                                                                                  CCCGTG‑CCCCCTGCGTGACAGCGCAAAACACAGTGGGAGAGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCC            >  SRR4302536.4418164/1‑94 (MQ=60)

                                                                                   CCGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCC           >  SRR4302536.3551569/1‑94 (MQ=60)

                                                                                   CCGTG‑CCACCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCC           >  SRR4302536.6365352/1‑94 (MQ=60)

                                                                                    CGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCG          >  SRR4302536.5569951/1‑94 (MQ=60)

                                                                                    CGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCG          >  SRR4302536.3763777/1‑94 (MQ=60)

                                                                                    CGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCG          >  SRR4302536.4835703/1‑94 (MQ=60)

                                                                                    CGTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCG          >  SRR4302536.2870697/1‑94 (MQ=60)

                                                                                     GTG‑CCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGG         <  SRR4302536.2799708/94‑1 (MQ=60)

                                                                                       tgCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGG        <  SRR4302536.2159422/92‑1 (MQ=60)

                                                                                        GCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGG       <  SRR4302536.1711845/94‑1 (MQ=60)

                                                                                          CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAG     >  SRR4302536.4941751/1‑94 (MQ=60)

                                                                                          CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAG     <  SRR4302536.1959636/94‑1 (MQ=60)

                                                                                          CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAG     >  SRR4302536.520150/1‑94 (MQ=60)

                                                                                          CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAG     >  SRR4302536.5463451/1‑94 (MQ=60)

                                                                                          CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAG     <  SRR4302536.546232/94‑1 (MQ=60)

                                                                                          CCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAG     <  SRR4302536.5830547/94‑1 (MQ=60)

                                                                                           CCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGA    >  SRR4302536.3746161/1‑94 (MQ=60)

                                                                                           CCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGA    >  SRR4302536.339721/1‑94 (MQ=60)

                                                                                            CCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGAT   <  SRR4302536.4179632/94‑1 (MQ=60)

                                                                                            CCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGAT   <  SRR4302536.708208/94‑1 (MQ=60)

                                                                                             CTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATA  <  SRR4302536.2306355/94‑1 (MQ=60)

                                                                                             CTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATA  >  SRR4302536.6076331/1‑94 (MQ=60)

GGGCATGGCAGTGCACAACATGTGCGTGCCGGTTTCCGTCTGGGCAGCCACAACGATATGACCTTTGGCGAAGGCACCTCATCCCGTGCCCCCCTGCGTGACAGTGCAAAACACAGTGTGAGTGAATTACCGGTGAACTGGTGGGTACAGCCTTCTGTTATCCGCACCTTCAGCTCCCGGGGAGATA  >  NC_000913/2072291‑2072477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`