Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,075,196 |
(G)5→4 |
coding (63/369 nt) |
yeeU → |
putative structural protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,075,192 | 0 | G | . | 97.4%
| 504.2
/ 3.6
| 117 | coding (59/369 nt) | yeeU | putative structural protein |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base . (57/57); total (59/58) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.20e-01 |
Only 100 of 139 total aligned reads displayed.
CCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGT > NC_000913/2075100‑2075280
|
ccATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCtggtg > 2:4598363/1‑93 (MQ=255)
ccATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCtggtg > 1:2656449/1‑93 (MQ=255)
cATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCtggtgg < 2:3772782/93‑1 (MQ=255)
aTTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTggg < 1:1827590/93‑1 (MQ=255)
ttCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTgggg < 2:2478498/93‑1 (MQ=255)
tCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTggggc < 1:53027/93‑2 (MQ=255)
tCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTggggc > 1:2458351/1‑92 (MQ=255)
tttAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTggggct < 1:3481393/92‑3 (MQ=255)
cTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTggggct < 1:668079/93‑3 (MQ=255)
cTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTggggct > 2:2805715/1‑91 (MQ=255)
ttAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTggggctg > 2:4151739/1‑90 (MQ=255)
tgCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACCCTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGcc < 2:1597548/92‑1 (MQ=255)
gCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGccc < 2:172379/93‑1 (MQ=255)
gCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGccc < 2:4529137/93‑1 (MQ=255)
ccGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCt > 1:2306442/1‑93 (MQ=255)
cGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTg > 1:1370073/1‑93 (MQ=255)
gATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTg < 1:4528651/93‑1 (MQ=255)
gATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGc > 2:4345146/1‑93 (MQ=255)
gATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGc > 1:2541161/1‑93 (MQ=255)
tCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGt > 1:2451852/1‑93 (MQ=255)
tCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGt < 1:651540/93‑1 (MQ=255)
tGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGa > 1:1367522/1‑93 (MQ=255)
tGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGa > 1:1853791/1‑93 (MQ=255)
tGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGa > 1:3014175/1‑93 (MQ=255)
tGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCACTGCACCGCGa > 2:1847687/1‑93 (MQ=255)
gTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGAc < 2:1538484/93‑1 (MQ=255)
tAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACg > 1:1161212/1‑93 (MQ=255)
aaGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGc > 2:3381967/1‑93 (MQ=255)
aaGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGc < 2:4657775/93‑1 (MQ=255)
gATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCt < 1:2562540/93‑1 (MQ=255)
gATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCt < 2:447053/93‑1 (MQ=255)
aTTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTg < 1:2844396/93‑1 (MQ=255)
ttttATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGt < 2:2841225/93‑1 (MQ=255)
ttttATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGt > 2:2295544/1‑93 (MQ=255)
tttATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCCCCGTCAGCCCCTGtt > 2:4666051/1‑93 (MQ=255)
ttATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGttt > 1:1402294/1‑93 (MQ=255)
aTCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCg < 2:185152/93‑1 (MQ=255)
tCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCgg < 2:604492/93‑1 (MQ=255)
gtCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGGGCCGCCCTGTTTCGGGGcc > 1:1609232/1‑92 (MQ=255)
gcAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCAc < 1:3095563/92‑1 (MQ=255)
cAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACg < 2:186455/93‑1 (MQ=255)
gACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTc < 1:590005/93‑1 (MQ=255)
gACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTc > 2:1537004/1‑93 (MQ=255)
cacTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGt < 2:4355926/93‑1 (MQ=255)
cacTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGt < 1:1753887/93‑1 (MQ=255)
acTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTg > 1:3875648/1‑93 (MQ=255)
acTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTg > 2:1103286/1‑93 (MQ=255)
cTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTg > 2:3990009/1‑93 (MQ=255)
cTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGc < 2:2156190/93‑1 (MQ=255)
cTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGc < 2:2156191/93‑1 (MQ=255)
cTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGc < 2:3347156/93‑1 (MQ=255)
cTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGGTGCGGGGCACGTCTGGTGc > 2:4206707/1‑93 (MQ=255)
cTCCCCGGGACAACACTTCCCGACGACAACCCCGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGc < 2:4187150/93‑1 (MQ=255)
tCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCa < 2:1637616/93‑1 (MQ=255)
tCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCa > 2:1998410/1‑93 (MQ=255)
ccccGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCag < 2:1822876/93‑1 (MQ=255)
ccGGGACAACACTTCCCGACGACAATCCCGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCagga < 1:3378553/93‑1 (MQ=255)
ccGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCCGGGCTGGTGCaggg > 2:971247/1‑92 (MQ=255)
ccGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCagga < 1:4070681/93‑1 (MQ=255)
cGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCaggag > 1:651636/1‑93 (MQ=255)
cGGGACAACACTCCCGGACGCCAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCaggag < 2:984016/93‑1 (MQ=255)
cGGGACAACACTCCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACCCCCTGTTTCGGGGCACGTCTGGTGCaggag < 2:4280962/93‑1 (MQ=255)
ggACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTTCACCGTGACGCCCTGTTTCGGGGCTCGTCTGGTGCAGGAggg > 2:4215694/1‑93 (MQ=255)
ggACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCCCGTCTGGTGCAGGAggg > 1:3748936/1‑93 (MQ=255)
ggACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAggg < 1:586218/93‑1 (MQ=255)
gACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGt < 1:3802917/93‑1 (MQ=255)
caacaCTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTaa < 1:2256760/93‑1 (MQ=255)
caacaCTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGGaa > 2:3098184/1‑93 (MQ=255)
caacaCTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCCGTTTTGGGGGACGTCTTGTGCAGGGGGGtca > 2:3957646/1‑91 (MQ=255)
cacacTTCCCGACGACAATCACGATCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGTCGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAAc < 2:315368/92‑1 (MQ=255)
acacTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAAcc > 1:4382923/1‑93 (MQ=255)
acacTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAAcc < 2:4458642/93‑1 (MQ=255)
cacTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCg > 1:3778834/1‑93 (MQ=255)
cacTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGGAACCg > 2:504277/1‑93 (MQ=255)
cTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGt < 2:365327/93‑1 (MQ=255)
ccGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTTGTGCAGGAGGGGAACCGGTTGCa > 2:2629793/1‑93 (MQ=255)
ccGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCa < 1:2770202/93‑1 (MQ=255)
ccGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGGAACCGGTTGCa > 2:2684912/1‑93 (MQ=255)
cgacgaCAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCAt < 2:354143/93‑1 (MQ=255)
gacgacAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGCTGCAtt > 2:1605124/1‑93 (MQ=255)
gacgacAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGGAACCGGTTGCAtt > 2:4403128/1‑93 (MQ=255)
gacAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTAcc < 2:2302650/93‑1 (MQ=255)
acAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCt < 1:1210757/93‑1 (MQ=255)
acAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCt < 1:1317013/93‑1 (MQ=255)
acAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCt < 1:3244314/93‑1 (MQ=255)
cAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCtt < 2:1173672/93‑1 (MQ=255)
aaTCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTg < 1:2734750/93‑1 (MQ=255)
aaTCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTg < 1:2147409/93‑1 (MQ=255)
aTCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGc < 1:1929868/93‑1 (MQ=255)
aTCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTAACTTGc > 1:2253653/1‑93 (MQ=255)
gACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGAcc > 2:1615710/1‑93 (MQ=255)
gCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCgcgc > 1:1596207/1‑93 (MQ=255)
ccccTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGcc > 2:2160584/1‑93 (MQ=255)
cccTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCg > 2:765036/1‑93 (MQ=255)
ccTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCgg > 1:3180357/1‑93 (MQ=255)
ccTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCgg > 2:3942339/1‑93 (MQ=255)
ccTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCgg > 1:4536018/1‑93 (MQ=255)
ccTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCgg > 2:3318527/1‑93 (MQ=255)
ccTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGGCTGGTGCAGGAGGGTAACCGGTTGCATTAACTTGCCGACCGCGCCgg > 2:2338925/1‑93 (MQ=255)
cTGGT‑GGGGCTGCCCTGCACCGTGACGCACTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGt < 1:3084529/93‑1 (MQ=255)
|
CCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGT > NC_000913/2075100‑2075280
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGG > NC_000913/2075103‑2075288
|
TTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGC > SRR4302544.248467/1‑94 (MQ=60)
TTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGC > SRR4302544.2481803/1‑94 (MQ=60)
TTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTG < SRR4302544.3514579/94‑1 (MQ=60)
CTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTG < SRR4302544.674675/94‑1 (MQ=60)
GCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCT > SRR4302544.2328236/1‑94 (MQ=60)
CCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTG > SRR4302544.1383710/1‑94 (MQ=60)
CGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGC > SRR4302544.2565558/1‑94 (MQ=60)
GATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGC < SRR4302544.4573967/94‑1 (MQ=60)
TTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGT > SRR4302544.2475237/1‑94 (MQ=60)
TCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTG < SRR4302544.657994/94‑1 (MQ=60)
CTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGA > SRR4302544.3043073/1‑94 (MQ=60)
CTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGA > SRR4302544.1381118/1‑94 (MQ=60)
CTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGA > SRR4302544.1871723/1‑94 (MQ=60)
GTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACG > SRR4302544.1172783/1‑94 (MQ=60)
GATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTG < SRR4302544.2587157/94‑1 (MQ=60)
ATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGT < SRR4302544.2871864/94‑1 (MQ=60)
TTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTT > SRR4302544.1416262/1‑94 (MQ=60)
TGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGGGCCGCCCTGTTTCGGGGCC > SRR4302544.1625096/1‑94 (MQ=60)
TCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACG < SRR4302544.3125041/94‑1 (MQ=60)
GCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACG < SRR4302544.3125042/94‑1 (MQ=60)
CAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGT > SRR4302544.1363463/1‑94 (MQ=60)
AGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTC > SRR4302544.655140/1‑94 (MQ=60)
GACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCT < SRR4302544.4639267/94‑1 (MQ=60)
GACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCT < SRR4302544.2707927/94‑1 (MQ=60)
GACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCT < SRR4302544.595797/94‑1 (MQ=60)
ACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTG < SRR4302544.167138/94‑1 (MQ=60)
CACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTG < SRR4302544.1771055/94‑1 (MQ=60)
CACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTG > SRR4302544.3914134/1‑94 (MQ=60)
CACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTG < SRR4302544.4357718/94‑1 (MQ=60)
CCGGGACAACACTTCCCGACGACAATCCCGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAG < SRR4302544.3410802/94‑1 (MQ=60)
CCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAG > SRR4302544.658090/1‑94 (MQ=60)
CCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAG < SRR4302544.3410801/94‑1 (MQ=60)
CCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAG < SRR4302544.4111194/94‑1 (MQ=60)
GGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCCCGTCTGGTGCAGGAGGG > SRR4302544.3786177/1‑94 (MQ=60)
GGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGT < SRR4302544.591968/94‑1 (MQ=60)
GACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTA < SRR4302544.3840595/94‑1 (MQ=60)
CAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAAC < SRR4302544.2277995/94‑1 (MQ=60)
AACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACC > SRR4302544.4427313/1‑94 (MQ=60)
ACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCG > SRR4302544.3816267/1‑94 (MQ=60)
CCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCA > SRR4302544.671615/1‑94 (MQ=60)
CCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCAT < SRR4302544.2796855/94‑1 (MQ=60)
ACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTT < SRR4302544.1222743/94‑1 (MQ=60)
ACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTT < SRR4302544.3275374/94‑1 (MQ=60)
ACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTT < SRR4302544.1329964/94‑1 (MQ=60)
CAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTG < SRR4302544.3029301/94‑1 (MQ=60)
AATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGC < SRR4302544.2761111/94‑1 (MQ=60)
AATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGC < SRR4302544.2167864/94‑1 (MQ=60)
AATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTAACTTGC > SRR4302544.2274847/1‑94 (MQ=60)
ATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCC < SRR4302544.1948544/94‑1 (MQ=60)
ACCACGCCCGCCCCTGGT‑TGGGCTGGCCTGCACCGGGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCC < SRR4302544.1948543/94‑1 (MQ=60)
TCACGACCGCCCCTGGT‑GGGGCTGCCCTGCAACGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTTCCTTGCCG < SRR4302544.3733483/94‑1 (MQ=60)
CACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGA > SRR4302544.1461772/1‑94 (MQ=60)
ACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGC > SRR4302544.2355974/1‑94 (MQ=60)
CGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGC > SRR4302544.1611930/1‑94 (MQ=60)
CCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGG > SRR4302544.4581371/1‑94 (MQ=60)
CCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGG > SRR4302544.3210621/1‑94 (MQ=60)
CTGGT‑GGGGCTGCCCTGCACCGTGACGCACTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTA < SRR4302544.3113911/94‑1 (MQ=60)
gtGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCA < SRR4302544.685070/92‑1 (MQ=60)
gtGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGGCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCA < SRR4302544.685071/92‑1 (MQ=60)
TGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAG < SRR4302544.4140659/94‑1 (MQ=60)
GGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAG < SRR4302544.557448/94‑1 (MQ=60)
GGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGG < SRR4302544.259631/94‑1 (MQ=60)
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TTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGG > NC_000913/2075103‑2075288
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
