Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,106,960 |
T→C |
D216G (GAC→GGC) |
rfbX ← |
putative O‑antigen transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,106,960 | 0 | T | C | 99.5%
| 681.6
/ ‑5.1
| 211 | D216G (GAC→GGC) | rfbX | putative O‑antigen transporter |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (134/76); total (135/76) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 |
Only 100 of 213 total aligned reads displayed.
GACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCA > NC_000913/2106870‑2107049
|
gACGTTGGTCCAGATATAAATCCCAGTAGAATCACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCt < 1:3163431/93‑1 (MQ=255)
gACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCt < 2:2700500/93‑1 (MQ=255)
gACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCt > 2:2395578/1‑93 (MQ=255)
cGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGc < 1:1750430/93‑1 (MQ=255)
gTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCt < 2:1466754/93‑1 (MQ=255)
gTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCt > 1:3225025/1‑93 (MQ=255)
ggTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTaaa > 1:1556184/1‑93 (MQ=255)
gTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAg > 1:2999546/1‑93 (MQ=255)
tCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGa < 2:4473394/93‑1 (MQ=255)
tCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGa < 1:1381089/93‑1 (MQ=255)
ccAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGAt < 2:1151385/93‑1 (MQ=255)
cAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATc > 1:2063261/1‑93 (MQ=255)
aGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCg > 2:2474305/1‑93 (MQ=255)
aGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCg > 1:3721009/1‑93 (MQ=255)
atatAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGAc < 1:1631216/93‑1 (MQ=255)
tataAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACg > 2:2601040/1‑93 (MQ=255)
tataAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACg > 1:3310036/1‑93 (MQ=255)
taAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGca > 2:513318/1‑93 (MQ=255)
aaTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcaca < 1:4639994/93‑1 (MQ=255)
tCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACAtt > 2:4184869/1‑93 (MQ=255)
tCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACAtt < 2:3809020/93‑1 (MQ=255)
cccAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTa > 1:2852592/1‑93 (MQ=255)
cAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATg > 1:3274276/1‑93 (MQ=255)
ggATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTa > 1:2694016/1‑93 (MQ=255)
ggATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTa < 1:2654288/93‑1 (MQ=255)
ggATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTa < 2:666143/93‑1 (MQ=255)
ggATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTa > 1:3391889/1‑93 (MQ=255)
ggATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTa > 2:4276007/1‑93 (MQ=255)
ggATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTa < 1:1845852/93‑1 (MQ=255)
ggATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTa > 2:2017003/1‑93 (MQ=255)
gATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTaa < 2:3371958/93‑1 (MQ=255)
gATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTaa > 2:710189/1‑93 (MQ=255)
ataataACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAAt < 2:3575183/93‑1 (MQ=255)
taataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATg > 2:1691418/1‑93 (MQ=255)
taataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATg > 2:4610221/1‑93 (MQ=255)
aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGa > 2:851205/1‑93 (MQ=255)
aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGa > 2:3118539/1‑93 (MQ=255)
ataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGAt > 2:4145875/1‑93 (MQ=255)
ataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGAt > 2:3744500/1‑93 (MQ=255)
ataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGAt > 2:1512130/1‑93 (MQ=255)
taaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACAGCCTGCTAAAGATCGACGCACATTATGTAATGATa > 2:2361489/1‑93 (MQ=255)
aaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGGAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAg > 1:3057314/1‑93 (MQ=255)
aaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAg < 2:4021026/93‑1 (MQ=255)
aCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGc < 2:2912432/93‑1 (MQ=255)
aCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGc > 1:4028619/1‑93 (MQ=255)
aCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGc < 2:2017598/93‑1 (MQ=255)
aCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGc > 2:1984801/1‑93 (MQ=255)
cTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCg > 1:1911412/1‑93 (MQ=255)
tATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGt > 2:3904706/1‑93 (MQ=255)
ttCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTaa > 2:4125537/1‑93 (MQ=255)
ttCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTaa > 2:398631/1‑93 (MQ=255)
ttCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTaa > 2:155023/1‑93 (MQ=255)
ttCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTaa > 2:155143/1‑93 (MQ=255)
tCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAAc < 2:3185052/93‑1 (MQ=255)
cccGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACt < 2:3520455/93‑1 (MQ=255)
cGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACttt > 1:2327224/1‑93 (MQ=255)
cGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACttt < 2:4410793/93‑1 (MQ=255)
gTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTa > 2:3265496/1‑93 (MQ=255)
gTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTa > 1:4544363/1‑93 (MQ=255)
tAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTAc < 2:2409249/93‑1 (MQ=255)
tAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTAc < 1:4345224/93‑1 (MQ=255)
tAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTAc < 2:4520947/93‑1 (MQ=255)
aGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTAcc > 2:1845211/1‑93 (MQ=255)
aGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTAcc < 2:1878452/93‑1 (MQ=255)
gAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCa > 2:2326568/1‑93 (MQ=255)
gAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCa > 2:1336540/1‑93 (MQ=255)
aaTATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCaa > 1:1002012/1‑93 (MQ=255)
atatAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAAt > 1:1484802/1‑93 (MQ=255)
ataAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATcc < 1:859846/93‑1 (MQ=255)
taAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCa > 1:1042646/1‑93 (MQ=255)
aaaCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCac > 1:3336256/1‑92 (MQ=255)
aaCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAAc < 1:2478728/93‑1 (MQ=255)
tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt > 1:3550933/1‑93 (MQ=255)
tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATACAACCtt > 1:1667281/1‑93 (MQ=255)
aTAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCa < 1:197673/93‑1 (MQ=255)
aTAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCa > 1:2244271/1‑93 (MQ=255)
aGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACTAATCCAACCTTCATGaaa > 2:2231495/1‑92 (MQ=255)
aGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaac > 2:4614592/1‑93 (MQ=255)
gATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaaca > 1:2029760/1‑93 (MQ=255)
tgtgGAAATAAACACATGAAAAACGCCTGCTAAAGATCGTCGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCACGaacaac < 1:677329/93‑1 (MQ=255)
tgtgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaac > 1:3747994/1‑93 (MQ=255)
tgtgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaac > 2:1283050/1‑93 (MQ=255)
tgaggAAATAAAAACATGAAAACCGCCTGCTAAAGATAGACGCACATTATGTAATGATAGCGAAAGTTTACCAATCCAACCTTCATGaacaac > 2:3866321/4‑93 (MQ=255)
tgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGa > 2:2659851/1‑93 (MQ=255)
ggAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAt > 2:4372218/1‑93 (MQ=255)
aaaTAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAg > 2:2577356/1‑93 (MQ=255)
tAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTa < 2:3802534/93‑1 (MQ=255)
aaaaaCATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAg < 1:744349/93‑1 (MQ=255)
aaaaCATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGt > 2:2098722/1‑93 (MQ=255)
aaCATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGc > 1:550952/1‑93 (MQ=255)
aCATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTCACTTTACCACTCCAACCTTCATGAACAACGATAGCTAGTGCa > 1:3095155/1‑93 (MQ=255)
aTGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaat > 2:1260497/1‑93 (MQ=255)
aTGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaat < 1:2963007/93‑1 (MQ=255)
tGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaata > 2:1022690/1‑93 (MQ=255)
aaaaCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaataat < 2:1323614/93‑1 (MQ=255)
aaaaCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaataat > 1:2649487/1‑93 (MQ=255)
aaaCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAAtt < 2:566068/93‑1 (MQ=255)
aaCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTc > 2:1356166/1‑93 (MQ=255)
aaCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTc < 2:3653583/93‑1 (MQ=255)
ccGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCa < 1:121509/93‑1 (MQ=255)
|
GACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCA > NC_000913/2106870‑2107049
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCA > NC_000913/2106868‑2107052
|
CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCC < SRR4302544.783696/94‑1 (MQ=60)
CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCC < SRR4302544.233606/94‑1 (MQ=60)
CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCC > SRR4302544.3208125/1‑94 (MQ=60)
CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCC < SRR4302544.1557063/94‑1 (MQ=60)
GACGTTGGTCCAGATATAAATCCCAGTAGAATCACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTG < SRR4302544.3193522/94‑1 (MQ=60)
CGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCT < SRR4302544.1767563/94‑1 (MQ=60)
CGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCT < SRR4302544.4679197/94‑1 (MQ=60)
CGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCT > SRR4302544.3255838/1‑94 (MQ=60)
GTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTA > SRR4302544.30499/1‑94 (MQ=60)
TGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAA > SRR4302544.1571665/1‑94 (MQ=60)
GGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAG > SRR4302544.3028302/1‑94 (MQ=60)
TCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGAT < SRR4302544.1394877/94‑1 (MQ=60)
CCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATC > SRR4302544.2083097/1‑94 (MQ=60)
CCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATC > SRR4302544.1503213/1‑94 (MQ=60)
CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG > SRR4302544.3758018/1‑94 (MQ=60)
ATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACG > SRR4302544.3729470/1‑94 (MQ=60)
ATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACG > SRR4302544.1668035/1‑94 (MQ=60)
ATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACG < SRR4302544.1647270/94‑1 (MQ=60)
ATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACG > SRR4302544.3341561/1‑94 (MQ=60)
TATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGC > SRR4302544.314533/1‑94 (MQ=60)
AATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACAT < SRR4302544.4685956/94‑1 (MQ=60)
TCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTA > SRR4302544.2880155/1‑94 (MQ=60)
CCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATG > SRR4302544.3305493/1‑94 (MQ=60)
AGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTA > SRR4302544.2719871/1‑94 (MQ=60)
AGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTA > SRR4302544.3424316/1‑94 (MQ=60)
GGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAA < SRR4302544.1863732/94‑1 (MQ=60)
GGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAA > SRR4302544.3007061/1‑94 (MQ=60)
GGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAA < SRR4302544.2679742/94‑1 (MQ=60)
ATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATG < SRR4302544.3226848/94‑1 (MQ=60)
TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGA > SRR4302544.990171/1‑94 (MQ=60)
AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGAT > SRR4302544.2030544/1‑94 (MQ=60)
ATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATA > SRR4302544.2207650/1‑94 (MQ=60)
ATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATA < SRR4302544.1781803/94‑1 (MQ=60)
TAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGGAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAG > SRR4302544.3086495/1‑94 (MQ=60)
AACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGC > SRR4302544.4068748/1‑94 (MQ=60)
ACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCG > SRR4302544.1929881/1‑94 (MQ=60)
ACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCG > SRR4302544.1042730/1‑94 (MQ=60)
ACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCG > SRR4302544.615729/1‑94 (MQ=60)
ACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCG > SRR4302544.3852990/1‑94 (MQ=60)
CTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGT > SRR4302544.3428641/1‑94 (MQ=60)
ATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAA > SRR4302544.1708577/1‑94 (MQ=60)
ATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAA > SRR4302544.1708576/1‑94 (MQ=60)
TTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAAC < SRR4302544.1266856/94‑1 (MQ=60)
TCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACT > SRR4302544.2075085/1‑94 (MQ=60)
TCCCGTAGAATATAAACTAATAGCAGACGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACT > SRR4302544.3096188/1‑94 (MQ=60)
CCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTT > SRR4302544.2349285/1‑94 (MQ=60)
CGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTA > SRR4302544.4589762/1‑94 (MQ=60)
GTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTAC > SRR4302544.2323118/1‑94 (MQ=60)
TAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACC < SRR4302544.4389403/94‑1 (MQ=60)
AGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCA < SRR4302544.4559624/94‑1 (MQ=60)
GAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAA > SRR4302544.1011953/1‑94 (MQ=60)
AATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAAT > SRR4302544.1499471/1‑94 (MQ=60)
ATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCA < SRR4302544.868349/94‑1 (MQ=60)
ATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCA < SRR4302544.1212975/94‑1 (MQ=60)
ATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCA > SRR4302544.1052986/1‑94 (MQ=60)
TAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAC > SRR4302544.3368041/1‑94 (MQ=60)
TAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAA > SRR4302544.3368040/1‑94 (MQ=60)
AAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAAC > SRR4302544.2559319/1‑94 (MQ=60)
AACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACC < SRR4302544.2502444/94‑1 (MQ=60)
ACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCT < SRR4302544.4359202/94‑1 (MQ=60)
CTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTT > SRR4302544.3584942/1‑94 (MQ=60)
CTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTT > SRR4302544.1606733/1‑94 (MQ=60)
CTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATACAACCTT > SRR4302544.1683700/1‑94 (MQ=60)
AATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCA > SRR4302544.2681047/1‑94 (MQ=60)
AATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCA > SRR4302544.2265378/1‑94 (MQ=60)
ATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCAT > SRR4302544.3300529/1‑94 (MQ=60)
ATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCAT > SRR4302544.779671/1‑94 (MQ=60)
ATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCAT < SRR4302544.199670/94‑1 (MQ=60)
ATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCAT < SRR4302544.3761073/94‑1 (MQ=60)
TAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATG > SRR4302544.2435137/1‑94 (MQ=60)
AGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGA < SRR4302544.4711550/94‑1 (MQ=60)
CAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAAC < SRR4302544.1474001/94‑1 (MQ=60)
AGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACA > SRR4302544.2049417/1‑94 (MQ=60)
ATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC > SRR4302544.3785228/1‑94 (MQ=60)
ATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC < SRR4302544.3309265/94‑1 (MQ=60)
TGTGGAAATAAACACATGAAAAACGCCTGCTAAAGATCGTCGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCACGAACAACG < SRR4302544.684039/94‑1 (MQ=60)
TGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCACGAACAACG < SRR4302544.684040/94‑1 (MQ=60)
AGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAT < SRR4302544.3373747/94‑1 (MQ=60)
AATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCT > SRR4302544.2472671/1‑94 (MQ=60)
AAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGT < SRR4302544.751638/94‑1 (MQ=60)
AAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGC > SRR4302544.556347/1‑94 (MQ=60)
AAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGC > SRR4302544.1963223/1‑94 (MQ=60)
AACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTCACTTTACCACTCCAACCTTCATGAACAACGATAGCTAGTGCA > SRR4302544.3124631/1‑94 (MQ=60)
AACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCA > SRR4302544.3564657/1‑94 (MQ=60)
AACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCA > SRR4302544.585669/1‑94 (MQ=60)
AACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCA > SRR4302544.3124630/1‑94 (MQ=60)
ACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAA > SRR4302544.2905799/1‑94 (MQ=60)
ATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGCTAGCGTAACTTTACCAATCCAACCTTCATGAAACACGATAGCTAGTGCGATA > SRR4302544.287921/1‑94 (MQ=60)
ATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATA < SRR4302544.2991443/94‑1 (MQ=60)
GAAAACCGCCTGCTAAAGATCGACGCACATTATGTCATGATAGCGTAACTTTACCCATCCAACCTTCATGAACAACGAGAGCTAGTGCAATAAT > SRR4302544.2674902/1‑94 (MQ=60)
GAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAAT > SRR4302544.2674901/1‑94 (MQ=60)
GAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAAT < SRR4302544.189297/94‑1 (MQ=60)
CCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAG < SRR4302544.122614/94‑1 (MQ=60)
CGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGC > SRR4302544.474131/1‑94 (MQ=60)
GCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCA > SRR4302544.3879958/1‑94 (MQ=60)
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CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCA > NC_000913/2106868‑2107052
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
