Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,164,290 |
T→C |
Y201H (TAC→CAC) |
yegQ → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,164,290 | 0 | T | C | 100.0%
| 387.1
/ NA
| 121 | Y201H (TAC→CAC) | yegQ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (63/58); total (63/58) |
Only 100 of 126 total aligned reads displayed.
GGCCTACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGTACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGACGCTG > NC_000913/2164202‑2164379
|
ggCCTACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACaa > 2:3630577/1‑93 (MQ=255)
gCCTACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAAc < 1:1827807/93‑1 (MQ=255)
cTACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACgc > 2:1060621/1‑92 (MQ=255)
cTACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACgc > 1:807852/1‑92 (MQ=255)
cTACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGt > 1:804117/1‑93 (MQ=255)
tACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTc < 2:3908332/93‑1 (MQ=255)
aCTCCGGCCGCTGCCTGCTCTTTGGCTATATCAACAAGCGGGACCCGAACCAGGGCACCTGCCCCAACGCCTGCCGCTGGGAGCCCAACGTcc < 2:1564698/93‑1 (MQ=255)
cTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCa > 1:1038916/1‑93 (MQ=255)
ccGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAgg > 1:1821224/1‑93 (MQ=255)
ccGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAgg < 1:2510941/93‑1 (MQ=255)
cGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGa < 1:2467309/93‑1 (MQ=255)
ggTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGaa < 2:4265296/93‑1 (MQ=255)
cgTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGaa < 1:1544307/92‑1 (MQ=255)
gTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGCAg > 1:2544592/1‑93 (MQ=255)
gTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAg > 2:2697822/1‑93 (MQ=255)
gTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGACTGCCGCTGGGAGCACAACGAACAGGAAg > 2:458241/1‑93 (MQ=255)
cGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAggg < 2:1693169/93‑1 (MQ=255)
gCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGa > 2:2938707/1‑93 (MQ=255)
gCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGa > 1:3739710/1‑93 (MQ=255)
tgcctgcTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGaaa > 1:1884765/1‑93 (MQ=255)
gcctgcTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAaag > 2:1223036/1‑93 (MQ=255)
cctgcTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAaaga < 1:1177697/93‑1 (MQ=255)
ctgcTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAaagaa < 2:1405391/93‑1 (MQ=255)
gcTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTACAGGAAGGGAAagaaga > 1:2156444/1‑93 (MQ=255)
ctctctGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAgat < 2:1060210/93‑1 (MQ=255)
ctctctGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAgat < 1:3950707/93‑1 (MQ=255)
tctctGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAgatg < 2:2393729/93‑1 (MQ=255)
tctctGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAgatg < 2:1107351/93‑1 (MQ=255)
tctctGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAgatg < 2:757592/93‑1 (MQ=255)
tctctGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAgatg > 2:4690818/1‑93 (MQ=255)
ctctGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCACCGCCTGCCGCTGGGAGCACAACGTCCAGAAAGGGAAAGAAgatga > 1:1528956/1‑93 (MQ=255)
ctctGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAgatga > 2:3303248/1‑93 (MQ=255)
tctGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAgatgat < 1:3860631/93‑1 (MQ=255)
tctGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAgatgat > 2:1317400/1‑93 (MQ=255)
tctGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAgatgat < 2:3235688/93‑1 (MQ=255)
tGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGt < 2:109374/93‑1 (MQ=255)
tGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGt > 1:3911521/1‑93 (MQ=255)
tGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGt > 2:1417703/1‑93 (MQ=255)
tGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGt > 1:1841649/1‑93 (MQ=255)
tGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGt < 2:275153/93‑1 (MQ=255)
ggCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGtt < 2:2517033/93‑1 (MQ=255)
cTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGACAGAAGATGATGTTgg > 1:4504211/1‑93 (MQ=255)
atCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAAc < 1:4657139/93‑1 (MQ=255)
tCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATTATGTTGGCAACa > 1:91362/1‑93 (MQ=255)
caaGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGt > 1:1091951/1‑93 (MQ=255)
aaGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGtt < 2:4287519/93‑2 (MQ=255)
aaGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTa > 2:1358615/1‑93 (MQ=255)
aaGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTa > 1:4048943/1‑93 (MQ=255)
cgcgACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTacac < 1:1507121/93‑1 (MQ=255)
cgACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACaa > 2:3734411/1‑93 (MQ=255)
cgACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACaa > 1:2097243/1‑93 (MQ=255)
gACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAg < 1:622406/93‑1 (MQ=255)
gACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAg < 1:2581138/93‑1 (MQ=255)
gACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAg > 2:2317387/1‑93 (MQ=255)
gACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAg > 1:2250984/1‑93 (MQ=255)
caCCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAg < 1:2522161/92‑1 (MQ=255)
aCCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGt < 2:3135350/93‑1 (MQ=255)
aCCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGt > 1:2975899/1‑93 (MQ=255)
aCCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGt > 2:14907/1‑93 (MQ=255)
cccGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAgaa > 1:378513/1‑91 (MQ=255)
cccGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTa > 1:3752680/1‑93 (MQ=255)
cccGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTa < 1:4131926/93‑1 (MQ=255)
cccGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTa < 2:1116799/93‑1 (MQ=255)
ccGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTAc > 2:3931458/1‑93 (MQ=255)
cGAACCAGGGCCCCTGCACCAACGCCTGCCGCTGGGCGCACAACGTCCAGGAAGGGAAAGAAGATGATGTCGGCAACCTCGTACACAAGTACg > 2:3648642/1‑93 (MQ=255)
gAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGa > 1:1519953/1‑93 (MQ=255)
gAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGa > 2:3966334/1‑93 (MQ=255)
gAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGa > 2:3557758/1‑93 (MQ=255)
aCCAGGGCACCTGCACCAACGCCTGCCGCTGGGGGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGc < 1:1314080/93‑1 (MQ=255)
aCCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGc > 2:2255077/1‑93 (MQ=255)
aCCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGc > 2:2721251/1‑93 (MQ=255)
cAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCg > 2:1264679/1‑93 (MQ=255)
cAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGGACGAGTCg > 1:2256709/1‑93 (MQ=255)
gggCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGAt > 2:764462/1‑93 (MQ=255)
gggCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGAt < 2:3146002/93‑1 (MQ=255)
ggCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACCAAAGAACGAGCCGAtc > 2:21336/1‑92 (MQ=255)
cccTGCACCACCGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCg < 1:389367/92‑1 (MQ=255)
aCCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCg > 1:391573/1‑93 (MQ=255)
ccTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCgg < 2:3303446/93‑1 (MQ=255)
cTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGt > 2:4164205/1‑93 (MQ=255)
tGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTg > 2:1162336/1‑93 (MQ=255)
tGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTg > 2:1162335/1‑93 (MQ=255)
cACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCa > 2:677239/1‑93 (MQ=255)
ccAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCaaa > 2:344631/1‑93 (MQ=255)
ccAACGACTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCaaa > 2:1804655/1‑93 (MQ=255)
cAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCaaaa > 2:4427197/1‑93 (MQ=255)
cAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCaaaa > 2:59700/1‑93 (MQ=255)
cAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCaaaa < 1:4702642/93‑1 (MQ=255)
aCGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATg > 2:212787/1‑93 (MQ=255)
cTGCGGCTGGGAGCACAACGGCCAGAAAGGGAAAGAAGATGATTTTGGCAACACCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGa < 2:1186543/93‑1 (MQ=255)
cTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGa > 2:154691/1‑93 (MQ=255)
cTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGa < 1:4296269/93‑1 (MQ=255)
gCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGc < 2:2758141/93‑1 (MQ=255)
gCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGc < 2:2562708/93‑1 (MQ=255)
ccGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGcc < 2:840202/93‑1 (MQ=255)
gCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGa < 2:1359129/93‑1 (MQ=255)
gggAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGACGc < 2:3610359/93‑1 (MQ=255)
gggAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGACGc < 1:3509196/93‑1 (MQ=255)
ggAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGACGCt < 1:2563228/93‑1 (MQ=255)
gAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGACGCTg > 1:4630479/1‑93 (MQ=255)
|
GGCCTACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGTACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGACGCTG > NC_000913/2164202‑2164379
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CATGGCCTACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGTACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGACGCTGGGTA > NC_000913/2164199‑2164383
|
CATGGCCTACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCAC < SRR4302544.3798528/94‑1 (MQ=60)
GCCTACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACG < SRR4302544.1845592/94‑1 (MQ=60)
CCTACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGT > SRR4302544.811952/1‑94 (MQ=60)
CCTACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGC > SRR4302544.815731/1‑94 (MQ=60)
ACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCA > SRR4302544.1049238/1‑94 (MQ=60)
ACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCA < SRR4302544.138907/94‑1 (MQ=60)
TCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGG > SRR4302544.1838982/1‑94 (MQ=60)
CCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGA < SRR4302544.2535040/94‑1 (MQ=60)
CGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAA < SRR4302544.2490878/94‑1 (MQ=60)
GGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGCAG > SRR4302544.2569023/1‑94 (MQ=60)
CGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAG < SRR4302544.1559683/94‑1 (MQ=60)
TCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGG > SRR4302544.3972830/1‑94 (MQ=60)
CGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGA > SRR4302544.3776878/1‑94 (MQ=60)
CTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAA > SRR4302544.1902985/1‑94 (MQ=60)
CCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAA < SRR4302544.1189434/94‑1 (MQ=60)
TGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTACAGGAAGGGAAAGAAGA > SRR4302544.2176940/1‑94 (MQ=60)
gcttgctgcCTATATCAACAAGCGCAGCCCGACCCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGAT < SRR4302544.3593922/85‑1 (MQ=60)
CTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATG < SRR4302544.3989969/94‑1 (MQ=60)
TCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCACCGCCTGCCGCTGGGAGCACAACGTCCAGAAAGGGAAAGAAGATGA > SRR4302544.1544142/1‑94 (MQ=60)
TCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATG < SRR4302544.3898959/94‑1 (MQ=60)
CTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGT > SRR4302544.3950379/1‑94 (MQ=60)
CTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGT > SRR4302544.1859507/1‑94 (MQ=60)
GCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGACAGAAGATGATGTTGG > SRR4302544.4549386/1‑94 (MQ=60)
ATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATTATGTTGGCAACA > SRR4302544.92217/1‑94 (MQ=60)
ATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACA < SRR4302544.4703219/94‑1 (MQ=60)
ACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGT > SRR4302544.1102815/1‑94 (MQ=60)
CAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTA > SRR4302544.4089271/1‑94 (MQ=60)
CGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACA < SRR4302544.1522060/94‑1 (MQ=60)
GCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAA > SRR4302544.2117424/1‑94 (MQ=60)
CGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAG < SRR4302544.258674/94‑1 (MQ=60)
CGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAG > SRR4302544.2272140/1‑94 (MQ=60)
GACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGT < SRR4302544.2605944/94‑1 (MQ=60)
GACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGT < SRR4302544.628514/94‑1 (MQ=60)
GACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGT > SRR4302544.3004445/1‑94 (MQ=60)
CACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGT < SRR4302544.2546392/94‑1 (MQ=60)
ACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTA > SRR4302544.3789946/1‑94 (MQ=60)
ACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGAA > SRR4302544.382367/1‑94 (MQ=60)
CCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTAC < SRR4302544.4172877/94‑1 (MQ=60)
CCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTAC < SRR4302544.3653039/94‑1 (MQ=60)
CGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGA > SRR4302544.1535039/1‑94 (MQ=60)
GAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAG < SRR4302544.1681051/94‑1 (MQ=60)
ACCAGGGCACCTGCACCAACGCCTGCCGCTGGGGGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCC < SRR4302544.1326999/94‑1 (MQ=60)
CCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGGACGAGTCG > SRR4302544.2277943/1‑94 (MQ=60)
AGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGAT < SRR4302544.3832167/94‑1 (MQ=60)
AGGGCACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGAT > SRR4302544.4787694/1‑94 (MQ=60)
CACCTGCACCAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCG > SRR4302544.395545/1‑94 (MQ=60)
CCCTGCACCACCGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGG < SRR4302544.393321/94‑1 (MQ=60)
CAACGCCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAAT < SRR4302544.4749118/94‑1 (MQ=60)
ccgTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTG < SRR4302544.4499635/91‑1 (MQ=60)
CCTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGA > SRR4302544.2058770/1‑94 (MQ=60)
CTGCCGCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAG < SRR4302544.4340119/94‑1 (MQ=60)
GCTGGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGAC > SRR4302544.230385/1‑94 (MQ=60)
GGGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGACGCT < SRR4302544.3542676/94‑1 (MQ=60)
GGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGACGCTG > SRR4302544.4676378/1‑94 (MQ=60)
GGAGCACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGACGCTG < SRR4302544.2587856/94‑1 (MQ=60)
CACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGACGCTGGGTA > SRR4302544.1701340/1‑94 (MQ=60)
CACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGACGCTGGGTA > SRR4302544.4352856/1‑94 (MQ=60)
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CATGGCCTACTCCGGTCGCTGCCTGCTCTCTGGCTATATCAACAAGCGCGACCCGAACCAGGGCACCTGCACCAACGCCTGCCGCTGGGAGTACAACGTCCAGGAAGGGAAAGAAGATGATGTTGGCAACATCGTACACAAGTACGAGCCGATTCCGGTGCAAAATGTTGAGCCGACGCTGGGTA > NC_000913/2164199‑2164383
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
