Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,207,023 |
A→G |
D346G (GAC→GGC) |
yehP → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,207,023 | 0 | A | G | 99.1%
| 348.0
/ ‑4.7
| 110 | D346G (GAC→GGC) | yehP | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (53/56); total (54/56) |
| Fisher's exact test for biased strand distribution p-value = 4.91e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.66e-01 |
Only 100 of 114 total aligned reads displayed.
TACTGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGACCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTGCGGAGAATC > NC_000913/2206933‑2207112
|
tACTGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGcc > 1:3825052/1‑93 (MQ=255)
tACTGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGcc > 2:3582349/1‑93 (MQ=255)
aCTGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCcg > 1:997937/1‑93 (MQ=255)
cTGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCcgc > 2:3487161/1‑93 (MQ=255)
tGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCcgcg > 1:3981863/1‑93 (MQ=255)
tGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCcgcg > 1:4408699/1‑93 (MQ=255)
tGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGAGCTCGATAGCACCGCAACACCTTGCTATGGCcgcg > 1:3981864/1‑93 (MQ=255)
gACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGa < 1:2127245/93‑1 (MQ=255)
gACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGa > 2:1731748/1‑93 (MQ=255)
cGCATCAGGTGAAAAAGTGTGTCCAGAGCGGGATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATa < 1:3537732/93‑1 (MQ=255)
cGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATa < 1:6311/93‑1 (MQ=255)
gCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACTGCAACACCTTGCTATGGCCGCGATAc > 1:4323607/1‑93 (MQ=255)
gCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATAc > 2:3206037/1‑93 (MQ=255)
gCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATAc < 1:849150/93‑1 (MQ=255)
gCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATAc < 2:530194/93‑1 (MQ=255)
gCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGAGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATAc < 1:1334907/93‑1 (MQ=255)
cATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACg > 1:190002/1‑93 (MQ=255)
aTCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACgg > 1:3583719/1‑93 (MQ=255)
tCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGc > 2:2419908/1‑93 (MQ=255)
aGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGccc < 1:1982417/93‑1 (MQ=255)
aGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGccc < 1:1091818/93‑1 (MQ=255)
ggTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCa < 1:1261688/93‑1 (MQ=255)
gTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAg < 1:2216670/93‑1 (MQ=255)
gTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAg < 2:391730/93‑1 (MQ=255)
aaaaaGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGgcg > 1:387992/1‑93 (MQ=255)
aaGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTg < 2:4423565/93‑1 (MQ=255)
aaGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTg > 2:4505035/1‑93 (MQ=255)
aGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTgg < 2:915726/93‑1 (MQ=255)
aGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTgg > 2:2230427/1‑93 (MQ=255)
aGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTgg < 1:2765645/93‑1 (MQ=255)
aGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTgg > 1:3164742/1‑93 (MQ=255)
gtgtgtCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGAGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGt > 1:2221577/1‑93 (MQ=255)
gtCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAAt > 2:363424/1‑93 (MQ=255)
tCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATg > 1:1324717/1‑93 (MQ=255)
cAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTc > 1:12942/1‑93 (MQ=255)
cAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTc < 1:3478444/93‑1 (MQ=255)
agagCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCg > 2:19747/1‑93 (MQ=255)
gagCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCgg > 2:3882853/1‑93 (MQ=255)
gagCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCgg > 1:2681215/1‑93 (MQ=255)
gagCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGACCGCGATACGGCCCAGGCGCTGGTTAATGTCgg > 1:4018259/1‑93 (MQ=255)
agCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCATCCCCTTGCTATGGCCGCGATACGGCCCAGGCTCTGGTTAATGTCGgc < 2:3324430/93‑1 (MQ=255)
gCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGgcg > 2:4368553/1‑93 (MQ=255)
ggCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGca > 2:2133178/1‑93 (MQ=255)
gCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGcac > 2:4243815/1‑93 (MQ=255)
cATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGcaca < 2:2340478/93‑1 (MQ=255)
aTCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTGCGCGCACaa > 2:3462301/1‑93 (MQ=255)
cAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAAt < 1:3453486/93‑1 (MQ=255)
aaaGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAAtc < 2:2881275/93‑2 (MQ=255)
aaaGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATa > 1:3220227/1‑93 (MQ=255)
aGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAgc < 2:1941438/93‑1 (MQ=255)
aGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAgc < 2:3041473/93‑1 (MQ=255)
gCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAgccgc < 1:3864219/93‑1 (MQ=255)
tGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCa > 2:2136305/1‑93 (MQ=255)
tGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCa > 2:3265504/1‑93 (MQ=255)
tGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCa < 1:4434631/93‑1 (MQ=255)
gggACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCAt > 2:2479947/1‑93 (MQ=255)
ggACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATg < 2:4542368/93‑1 (MQ=255)
gACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGa < 2:663482/93‑1 (MQ=255)
aCTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGAc > 2:2574551/1‑93 (MQ=255)
cTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGAcc > 2:1070674/1‑92 (MQ=255)
tGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGc < 2:1298494/93‑1 (MQ=255)
tGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGc > 1:761319/1‑93 (MQ=255)
tGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGc < 2:2814589/93‑1 (MQ=255)
tGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGc < 2:787716/93‑1 (MQ=255)
tGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGc > 2:3805992/1‑93 (MQ=255)
ggCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGcc > 2:3336900/1‑93 (MQ=255)
cAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCgg < 2:4357884/93‑1 (MQ=255)
cAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCgg < 1:3279490/93‑1 (MQ=255)
gcgcTCGATAGCACCGCAACCCCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGc < 2:2288430/93‑1 (MQ=255)
gcTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGa < 2:2214137/93‑1 (MQ=255)
gcTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGa < 1:2084754/93‑1 (MQ=255)
cTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAg > 1:4553198/1‑93 (MQ=255)
cTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAg > 1:4553199/1‑93 (MQ=255)
cTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAg < 2:3267233/93‑1 (MQ=255)
tCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGc > 1:364159/1‑93 (MQ=255)
tCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGc > 1:3318604/1‑93 (MQ=255)
tCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGc < 1:3275059/93‑1 (MQ=255)
cGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCt < 1:1319953/93‑1 (MQ=255)
gATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTg < 2:4535901/93‑1 (MQ=255)
cACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGcatc > 2:3098723/1‑93 (MQ=255)
cACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGcatc > 2:4187180/1‑93 (MQ=255)
aCCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGcatca < 1:3654919/93‑1 (MQ=255)
aCCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGcatca < 1:190001/93‑1 (MQ=255)
aCCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGcatca < 1:429848/93‑1 (MQ=255)
ccGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGcatcat < 2:2747779/93‑1 (MQ=255)
ccGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGcatcat < 1:4375504/93‑1 (MQ=255)
ccGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGcatcat < 1:4503394/93‑1 (MQ=255)
ccGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGcatcat < 1:2954237/93‑1 (MQ=255)
gCAACACCTTCCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATgg < 1:2821987/93‑1 (MQ=255)
cAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGc < 2:3718156/93‑1 (MQ=255)
aaCACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCt > 1:1608341/1‑93 (MQ=255)
aaCACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCt < 2:1695770/93‑1 (MQ=255)
acacCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCtt > 1:1501696/1‑93 (MQ=255)
acacCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCtt > 1:473887/1‑93 (MQ=255)
acCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCtttt > 1:3374722/1‑91 (MQ=255)
ccTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTTCg > 1:906885/1‑93 (MQ=255)
cTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTGCgg < 1:2965312/93‑1 (MQ=255)
ttGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTGCGga < 1:4301867/93‑1 (MQ=255)
cTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTGCGGAGaa < 1:3847644/93‑1 (MQ=255)
aTGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTGCGGAGAATc < 2:3780698/93‑1 (MQ=255)
|
TACTGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGACCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTGCGGAGAATC > NC_000913/2206933‑2207112
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CATTACTGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGACCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTGCGGAGAATCTTCA > NC_000913/2206930‑2207116
|
CATTACTGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGG > SRR4302544.3463240/1‑94 (MQ=60)
TTACTGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCC > SRR4302544.3862983/1‑94 (MQ=60)
TACTGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCG > SRR4302544.1007814/1‑94 (MQ=60)
CTGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCG > SRR4302544.4021493/1‑94 (MQ=60)
CTGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCG > SRR4302544.4453220/1‑94 (MQ=60)
CTGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGAGCTCGATAGCACCGCAACACCTTGCTATGGCCGCG > SRR4302544.4021494/1‑94 (MQ=60)
GACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGAT < SRR4302544.2147640/94‑1 (MQ=60)
CGCATCAGGTGAAAAAGTGTGTCCAGAGCGGGATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATAC < SRR4302544.3571576/94‑1 (MQ=60)
CGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACTGCAACACCTTGCTATGGCCGCGATAC > SRR4302544.4367641/1‑94 (MQ=60)
CGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATAC < SRR4302544.6371/94‑1 (MQ=60)
GCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACG < SRR4302544.857544/94‑1 (MQ=60)
GCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACG > SRR4302544.191900/1‑94 (MQ=60)
GCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGAGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACG < SRR4302544.1348063/94‑1 (MQ=60)
CATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGG > SRR4302544.3618110/1‑94 (MQ=60)
AGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCA < SRR4302544.1102680/94‑1 (MQ=60)
AGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCA < SRR4302544.2001671/94‑1 (MQ=60)
GGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAG < SRR4302544.1274104/94‑1 (MQ=60)
GTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGG < SRR4302544.2237520/94‑1 (MQ=60)
GAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCG > SRR4302544.391936/1‑94 (MQ=60)
AAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGG > SRR4302544.3194850/1‑94 (MQ=60)
AGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGT < SRR4302544.2792244/94‑1 (MQ=60)
AGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGAGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGT > SRR4302544.2242474/1‑94 (MQ=60)
TGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTA < SRR4302544.4448865/94‑1 (MQ=60)
GTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATG > SRR4302544.1337743/1‑94 (MQ=60)
CCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTC > SRR4302544.2651786/1‑94 (MQ=60)
CCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTC < SRR4302544.4019019/94‑1 (MQ=60)
CCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTC > SRR4302544.13064/1‑94 (MQ=60)
CAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCG < SRR4302544.3511614/94‑1 (MQ=60)
AGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGG > SRR4302544.2706909/1‑94 (MQ=60)
AGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGACCGCGATACGGCCCAGGCGCTGGTTAATGTCGG > SRR4302544.4058232/1‑94 (MQ=60)
CAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATA > SRR4302544.3250955/1‑94 (MQ=60)
CAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATA < SRR4302544.3486456/94‑1 (MQ=60)
CAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATA > SRR4302544.3250954/1‑94 (MQ=60)
GCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCC < SRR4302544.3902584/94‑1 (MQ=60)
TGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCAT < SRR4302544.4479365/94‑1 (MQ=60)
CTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGC > SRR4302544.768742/1‑94 (MQ=60)
GCAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGG < SRR4302544.679865/94‑1 (MQ=60)
CAGCGCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGG < SRR4302544.3310741/94‑1 (MQ=60)
GCTCGATAGCACCGCATCACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAG < SRR4302544.3742258/94‑1 (MQ=60)
GCTCGATAGCACCGCAACACCTTGCTATGGCGGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAG < SRR4302544.3742260/94‑1 (MQ=60)
GCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAG > SRR4302544.4598649/1‑94 (MQ=60)
GCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAG > SRR4302544.4598648/1‑94 (MQ=60)
GCTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAG < SRR4302544.2104805/94‑1 (MQ=60)
CTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGC > SRR4302544.3350218/1‑94 (MQ=60)
CTCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGC > SRR4302544.367882/1‑94 (MQ=60)
TCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCT < SRR4302544.3306280/94‑1 (MQ=60)
TCGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCCCACAAATAGCCTCCATGACGCCGGGCGAGCT < SRR4302544.1125291/94‑1 (MQ=60)
CGATAGCACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTG < SRR4302544.1332932/94‑1 (MQ=60)
ACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCAT < SRR4302544.3691391/94‑1 (MQ=60)
ACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCAT < SRR4302544.191899/94‑1 (MQ=60)
ACCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCAT < SRR4302544.434207/94‑1 (MQ=60)
CCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATG < SRR4302544.4548566/94‑1 (MQ=60)
CCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATG < SRR4302544.2982612/94‑1 (MQ=60)
CCGCAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATG < SRR4302544.4419860/94‑1 (MQ=60)
GCAACACCTTCCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGC < SRR4302544.2849248/94‑1 (MQ=60)
CAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCT > SRR4302544.1735662/1‑94 (MQ=60)
CAACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCT > SRR4302544.1624196/1‑94 (MQ=60)
AACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTT > SRR4302544.478519/1‑94 (MQ=60)
AACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTT > SRR4302544.1516553/1‑94 (MQ=60)
AACACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTT < SRR4302544.3598675/94‑1 (MQ=60)
CACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTtt > SRR4302544.3406941/1‑92 (MQ=60)
CACCTTGCTATGACCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCCTGACGCCGGGCGAGCTGGCCTCATGGCTTGT > SRR4302544.2936266/1‑94 (MQ=60)
ACCTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTTCG > SRR4302544.915853/1‑94 (MQ=60)
CTTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTGCGGA < SRR4302544.2993763/94‑1 (MQ=60)
TTGCTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTGCGGAG < SRR4302544.4345752/94‑1 (MQ=60)
CTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTttgggggat > SRR4302544.4229247/1‑85 (MQ=60)
CTATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTGCGGAGAAT < SRR4302544.3885827/94‑1 (MQ=60)
ATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTTTGGAGAATAT > SRR4302544.2953035/1‑94 (MQ=60)
ATGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTGCGGGGGATCT > SRR4302544.4442266/1‑94 (MQ=60)
TGGCCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTTCGGAGGATCTT > SRR4302544.3668247/1‑94 (MQ=60)
GCCGCGATACGGCCCAGGCGCTGGTTAATGACGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCAgcacggcgtgcgggggaacttca > SRR4302544.4257010/1‑71 (MQ=60)
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CATTACTGACGCATCAGGTGAAAAAGTGTGTCCAGAGCGGCATCAAAGTGCTGGGACTGGCAGCGCTCGATAGCACCGCAACACCTTGCTATGACCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACGCCGGGCGAGCTGGCATCATGGCTTGCGGAGAATCTTCA > NC_000913/2206930‑2207116
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
