Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,247,350 |
T→C |
S97G (AGT→GGT) |
yeiE ← |
putative transcriptional regulator LYSR‑type |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,247,350 | 0 | T | C | 98.2%
| 337.0
/ ‑4.0
| 108 | S97G (AGT→GGT) | yeiE | putative transcriptional regulator LYSR‑type |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (43/63); total (44/64) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 |
Only 100 of 121 total aligned reads displayed.
TATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACTACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGAT > NC_000913/2247260‑2247439
|
tATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGtaccac > 2:4009779/1‑93 (MQ=255)
tATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGtaccac > 1:4712853/1‑93 (MQ=255)
tATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGtaccac > 1:4398593/1‑93 (MQ=255)
tATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGtaccac > 1:3463663/1‑93 (MQ=255)
aTTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTaccact < 1:1355727/93‑1 (MQ=255)
ttCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTg < 2:4142997/93‑1 (MQ=255)
aaCGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATa > 2:2129347/1‑93 (MQ=255)
aCGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAg > 1:2781756/1‑93 (MQ=255)
aCGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAg > 1:2696325/1‑93 (MQ=255)
cGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGa < 2:639006/93‑1 (MQ=255)
cTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACTACTGGCATAGCTa > 2:2491740/1‑93 (MQ=255)
cTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATa < 2:1558174/93‑1 (MQ=255)
cTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATa < 1:4683224/93‑1 (MQ=255)
tAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATAc > 2:2576474/1‑93 (MQ=255)
tAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATAc > 1:1898016/1‑93 (MQ=255)
aaGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACg < 2:1947183/93‑1 (MQ=255)
aaGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACg > 1:1763013/1‑93 (MQ=255)
aGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGa < 2:728517/93‑1 (MQ=255)
gTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGaa > 2:2773226/1‑93 (MQ=255)
gTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGaa < 2:4501432/93‑1 (MQ=255)
ttCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAAt > 1:2672547/1‑93 (MQ=255)
ttCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAAt < 1:3382966/93‑1 (MQ=255)
tCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATc < 2:1195114/93‑1 (MQ=255)
aaTCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATcgc > 2:363707/1‑93 (MQ=255)
aTCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATcgcg > 2:2861144/1‑93 (MQ=255)
aTCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATcgcc > 1:2119500/1‑92 (MQ=255)
aTCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATcgcc > 1:459816/1‑92 (MQ=255)
tCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCgcgc > 2:3260181/1‑93 (MQ=255)
cGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGcc < 1:586637/93‑1 (MQ=255)
ggCAACTGCGGATAATCATGGCGATAACGGGCGATACCTGCAGGCAGAATGTATTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCg < 2:1073276/93‑1 (MQ=255)
ggCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCg > 2:3965438/1‑93 (MQ=255)
gCAACTGCGGATAATCATTGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACAAATCGCTCCGt > 2:3335344/1‑93 (MQ=255)
gCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGt > 1:874019/1‑93 (MQ=255)
cAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGtt < 1:2976103/93‑1 (MQ=255)
aCTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGt > 2:596031/1‑93 (MQ=255)
aCTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGt > 1:2245269/1‑93 (MQ=255)
aCTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTGACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGt < 1:3247781/93‑1 (MQ=255)
cTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTc < 1:2602872/93‑1 (MQ=255)
tGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTATTTACCGATGGTACCACGGGCATAGATACGAATCGCGCCGTTGTCt < 2:1417965/93‑1 (MQ=255)
tGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCt < 2:107344/93‑1 (MQ=255)
tGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCt < 2:322131/93‑1 (MQ=255)
gcagATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGAACCACTGGCATAGATACGAATCGCGCCGTTGTCtt < 2:2078043/90‑1 (MQ=255)
gCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCtt < 1:90176/93‑1 (MQ=255)
gCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCtt < 2:1239620/93‑1 (MQ=255)
gCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCtt < 2:2078042/93‑1 (MQ=255)
cGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTc < 1:681762/93‑1 (MQ=255)
cGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTc < 1:128107/93‑1 (MQ=255)
ggATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTcg < 2:3366666/93‑1 (MQ=255)
gATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTcgc < 1:124337/93‑1 (MQ=255)
aTCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGcaa > 1:1547187/1‑93 (MQ=255)
aTCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGaaa < 2:3583070/93‑1 (MQ=255)
cATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACa < 1:127121/93‑1 (MQ=255)
cATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACa > 2:1465413/1‑93 (MQ=255)
aTGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAg < 2:1261279/93‑1 (MQ=255)
aTGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAg > 2:5819/1‑93 (MQ=255)
tGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTTCCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgt < 2:1823734/93‑1 (MQ=255)
tGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgt < 2:3419286/93‑1 (MQ=255)
tGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgt < 2:3737999/93‑1 (MQ=255)
cGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGCAACAgctgt > 2:3794820/1‑93 (MQ=255)
cGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgttgt < 2:763607/93‑1 (MQ=255)
cGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgttgt < 2:2320780/93‑1 (MQ=255)
gATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCGCTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgttgtt < 2:2812072/93‑1 (MQ=255)
gATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgttgtt < 2:2954986/93‑1 (MQ=255)
gATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgttgtt > 2:1976455/1‑93 (MQ=255)
aTAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTc > 2:158809/1‑93 (MQ=255)
aTAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCACCGTTTTCTTCGCCAAACAGTTGTTc > 2:3538144/1‑93 (MQ=255)
tAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCg > 2:4685773/1‑93 (MQ=255)
aaCGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGa > 2:2208653/1‑93 (MQ=255)
ggCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTc < 2:1946251/93‑1 (MQ=255)
gCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCa < 2:905566/93‑1 (MQ=255)
cGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCaa > 1:125796/1‑93 (MQ=255)
cGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCaa > 1:1377999/1‑93 (MQ=255)
gATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAAc < 1:1431320/93‑1 (MQ=255)
gATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAAc < 1:2422834/93‑1 (MQ=255)
aTAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAAcc > 2:1366378/1‑93 (MQ=255)
aTAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAAcc > 1:2758676/1‑93 (MQ=255)
aCTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGcc < 2:3165171/93‑1 (MQ=255)
aCTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGcc < 2:1610947/93‑1 (MQ=255)
cTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCt > 2:2842948/1‑93 (MQ=255)
cTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCt < 1:969917/93‑1 (MQ=255)
cTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCt < 1:889832/93‑1 (MQ=255)
tGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTg > 1:457086/1‑93 (MQ=255)
caggcagAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGtt < 2:4010504/93‑1 (MQ=255)
ggcagAATGTAGTTTCCGATGGTACCACTGGCATAGATCCGAATCGCGCCGTTGTCTTCGCCAAACAGTTGTTCGATTTCAACCGCCTGTTCa < 2:2291502/93‑1 (MQ=255)
agAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGc < 1:1592578/93‑1 (MQ=255)
aaTGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCaa > 1:119024/1‑93 (MQ=255)
aaTGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCaa > 2:187749/1‑93 (MQ=255)
aTGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGGAAt > 2:2378492/1‑93 (MQ=255)
tGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATg > 1:4611992/1‑93 (MQ=255)
tGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATg > 2:2608384/1‑93 (MQ=255)
gTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGc > 2:2536982/1‑93 (MQ=255)
tAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGcc < 2:3673671/93‑1 (MQ=255)
gTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCaa < 2:724192/93‑1 (MQ=255)
gTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCaa < 2:3066779/93‑1 (MQ=255)
tccGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAacgc < 2:2029053/92‑1 (MQ=255)
aCCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAacgc < 2:3276999/93‑1 (MQ=255)
aTGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAacgcacgc < 2:1045532/93‑1 (MQ=255)
aTGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCAAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAacgcacgc < 2:2710838/93‑1 (MQ=255)
gTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGa < 2:411814/93‑1 (MQ=255)
taccacTGACTTAGATACGAATCGCACCGTTGTCTTCGCGAAACATTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGAt < 2:2606910/93‑1 (MQ=255)
|
TATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACTACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGAT > NC_000913/2247260‑2247439
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCTATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACTACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGATAGAG > NC_000913/2247257‑2247443
|
GGCTATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACC < SRR4302544.3867120/94‑1 (MQ=60)
GGCTATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACC < SRR4302544.4796076/94‑1 (MQ=60)
GCTATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCA < SRR4302544.1579167/94‑1 (MQ=60)
GCTATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAAGGTAGTTACCGATGGTACCA < SRR4302544.4528352/94‑1 (MQ=60)
CTATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCAC > SRR4302544.3496709/1‑94 (MQ=60)
CTATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCAC > SRR4302544.4443056/1‑94 (MQ=60)
CTATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCAC > SRR4302544.4759409/1‑94 (MQ=60)
ATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTG < SRR4302544.1369174/94‑1 (MQ=60)
ATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTG < SRR4302544.4738317/94‑1 (MQ=60)
CCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCAT > SRR4302544.2824356/1‑94 (MQ=60)
CCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCAT < SRR4302544.134136/94‑1 (MQ=60)
AACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAG > SRR4302544.2808531/1‑94 (MQ=60)
AACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAG > SRR4302544.2722214/1‑94 (MQ=60)
CTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATAC < SRR4302544.4729518/94‑1 (MQ=60)
CTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATAC > SRR4302544.1916358/1‑94 (MQ=60)
TAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACG > SRR4302544.1780258/1‑94 (MQ=60)
GTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAAT > SRR4302544.2698166/1‑94 (MQ=60)
TTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATC < SRR4302544.3415279/94‑1 (MQ=60)
AATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCC > SRR4302544.464337/1‑94 (MQ=60)
AATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCC > SRR4302544.2139848/1‑94 (MQ=60)
CGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCG < SRR4302544.592390/94‑1 (MQ=60)
GGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGT > SRR4302544.882690/1‑94 (MQ=60)
CAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTG < SRR4302544.3004651/94‑1 (MQ=60)
AACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGT > SRR4302544.2266386/1‑94 (MQ=60)
ACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTGACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTC < SRR4302544.3278866/94‑1 (MQ=60)
CTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCT < SRR4302544.2627884/94‑1 (MQ=60)
GCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTC < SRR4302544.91026/94‑1 (MQ=60)
CGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCG < SRR4302544.129287/94‑1 (MQ=60)
CGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCG < SRR4302544.688539/94‑1 (MQ=60)
GATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCG < SRR4302544.125482/94‑1 (MQ=60)
AATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGCAA > SRR4302544.1562596/1‑94 (MQ=60)
CATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAG < SRR4302544.128293/94‑1 (MQ=60)
GCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGT < SRR4302544.4341898/94‑1 (MQ=60)
CGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTT < SRR4302544.2446583/94‑1 (MQ=60)
GCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAA > SRR4302544.126955/1‑94 (MQ=60)
GCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAA > SRR4302544.1391750/1‑94 (MQ=60)
GATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACC > SRR4302544.2785222/1‑94 (MQ=60)
GATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACC < SRR4302544.1445561/94‑1 (MQ=60)
GATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACC < SRR4302544.2445904/94‑1 (MQ=60)
CTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTG > SRR4302544.461591/1‑94 (MQ=60)
CTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTG < SRR4302544.898651/94‑1 (MQ=60)
CTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTG < SRR4302544.979425/94‑1 (MQ=60)
AGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCA < SRR4302544.1608272/94‑1 (MQ=60)
AGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCA < SRR4302544.90276/94‑1 (MQ=60)
GAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAA > SRR4302544.120102/1‑94 (MQ=60)
gagGTAGTTACCGATGGTACCGCTGGAATAGATACGAAGCGGGCCGTTGTCGTCGCGAAGCAGTTGTTCGATTTCAACCGCCTGTTCAAGCAAT < SRR4302544.1395581/91‑1 (MQ=60)
ATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATG > SRR4302544.4657789/1‑94 (MQ=60)
ATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATG > SRR4302544.1738711/1‑94 (MQ=60)
CCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGATAGA < SRR4302544.236121/94‑1 (MQ=60)
CACTGGCATAGATACGACTCACGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACAACATGTTCAAGCAATGCCAACGCACGCGGATAGAG < SRR4302544.4251291/94‑1 (MQ=60)
CACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGATAGAG < SRR4302544.1325257/94‑1 (MQ=60)
CACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGATAGAG < SRR4302544.2973147/94‑1 (MQ=60)
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GGCTATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACTACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGATAGAG > NC_000913/2247257‑2247443
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
