Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,299,266 |
T→C |
N503S (AAC→AGC) |
napA ← |
putative nitrate reductase 3 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,299,266 | 0 | T | C | 100.0%
| 289.2
/ NA
| 91 | N503S (AAC→AGC) | napA | putative nitrate reductase 3 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (48/43); total (48/43) |
Only 100 of 106 total aligned reads displayed.
CCCTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGTTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTC > NC_000913/2299176‑2299355
|
cccTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTg > 2:3876675/1‑93 (MQ=255)
cccTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTg > 1:1457973/1‑93 (MQ=255)
cccTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTg > 1:1570548/1‑93 (MQ=255)
ccTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTgc < 1:2109535/93‑1 (MQ=255)
ccTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGATgc > 2:4190147/1‑93 (MQ=255)
ctctTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGGCGATGATGAAGCTgcg > 2:722423/1‑93 (MQ=255)
ctctTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTgcg > 2:3733903/1‑93 (MQ=255)
tttCTCTACCCATATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGACTGAGTCGGTTCGGAGACGAAGATGAAGCTgcgttg > 2:4223329/1‑90 (MQ=255)
tttCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGCGACGATGATGAAGTTGCCCgg > 2:3827035/1‑93 (MQ=255)
tttCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCgg > 2:272252/1‑93 (MQ=255)
tttCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCgg > 1:952335/1‑93 (MQ=255)
tttCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACCGACTGTCGGATACGGATCGGAGACGATGAAGAAGCcgcgcgc > 2:1038955/1‑92 (MQ=255)
ttCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCCGAGACGATGATGAAGCTTCGCGGa > 1:4443364/1‑93 (MQ=255)
tctcTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGAt < 2:1801633/93‑1 (MQ=255)
tctcTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGAt < 1:627140/93‑1 (MQ=255)
tctACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATcg > 2:3504588/1‑93 (MQ=255)
tctACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGATGCACGGATcg > 1:1380600/1‑93 (MQ=255)
ctACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATcgc < 1:2573197/93‑1 (MQ=255)
tACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGAACGGAGACGATGATGAAGCTGCGCGGATcgcg > 2:62948/1‑93 (MQ=255)
cacaGTGCGGTCGACAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATTGAAAAGGATGATGAAGCTGTGCGGAAGGAGCCAg < 2:2119438/93‑1 (MQ=255)
acaTTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCCGc > 1:2918704/1‑93 (MQ=255)
aTTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGccc > 1:4510935/1‑93 (MQ=255)
gCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGc < 1:3781715/93‑1 (MQ=255)
cGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCa < 1:2433539/93‑1 (MQ=255)
ggTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCAt > 1:1098622/1‑93 (MQ=255)
gTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATa > 1:2845985/1‑93 (MQ=255)
gTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATa < 1:4127834/93‑1 (MQ=255)
ggCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGc < 1:2837970/93‑1 (MQ=255)
gCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGct < 1:3266060/93‑1 (MQ=255)
aGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGctct > 2:1225002/1‑93 (MQ=255)
aGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGctct > 1:1158435/1‑93 (MQ=255)
ggATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCtt > 2:3404058/1‑93 (MQ=255)
ggATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCtt > 1:248809/1‑93 (MQ=255)
gATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTc < 2:1375930/93‑1 (MQ=255)
aTCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCa > 1:1469305/1‑93 (MQ=255)
aTCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCa < 2:2150353/93‑1 (MQ=255)
tCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTGTTCAt > 1:1503956/1‑93 (MQ=255)
tCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCAt > 1:4428331/1‑93 (MQ=255)
aaGTCGGCGGCCAGCGCACTGACTGTCGGTTACGGATCGGAGACGATGATGAAGCTGCGCGGAGCGCGACAGCACGGCATACGCTCCTCATTg > 2:159371/1‑93 (MQ=255)
aGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCACCCCGGCATACGCTCTTCATTGa > 1:3209161/1‑93 (MQ=255)
aGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCCCGCCAGCCCGGCATACGCTCTTCATTGa > 2:1326376/1‑93 (MQ=255)
gTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGAt > 1:1536035/1‑93 (MQ=255)
gTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGAt < 2:3883711/93‑1 (MQ=255)
tCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATg > 2:747183/1‑93 (MQ=255)
tCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATg < 1:4632412/93‑1 (MQ=255)
cggaggCCAGCGCACTGAGTGTCGGATACGGATCGGCGGCGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGt < 2:3628195/93‑1 (MQ=255)
cgcggcCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGtt < 1:1229806/92‑1 (MQ=255)
gcggcCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTc < 1:3019603/93‑1 (MQ=255)
ggcCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTcgg > 2:129770/1‑93 (MQ=255)
gcCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTcggc > 2:1585893/1‑93 (MQ=255)
ccAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTcggcc > 2:2875051/1‑93 (MQ=255)
aGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTcggcccg < 2:4512068/93‑1 (MQ=255)
gcgcACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTcggcccgg > 2:1290985/1‑93 (MQ=255)
gcgcACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTcggcccgg > 2:872112/1‑93 (MQ=255)
cgcACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTcggcccggc < 1:600504/93‑1 (MQ=255)
gcACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTcggcccggcc < 2:910381/93‑1 (MQ=255)
cACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCt > 1:314938/1‑93 (MQ=255)
actgactgTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTg > 1:1202785/1‑93 (MQ=255)
actgactgTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTg > 1:2551627/1‑93 (MQ=255)
actgactgTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTg > 2:4016916/1‑93 (MQ=255)
ctgactgTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGc < 1:2886424/93‑1 (MQ=255)
ctgactgTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGc > 1:3580359/1‑93 (MQ=255)
ctgactgTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCCGCCCGGCCTGc > 1:880558/1‑93 (MQ=255)
tgactgTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCa < 2:272631/93‑1 (MQ=255)
gactgTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCAt < 1:1159467/93‑1 (MQ=255)
ctgTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCAtgt < 2:1727945/93‑1 (MQ=255)
tgTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCAtgtt < 2:3383786/93‑1 (MQ=255)
tCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGTGCCGGGCTGGAtgttgt > 2:327574/1‑93 (MQ=255)
tCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGGCTGCAtgttgt < 1:4509559/93‑1 (MQ=255)
cGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATgttgtt < 1:3075356/93‑1 (MQ=255)
ggATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGttgttg < 2:413103/93‑1 (MQ=255)
ggATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGttgttg > 1:409189/1‑93 (MQ=255)
ggATACGGATCGGAGACGATGATGAAGCTGCGCGGATCACGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGttgttg < 2:4367523/93‑1 (MQ=255)
gATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTgg > 1:2110065/1‑93 (MQ=255)
gATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTgg > 2:4204661/1‑93 (MQ=255)
aTACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGt < 2:3385275/93‑1 (MQ=255)
tACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTa > 2:2921707/1‑93 (MQ=255)
tACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTa > 1:935042/1‑93 (MQ=255)
cGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTaca > 2:3420974/1‑93 (MQ=255)
aTCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACAt < 1:3287920/93‑1 (MQ=255)
acGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATg < 1:3612805/92‑1 (MQ=255)
cGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATgg < 1:3700740/93‑1 (MQ=255)
ggAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGt > 1:2523412/1‑93 (MQ=255)
ggAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGACTGCATGTTGTTGGTACACATGGt < 2:3157915/93‑1 (MQ=255)
ggAGACGATGATGAAGCTGCGCGGATCGCGACAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCGTGTTGTTGGTACACATggc > 1:1136975/1‑92 (MQ=255)
gagaCGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTc < 2:3566779/93‑1 (MQ=255)
gagaCGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTc < 2:2867207/93‑1 (MQ=255)
gagaCGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTc > 1:670756/1‑93 (MQ=255)
gaCGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCa > 1:1824882/1‑93 (MQ=255)
gaCGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCa < 2:781721/93‑1 (MQ=255)
aCGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAg < 1:1640315/93‑1 (MQ=255)
gatgatGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTTGTACACATGGTCCAGTa > 2:1931387/1‑93 (MQ=255)
atgatgAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTaa > 2:2657816/1‑93 (MQ=255)
gatgaAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAAc < 2:2040772/93‑1 (MQ=255)
tgaAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACAt < 1:3702341/93‑1 (MQ=255)
tgaAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACAt > 1:3049688/1‑93 (MQ=255)
tgaAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACAt < 1:433540/93‑1 (MQ=255)
tgaAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACAt < 1:2201307/93‑1 (MQ=255)
gaAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACAtt > 1:272945/1‑93 (MQ=255)
aaGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTc < 2:2992389/93‑1 (MQ=255)
|
CCCTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGTTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTC > NC_000913/2299176‑2299355
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCCCTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGTTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGTT > NC_000913/2299174‑2299359
|
CGCCCTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCT < SRR4302544.1696100/94‑1 (MQ=60)
CGCCCTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCT < SRR4302544.3091175/94‑1 (MQ=60)
CGCCCTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCT > SRR4302544.1346127/1‑94 (MQ=60)
GCCCTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTG > SRR4302544.1586090/1‑94 (MQ=60)
GCCCTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTG > SRR4302544.1472450/1‑94 (MQ=60)
CCTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCG < SRR4302544.2129824/94‑1 (MQ=60)
CTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGG > SRR4302544.961702/1‑94 (MQ=60)
TTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCCGAGACGATGATGAAGCTTCGCGGA > SRR4302544.4488152/1‑94 (MQ=60)
TCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATC < SRR4302544.633308/94‑1 (MQ=60)
CTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGATGCACGGATCG > SRR4302544.1394383/1‑94 (MQ=60)
CTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCG < SRR4302544.2597917/94‑1 (MQ=60)
CTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCG > SRR4302544.2429726/1‑94 (MQ=60)
CACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCCGC > SRR4302544.2946766/1‑94 (MQ=60)
CACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGC > SRR4302544.3438997/1‑94 (MQ=60)
CATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCC > SRR4302544.4556146/1‑94 (MQ=60)
GCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCA < SRR4302544.3819168/94‑1 (MQ=60)
CGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCAT > SRR4302544.1109557/1‑94 (MQ=60)
CGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCAT < SRR4302544.2456731/94‑1 (MQ=60)
GGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATA > SRR4302544.2873473/1‑94 (MQ=60)
GTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATAC < SRR4302544.4168767/94‑1 (MQ=60)
CGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGCATTCCGCCAGACCGGCATACTC > SRR4302544.3080800/1‑94 (MQ=60)
GGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCT < SRR4302544.2865378/94‑1 (MQ=60)
GCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTC < SRR4302544.3297237/94‑1 (MQ=60)
CAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCT > SRR4302544.1169966/1‑94 (MQ=60)
AGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTT > SRR4302544.251420/1‑94 (MQ=60)
GATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCA > SRR4302544.1483866/1‑94 (MQ=60)
ATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTGTTCAT > SRR4302544.1518849/1‑94 (MQ=60)
ATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCAT > SRR4302544.4473011/1‑94 (MQ=60)
AAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCACCCCGGCATACGCTCTTCATTGA > SRR4302544.3239766/1‑94 (MQ=60)
AGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGAT > SRR4302544.1551295/1‑94 (MQ=60)
TCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGT < SRR4302544.4678327/94‑1 (MQ=60)
CGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTC < SRR4302544.1241970/94‑1 (MQ=60)
GCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCG < SRR4302544.3048543/94‑1 (MQ=60)
CGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCC < SRR4302544.606393/94‑1 (MQ=60)
GCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCT > SRR4302544.318210/1‑94 (MQ=60)
CACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTG > SRR4302544.1214702/1‑94 (MQ=60)
CACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTG > SRR4302544.2576122/1‑94 (MQ=60)
ACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGC > SRR4302544.3614705/1‑94 (MQ=60)
ACTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCCGCCCGGCCTGC > SRR4302544.889288/1‑94 (MQ=60)
CTGACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCA < SRR4302544.2914261/94‑1 (MQ=60)
GACTGTCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATG < SRR4302544.1171011/94‑1 (MQ=60)
TCGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGGCTGCATGTTGTT < SRR4302544.4554766/94‑1 (MQ=60)
CGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTG > SRR4302544.413353/1‑94 (MQ=60)
CGGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTG < SRR4302544.3104663/94‑1 (MQ=60)
GGATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGG > SRR4302544.2130357/1‑94 (MQ=60)
ATACGGATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTA > SRR4302544.944254/1‑94 (MQ=60)
ATCGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATG < SRR4302544.3319247/94‑1 (MQ=60)
ACGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGG < SRR4302544.3648220/94‑1 (MQ=60)
CGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGT > SRR4302544.2547659/1‑94 (MQ=60)
CGGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGT < SRR4302544.3737581/94‑1 (MQ=60)
CGGAGACGATGATGAAGCTGCGCGGATCGCGACAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCGTGTTGTTGGTACACATGGC > SRR4302544.1148283/1‑94 (MQ=60)
GGAGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTC > SRR4302544.677385/1‑94 (MQ=60)
AGACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCA > SRR4302544.1842658/1‑94 (MQ=60)
GACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATTTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAG > SRR4302544.242261/1‑94 (MQ=60)
ACGATGATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGT < SRR4302544.1656479/94‑1 (MQ=60)
ATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGTCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACAT < SRR4302544.786474/94‑1 (MQ=60)
ATGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACAT > SRR4302544.3078830/1‑94 (MQ=60)
TGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATT < SRR4302544.3739192/94‑1 (MQ=60)
TGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATT < SRR4302544.437916/94‑1 (MQ=60)
TGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATT > SRR4302544.275816/1‑94 (MQ=60)
TGAAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATT < SRR4302544.2222051/94‑1 (MQ=60)
AAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCA > SRR4302544.1324311/1‑94 (MQ=60)
AAGCTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCA > SRR4302544.2244381/1‑94 (MQ=60)
AGCTGCGNGNATCGCGCNAGCNNNGNNTACGCTCTTCATTGATGTNCGGCCCGGCCTNCATGTTGNTGGTACACATGGTCCAGTAAACATTCAG < SRR4302544.2497127/94‑1 (MQ=60)
GTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGTT < SRR4302544.265121/94‑1 (MQ=60)
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CGCCCTCTTTCTCTACCCACATTGCGGTCGGCAGGATCAAGTCGGCGGCCAGCGCACTGACTGTCGGATACGGATCGGAGACGATGATGAAGTTGCGCGGATCGCGCCAGCCCGGCATACGCTCTTCATTGATGTTCGGCCCGGCCTGCATGTTGTTGGTACACATGGTCCAGTAAACATTCAGTT > NC_000913/2299174‑2299359
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
