Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,306,256 |
T→C |
E127G (GAA→GGA) |
yojI ← |
putative ATP‑binding component of a transport system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,306,256 | 0 | T | C | 98.5%
| 414.9
/ ‑4.0
| 130 | E127G (GAA→GGA) | yojI | putative ATP‑binding component of a transport system |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base C (70/58); total (70/60) |
| Fisher's exact test for biased strand distribution p-value = 2.11e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
Only 100 of 142 total aligned reads displayed.
ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTTCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGC > NC_000913/2306166‑2306345
|
aTCCAGATAGCCGTTACCAGCAACATTTTGCCCGGCAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTccc > 2:742253/1‑93 (MQ=255)
aTCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTccc < 1:3823145/93‑1 (MQ=255)
aTCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTccc < 1:510617/93‑1 (MQ=255)
aTCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTccc < 2:1585215/93‑1 (MQ=255)
aTCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTccc > 2:2443646/1‑93 (MQ=255)
aTCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTccc > 1:4478159/1‑93 (MQ=255)
tCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTccca > 1:3438062/1‑92 (MQ=255)
ccAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCgg > 2:4049028/1‑93 (MQ=255)
aGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCa > 2:1734632/1‑93 (MQ=255)
gATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAg > 2:3136189/1‑93 (MQ=255)
tAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGAc > 2:1327031/1‑93 (MQ=255)
tAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGAc > 2:2242533/1‑93 (MQ=255)
gCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCATACGc > 2:4111662/1‑93 (MQ=255)
gTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGcaca > 1:2834021/1‑93 (MQ=255)
ccAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAg > 2:4686361/1‑93 (MQ=255)
cAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGc > 2:666542/1‑93 (MQ=255)
cAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGc < 1:710177/93‑1 (MQ=255)
cAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCCGCAGACGCACAACAGc > 2:666540/1‑93 (MQ=255)
aGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCa < 2:2022937/93‑1 (MQ=255)
gCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCaa > 1:2323941/1‑93 (MQ=255)
cAACATTTTGCCCTACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAAt < 2:2483606/93‑1 (MQ=255)
cAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAAt < 1:2493234/93‑1 (MQ=255)
cAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAAt < 2:2938540/93‑1 (MQ=255)
aaCATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATg > 1:376676/1‑93 (MQ=255)
aaCATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATg > 1:983259/1‑93 (MQ=255)
aaCATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATg < 2:3796798/93‑1 (MQ=255)
aCATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATgg > 2:1030072/1‑93 (MQ=255)
aCATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATgg < 2:2308652/93‑1 (MQ=255)
aCATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATgg > 2:3860454/1‑93 (MQ=255)
cATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGt < 1:859047/93‑1 (MQ=255)
ttttGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGa < 1:511195/93‑1 (MQ=255)
ccGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCTCCTGCACCAGTCCCGGCAGACGCACAACAGCAATCGTGATACTgc > 1:3128275/1‑93 (MQ=255)
ccGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGATGCACAAAAGCAATGGTGATATTgc < 2:2572149/93‑1 (MQ=255)
ccGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTgc < 1:3490992/93‑1 (MQ=255)
aCAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGca < 1:440924/93‑1 (MQ=255)
aGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGcaca < 1:1002133/93‑1 (MQ=255)
aGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGcaca > 2:2895525/1‑93 (MQ=255)
aGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGcaca > 1:3011347/1‑93 (MQ=255)
aGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGcaca > 1:3011346/1‑93 (MQ=255)
cATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATc < 1:1024135/93‑1 (MQ=255)
tCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGc > 1:139543/1‑93 (MQ=255)
tCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGc > 2:1086328/1‑93 (MQ=255)
ccACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCt > 1:4264160/1‑93 (MQ=255)
ccACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCt < 1:3357946/93‑1 (MQ=255)
ccACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCt < 1:3311579/93‑1 (MQ=255)
cacaGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTg < 2:3492924/93‑1 (MQ=255)
cacaGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTg > 1:3170134/1‑93 (MQ=255)
acaGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTgg > 1:2126275/1‑93 (MQ=255)
acaGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTgg < 1:281696/93‑1 (MQ=255)
caGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGt < 2:4397691/93‑1 (MQ=255)
caGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGt > 1:331821/1‑93 (MQ=255)
aGATACGCCGCTTAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGtt > 2:3911126/1‑93 (MQ=255)
aGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGtt > 1:1227071/1‑93 (MQ=255)
aGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGtt > 2:2550690/1‑93 (MQ=255)
aGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGtt < 1:2675013/93‑1 (MQ=255)
aTACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTaa > 2:1124067/1‑93 (MQ=255)
aTACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTaa > 1:2362174/1‑93 (MQ=255)
tACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAc > 2:3201610/1‑93 (MQ=255)
tACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAc > 1:1812411/1‑93 (MQ=255)
aCGCCGCTGAACCGATAGTGAGAATCATCCACTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAcc < 2:710087/93‑1 (MQ=255)
cgccgcTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAccc > 1:3992177/1‑93 (MQ=255)
cgcTGAACCGATAGTGAGAATGATCCGCTGCTCCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGc < 1:2992179/93‑1 (MQ=255)
cgcTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGc < 1:2992180/93‑1 (MQ=255)
gcTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGcc > 1:3450378/1‑93 (MQ=255)
gcTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGcc > 1:401848/1‑93 (MQ=255)
gcTGAACCGATAGTGAGAATGATACCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGcc < 2:2597145/93‑1 (MQ=255)
cTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCa > 2:2365987/1‑93 (MQ=255)
aCCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCaa < 2:450668/93‑1 (MQ=255)
gATAGTGAGAATGATCCCCTGCACCAGTTCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGa < 2:4406065/93‑1 (MQ=255)
gATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGa > 2:4497605/1‑93 (MQ=255)
gATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGa > 1:1347154/1‑93 (MQ=255)
gATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGa < 1:3457007/93‑1 (MQ=255)
aTAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAg < 2:873318/93‑1 (MQ=255)
tAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAgg > 2:154989/1‑93 (MQ=255)
aGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGgc < 1:3176688/93‑1 (MQ=255)
aGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGgc < 2:2989131/93‑1 (MQ=255)
gTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGgcg > 2:522699/1‑93 (MQ=255)
gTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGgcg > 1:23833/1‑93 (MQ=255)
gTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGgcg > 2:2042630/1‑93 (MQ=255)
gagaATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCt < 1:2746105/93‑1 (MQ=255)
gaATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATTGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTAc > 2:873924/1‑93 (MQ=255)
gaATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCCGCAACGACGCGCTAc > 2:2940947/1‑93 (MQ=255)
aTCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgt < 1:1411794/93‑1 (MQ=255)
aTCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgt < 2:1500475/93‑1 (MQ=255)
tCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgtt > 1:1021371/1‑93 (MQ=255)
tCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgtt < 1:3995154/93‑1 (MQ=255)
accccTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgtt < 2:3716274/92‑1 (MQ=255)
ccccTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgttg > 1:161164/1‑93 (MQ=255)
cccTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgttgt < 2:1193446/93‑1 (MQ=255)
tGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCa < 2:4152075/93‑1 (MQ=255)
cgCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTCCGCAGATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTCCCGAGTTGTTCa < 2:1642192/92‑1 (MQ=255)
gCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCaa > 2:395918/1‑93 (MQ=255)
cACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAAt < 2:1426108/93‑1 (MQ=255)
cACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAAt < 2:3799162/93‑1 (MQ=255)
ccAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATgc > 1:804042/1‑93 (MQ=255)
ccAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATgc > 1:2094678/1‑93 (MQ=255)
cAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATgcg < 1:4578618/93‑1 (MQ=255)
aGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATgcgc > 2:3246277/1‑93 (MQ=255)
aGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATgcgc < 2:836381/93‑1 (MQ=255)
aGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATgcgc < 1:1286053/93‑1 (MQ=255)
|
ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTTCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGC > NC_000913/2306166‑2306345
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTTCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCT > NC_000913/2306165‑2306346
|
CATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCC > SRR4302544.4523180/1‑94 (MQ=60)
CATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCC < SRR4302544.2595708/94‑1 (MQ=60)
CTCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCG < SRR4302544.3948456/94‑1 (MQ=60)
ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCG < SRR4302544.515656/94‑1 (MQ=60)
ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCG < SRR4302544.3861050/94‑1 (MQ=60)
ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCG > SRR4302544.3664071/1‑94 (MQ=60)
ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCG > SRR4302544.3038873/1‑94 (MQ=60)
TAACCGTTACCAGCAACATTTTGCCCGACAGCCACCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACG < SRR4302544.4718940/94‑1 (MQ=60)
GCCGTTCCCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCA < SRR4302544.1466905/94‑1 (MQ=60)
CGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACA > SRR4302544.3388830/1‑94 (MQ=60)
CGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACA > SRR4302544.2861403/1‑94 (MQ=60)
GTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAA < SRR4302544.133188/94‑1 (MQ=60)
CAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCA < SRR4302544.717220/94‑1 (MQ=60)
CAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCA > SRR4302544.4170561/1‑94 (MQ=60)
AGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAA > SRR4302544.2345973/1‑94 (MQ=60)
GCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAAT < SRR4302544.3050303/94‑1 (MQ=60)
CAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATG > SRR4302544.992898/1‑94 (MQ=60)
CAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATG < SRR4302544.2517117/94‑1 (MQ=60)
CAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATG > SRR4302544.380517/1‑94 (MQ=60)
CATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTG < SRR4302544.867545/94‑1 (MQ=60)
TTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGAT < SRR4302544.516237/94‑1 (MQ=60)
TGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATT < SRR4302544.2886911/94‑1 (MQ=60)
CCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCTCCTGCACCAGTCCCGGCAGACGCACAACAGCAATCGTGATACTGC > SRR4302544.3158000/1‑94 (MQ=60)
CCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATAATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGCGATATTGC > SRR4302544.2483881/1‑94 (MQ=60)
CCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCG < SRR4302544.3524272/94‑1 (MQ=60)
CGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGC > SRR4302544.1890367/1‑94 (MQ=60)
ACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCAC < SRR4302544.445343/94‑1 (MQ=60)
CAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACA > SRR4302544.3040208/1‑94 (MQ=60)
CAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACA > SRR4302544.3040207/1‑94 (MQ=60)
AGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACAT < SRR4302544.1012077/94‑1 (MQ=60)
AGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACAT < SRR4302544.2277575/94‑1 (MQ=60)
CATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCG < SRR4302544.1034360/94‑1 (MQ=60)
ATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGC > SRR4302544.140866/1‑94 (MQ=60)
ATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGC > SRR4302544.3239648/1‑94 (MQ=60)
TCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCT > SRR4302544.4307661/1‑94 (MQ=60)
CCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTG < SRR4302544.3389991/94‑1 (MQ=60)
CCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTG < SRR4302544.3343116/94‑1 (MQ=60)
CCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTG > SRR4302544.3200304/1‑94 (MQ=60)
CACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGG > SRR4302544.2146663/1‑94 (MQ=60)
ACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGT > SRR4302544.335271/1‑94 (MQ=60)
ACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGT < SRR4302544.2771085/94‑1 (MQ=60)
ACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGT < SRR4302544.284631/94‑1 (MQ=60)
ACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGT > SRR4302544.730966/1‑94 (MQ=60)
CAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTT > SRR4302544.1239210/1‑94 (MQ=60)
AGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCNCGGCAGACGCACAAAAGCAATGGNNNNATNGCGCNCANCNCTNGNNN > SRR4302544.3434232/1‑94 (MQ=60)
AGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTA < SRR4302544.2700656/94‑1 (MQ=60)
GATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAA > SRR4302544.2384542/1‑94 (MQ=60)
ATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAC > SRR4302544.1830108/1‑94 (MQ=60)
ACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCC > SRR4302544.4031917/1‑94 (MQ=60)
CGCTGAACCGATAGTGAGAATGATCCGCTGCTCCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCC < SRR4302544.3020873/94‑1 (MQ=60)
CGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCC < SRR4302544.3020874/94‑1 (MQ=60)
CGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCC > SRR4302544.405931/1‑94 (MQ=60)
CGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCC > SRR4302544.3483331/1‑94 (MQ=60)
CGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGA > SRR4302544.1360500/1‑94 (MQ=60)
CGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGA > SRR4302544.1213273/1‑94 (MQ=60)
GATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAG < SRR4302544.3490002/94‑1 (MQ=60)
AGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCG > SRR4302544.24065/1‑94 (MQ=60)
AGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCG < SRR4302544.3206910/94‑1 (MQ=60)
TGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCT < SRR4302544.347408/94‑1 (MQ=60)
GAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTA < SRR4302544.2772560/94‑1 (MQ=60)
ATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTT < SRR4302544.1425854/94‑1 (MQ=60)
ATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTT > SRR4302544.1031570/1‑94 (MQ=60)
TCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTG < SRR4302544.4034921/94‑1 (MQ=60)
TCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTG > SRR4302544.162735/1‑94 (MQ=60)
ACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGC > SRR4302544.2114834/1‑94 (MQ=60)
ACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGC > SRR4302544.811875/1‑94 (MQ=60)
CCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCG < SRR4302544.949579/94‑1 (MQ=60)
CAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGC < SRR4302544.4624225/94‑1 (MQ=60)
AGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCT < SRR4302544.4459241/94‑1 (MQ=60)
AGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCT < SRR4302544.1298720/94‑1 (MQ=60)
AGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCT > SRR4302544.2444996/1‑94 (MQ=60)
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CATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTTCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCT > NC_000913/2306165‑2306346
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
