Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,306,256 T→C E127G (GAA→GGA)  yojI ← putative ATP‑binding component of a transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,306,2560TC100.0% 672.9 / NA 205E127G (GAA→GGA) yojIputative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (113/92);  total (113/92)

Only 100 of 213 total aligned reads displayed.

ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTTCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCG  >  NC_000913/2306166‑2306344
                                                                                          |                                                                                        
aTCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTccc                                                                                        <  1:3930683/93‑1 (MQ=255)
aTCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTccc                                                                                        <  2:4382481/93‑1 (MQ=255)
 tCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCg                                                                                       >  2:380448/1‑93 (MQ=255)
   cAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGc                                                                                     >  2:5888704/1‑93 (MQ=255)
    aGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCa                                                                                    >  1:1024833/1‑93 (MQ=255)
    aGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCa                                                                                    >  1:4171282/1‑93 (MQ=255)
    aGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCa                                                                                    >  1:3380860/1‑93 (MQ=255)
     gATAGCCTTTCCCAGCATCATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAg                                                                                   <  2:5155022/93‑1 (MQ=255)
      aTAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGa                                                                                  <  2:3929777/93‑1 (MQ=255)
       tAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGAc                                                                                 >  1:3706817/1‑93 (MQ=255)
       tAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGAc                                                                                 >  2:1473435/1‑93 (MQ=255)
        aGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACg                                                                                >  2:2604255/1‑93 (MQ=255)
         gCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGc                                                                               <  2:804983/93‑1 (MQ=255)
           cGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGcac                                                                             <  1:5526850/93‑1 (MQ=255)
            gTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGGCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGcaca                                                                            >  1:5437303/1‑93 (MQ=255)
            gTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGcaca                                                                            >  1:1832405/1‑93 (MQ=255)
             ttACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACaa                                                                           >  1:4818636/1‑93 (MQ=255)
             ttACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACaa                                                                           >  1:1349729/1‑93 (MQ=255)
              tACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACaaa                                                                          >  1:4103535/1‑93 (MQ=255)
               aCCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACaaaa                                                                         <  1:2773926/93‑1 (MQ=255)
               aCCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACaaaa                                                                         <  2:2184612/93‑1 (MQ=255)
                ccAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAg                                                                        >  2:1803038/1‑93 (MQ=255)
                ccAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAg                                                                        <  2:2993459/93‑1 (MQ=255)
                 cAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGc                                                                       <  2:5625767/93‑1 (MQ=255)
                 cAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGc                                                                       <  2:6393680/93‑1 (MQ=255)
                  aGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCa                                                                      <  1:3034540/93‑1 (MQ=255)
                   gCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCaa                                                                     >  2:1865368/1‑93 (MQ=255)
                    cAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAAt                                                                    <  1:4469224/93‑1 (MQ=255)
                      aCATTTTGCCNGACAGCATCCACANATACGCCGCTGAACCGATAGTGAGAATGAGCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATgg                                                                  <  1:3104290/93‑1 (MQ=255)
                      aCATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATgg                                                                  <  1:1514012/93‑1 (MQ=255)
                      aCATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATgg                                                                  <  2:1610068/93‑1 (MQ=255)
                       cATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGt                                                                 <  2:3223761/93‑1 (MQ=255)
                        aTTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTg                                                                >  1:5645070/1‑93 (MQ=255)
                          tttGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGat                                                              <  2:4133204/93‑1 (MQ=255)
                           ttGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGata                                                             <  2:3876207/93‑1 (MQ=255)
                           ttGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGata                                                             <  2:44943/93‑1 (MQ=255)
                            tGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGatat                                                            <  1:3521448/93‑1 (MQ=255)
                            tGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGatat                                                            <  2:6022526/93‑1 (MQ=255)
                             gCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATAtt                                                           <  2:853876/93‑1 (MQ=255)
                               ccGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTgc                                                         <  2:5313833/93‑1 (MQ=255)
                                cGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTgcg                                                        <  1:1265631/93‑1 (MQ=255)
                                cGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTgcg                                                        >  1:6196425/1‑93 (MQ=255)
                                 gACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTgcgc                                                       <  2:2902608/93‑1 (MQ=255)
                                 gACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTgcgc                                                       >  1:190966/1‑93 (MQ=255)
                                 gACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTgcgc                                                       >  1:6146928/1‑93 (MQ=255)
                                    aGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGcaca                                                    <  1:2551728/93‑1 (MQ=255)
                                    aGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGcaca                                                    <  2:3143643/93‑1 (MQ=255)
                                    aGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGcaca                                                    >  2:3120661/1‑93 (MQ=255)
                                    aGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGcaca                                                    >  1:781666/1‑93 (MQ=255)
                                    aGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGcaca                                                    >  2:6312306/1‑93 (MQ=255)
                                      cATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATc                                                  >  2:5229598/1‑93 (MQ=255)
                                        tCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGc                                                >  1:3657523/1‑93 (MQ=255)
                                        tCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGc                                                >  2:1034131/1‑93 (MQ=255)
                                        tCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTACACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGc                                                >  2:3566961/1‑93 (MQ=255)
                                          cacaGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTg                                              <  2:6647025/93‑1 (MQ=255)
                                           acaGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTgg                                             >  2:1169737/1‑93 (MQ=255)
                                           acaGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTgg                                             <  1:498716/93‑1 (MQ=255)
                                             aGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGtt                                           >  1:3799107/1‑93 (MQ=255)
                                              gATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTa                                          >  2:1135192/1‑93 (MQ=255)
                                                 aCGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAcc                                       <  2:6433178/93‑1 (MQ=255)
                                                 aCGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAcc                                       <  1:6465946/93‑1 (MQ=255)
                                                  cgccgcTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAccc                                      <  2:3368517/93‑1 (MQ=255)
                                                   gccgcTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAcccc                                     >  1:3058870/1‑93 (MQ=255)
                                                      gcTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGcc                                  >  2:2312319/1‑93 (MQ=255)
                                                       cTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCa                                 >  2:4831691/1‑93 (MQ=255)
                                                         gAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGc                               >  1:335076/1‑93 (MQ=255)
                                                          aaCCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCa                              >  2:5395673/1‑93 (MQ=255)
                                                          aaCCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCa                              >  2:1983216/1‑93 (MQ=255)
                                                           aCCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCaa                             <  2:415102/93‑1 (MQ=255)
                                                            ccGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAAGGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAAc                            <  1:1656777/93‑1 (MQ=255)
                                                             cGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACg                           >  2:5860258/1‑93 (MQ=255)
                                                             cGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACg                           >  2:2958551/1‑93 (MQ=255)
                                                             cGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACACCGCCAGCAACg                           >  1:2233261/1‑93 (MQ=255)
                                                              gATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGa                          >  1:5732324/1‑93 (MQ=255)
                                                              gATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGa                          <  2:2105836/93‑1 (MQ=255)
                                                                tattGATAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAgg                        <  2:430337/90‑1 (MQ=255)
                                                                tAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAgg                        >  2:3718790/1‑93 (MQ=255)
                                                                tAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAgg                        <  2:5696790/93‑1 (MQ=255)
                                                                tAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAgg                        <  1:4593234/93‑1 (MQ=255)
                                                                  gTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGgcg                      >  2:4593979/1‑93 (MQ=255)
                                                                   tGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGgcgc                     <  1:1599866/93‑1 (MQ=255)
                                                                   tGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGgcgc                     <  2:5115377/93‑1 (MQ=255)
                                                                    gagaATGATCCCCTGCACCAGTCGCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCt                    <  1:2917775/93‑1 (MQ=255)
                                                                     agaATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTa                   <  1:3488861/93‑1 (MQ=255)
                                                                     agaATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTa                   >  2:1226513/1‑93 (MQ=255)
                                                                      gaATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTAc                  <  1:626228/93‑1 (MQ=255)
                                                                      gaATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTAc                  >  1:516669/1‑93 (MQ=255)
                                                                        aTGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCg                >  2:1920683/1‑93 (MQ=255)
                                                                          gATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAg              >  2:5225492/1‑93 (MQ=255)
                                                                          gATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAg              <  2:3058517/93‑1 (MQ=255)
                                                                           aTCCCCTGCACCAGTCCCGCCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgt             <  1:2967073/93‑1 (MQ=255)
                                                                            tCCCGTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAggt            >  1:77856/1‑91 (MQ=255)
                                                                             ccccTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgttg           >  1:200209/1‑93 (MQ=255)
                                                                              cccTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgttgt          >  1:2450554/1‑93 (MQ=255)
                                                                              cccTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgttgt          >  1:5616860/1‑93 (MQ=255)
                                                                              cccTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAgttgt          >  1:927962/1‑93 (MQ=255)
                                                                              cccTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGAAACGAGGCGCTACCGAgttgt          >  1:6558607/1‑93 (MQ=255)
                                                                                cTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGCGGCGCTACCGAGATGTTc        >  1:26964/1‑93 (MQ=255)
                                                                                     ccAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATgc   <  2:3497132/93‑1 (MQ=255)
                                                                                      cAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATgcg  <  1:5966203/93‑1 (MQ=255)
                                                                                          |                                                                                        
ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTTCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCG  >  NC_000913/2306166‑2306344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCCATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTTCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCTCGA  >  NC_000913/2306163‑2306349
                                                                                             |                                                                                             
GCCATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTC                                                                                               >  SRR4302536.1275193/1‑94 (MQ=60)
GCCATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTC                                                                                               <  SRR4302536.1827841/94‑1 (MQ=60)
GCCATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTC                                                                                               >  SRR4302536.4276916/1‑94 (MQ=60)
  CATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCC                                                                                             <  SRR4302536.2295999/94‑1 (MQ=60)
   ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCG                                                                                            <  SRR4302536.4047478/94‑1 (MQ=60)
   ATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCG                                                                                            >  SRR4302536.3167794/1‑94 (MQ=60)
     CCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGC                                                                                          <  SRR4302536.6380554/94‑1 (MQ=60)
      CAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCA                                                                                         >  SRR4302536.1055180/1‑94 (MQ=60)
      CAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCA                                                                                         >  SRR4302536.4295206/1‑94 (MQ=60)
      CAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCA                                                                                         >  SRR4302536.2804337/1‑94 (MQ=60)
      CAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCA                                                                                         >  SRR4302536.3481335/1‑94 (MQ=60)
         ATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGAC                                                                                      >  SRR4302536.3817634/1‑94 (MQ=60)
            GCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCA                                                                                   >  SRR4302536.4870573/1‑94 (MQ=60)
              CGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGGCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACA                                                                                 >  SRR4302536.5599905/1‑94 (MQ=60)
              CGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACA                                                                                 <  SRR4302536.5691638/94‑1 (MQ=60)
              CGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACA                                                                                 >  SRR4302536.1887646/1‑94 (MQ=60)
              CGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACA                                                                                 >  SRR4302536.311239/1‑94 (MQ=60)
               GTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAA                                                                                >  SRR4302536.1389986/1‑94 (MQ=60)
               GTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAA                                                                                >  SRR4302536.4963642/1‑94 (MQ=60)
                TTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAA                                                                               >  SRR4302536.4225278/1‑94 (MQ=60)
                TTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAA                                                                               <  SRR4302536.5601657/94‑1 (MQ=60)
                TTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAA                                                                               <  SRR4302536.3619583/94‑1 (MQ=60)
                  ACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAG                                                                             >  SRR4302536.299763/1‑94 (MQ=60)
                  ACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAG                                                                             <  SRR4302536.2856367/94‑1 (MQ=60)
                   CCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGC                                                                            >  SRR4302536.2016176/1‑94 (MQ=60)
                    CAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCA                                                                           <  SRR4302536.3112788/94‑1 (MQ=60)
                     AGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAA                                                                          <  SRR4302536.3123720/94‑1 (MQ=60)
                      GCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAAT                                                                         >  SRR4302536.3778207/1‑94 (MQ=60)
                       CAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATG                                                                        <  SRR4302536.4603480/94‑1 (MQ=60)
                       CAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATG                                                                        >  SRR4302536.1925883/1‑94 (MQ=60)
                        AACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGG                                                                       >  SRR4302536.3691885/1‑94 (MQ=60)
                         ACATTTTGCCNGACAGCATCCACANATACGCCGCTGAACCGATAGTGAGAATGAGCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGT                                                                      <  SRR4302536.3194884/94‑1 (MQ=60)
                         ACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGT                                                                      >  SRR4302536.2713765/1‑94 (MQ=60)
                         ACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGT                                                                      <  SRR4302536.1558595/94‑1 (MQ=60)
                          CATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTG                                                                     >  SRR4302536.5812801/1‑94 (MQ=60)
                           ATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGA                                                                    >  SRR4302536.1418864/1‑94 (MQ=60)
                              TTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATAT                                                                 >  SRR4302536.4319201/1‑94 (MQ=60)
                               TGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATT                                                                <  SRR4302536.3626664/94‑1 (MQ=60)
                                 CCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGC                                                              >  SRR4302536.6324616/1‑94 (MQ=60)
                                  CCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCG                                                             >  SRR4302536.6380987/1‑94 (MQ=60)
                                  CCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCG                                                             <  SRR4302536.5964368/94‑1 (MQ=60)
                                  CCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCG                                                             <  SRR4302536.5804179/94‑1 (MQ=60)
                                   CGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGC                                                            >  SRR4302536.196010/1‑94 (MQ=60)
                                   CGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGC                                                            >  SRR4302536.6330061/1‑94 (MQ=60)
                                   CGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGC                                                            <  SRR4302536.1303568/94‑1 (MQ=60)
                                      CAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACA                                                         >  SRR4302536.804555/1‑94 (MQ=60)
                                       AGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACAT                                                        <  SRR4302536.2628563/94‑1 (MQ=60)
                                       AGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACACACAAAAGCAATGGTGATATTGCGCACAT                                                        <  SRR4302536.3456327/94‑1 (MQ=60)
                                          ATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGC                                                     >  SRR4302536.1677333/1‑94 (MQ=60)
                                          ATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGC                                                     >  SRR4302536.1366373/1‑94 (MQ=60)
                                          ATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGC                                                     >  SRR4302536.3766863/1‑94 (MQ=60)
                                           TCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCT                                                    <  SRR4302536.4692703/94‑1 (MQ=60)
                                             CACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGG                                                  <  SRR4302536.6447760/94‑1 (MQ=60)
                                             CACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGG                                                  >  SRR4302536.3794547/1‑94 (MQ=60)
                                              ACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGT                                                 >  SRR4302536.956027/1‑94 (MQ=60)
                                              ACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGT                                                 <  SRR4302536.511585/94‑1 (MQ=60)
                                               CAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTT                                                >  SRR4302536.3912405/1‑94 (MQ=60)
                                                AGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTA                                               <  SRR4302536.5863118/94‑1 (MQ=60)
                                                  ATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAC                                             <  SRR4302536.3328022/94‑1 (MQ=60)
                                                  ATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAAC                                             <  SRR4302536.2599120/94‑1 (MQ=60)
                                                   TACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACC                                            <  SRR4302536.1169305/94‑1 (MQ=60)
                                                    ACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCC                                           <  SRR4302536.6658944/94‑1 (MQ=60)
                                                     CGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCC                                          >  SRR4302536.3148649/1‑94 (MQ=60)
                                                      GCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCG                                         <  SRR4302536.3992364/94‑1 (MQ=60)
                                                      GCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCG                                         >  SRR4302536.5262592/1‑94 (MQ=60)
                                                        CGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCC                                       >  SRR4302536.6093028/1‑94 (MQ=60)
                                                         GCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCA                                      <  SRR4302536.3525767/94‑1 (MQ=60)
                                                           TGAACCGATCGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCACCAGA                                    >  SRR4302536.6745056/1‑94 (MQ=60)
                                                           TGAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGC                                    >  SRR4302536.343964/1‑94 (MQ=60)
                                                            GAACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCA                                   <  SRR4302536.2209989/94‑1 (MQ=60)
                                                             AACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAA                                  >  SRR4302536.4277596/1‑94 (MQ=60)
                                                              ACCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAAC                                 >  SRR4302536.2946088/1‑94 (MQ=60)
                                                               CCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACG                                <  SRR4302536.404324/94‑1 (MQ=60)
                                                               CCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACG                                >  SRR4302536.5103186/1‑94 (MQ=60)
                                                               CCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACACCGCCAGCAACG                                >  SRR4302536.2300813/1‑94 (MQ=60)
                                                               CCGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAAGGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACG                                <  SRR4302536.1704902/94‑1 (MQ=60)
                                                                CGATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGA                               >  SRR4302536.5902834/1‑94 (MQ=60)
                                                                  ATAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGG                             >  SRR4302536.3124594/1‑94 (MQ=60)
                                                                   TAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGC                            <  SRR4302536.4731119/94‑1 (MQ=60)
                                                                   TAGTGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGC                            >  SRR4302536.5715469/1‑94 (MQ=60)
                                                                      TGAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCT                         <  SRR4302536.1646573/94‑1 (MQ=60)
                                                                       GAGAATGATCCCCTGCACCAGTCGCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTA                        <  SRR4302536.3003898/94‑1 (MQ=60)
                                                                       GAGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTA                        >  SRR4302536.1589887/1‑94 (MQ=60)
                                                                        AGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTAC                       <  SRR4302536.3592927/94‑1 (MQ=60)
                                                                        AGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTAC                       >  SRR4302536.529918/1‑94 (MQ=60)
                                                                        AGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTAC                       >  SRR4302536.383548/1‑94 (MQ=60)
                                                                        AGAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTAC                       >  SRR4302536.481671/1‑94 (MQ=60)
                                                                         GAATGATCCCCTGCACCAGTCCGGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACC                      <  SRR4302536.5341750/94‑1 (MQ=60)
                                                                         GAATGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACC                      <  SRR4302536.644797/94‑1 (MQ=60)
                                                                            TGATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAG                   <  SRR4302536.699249/94‑1 (MQ=60)
                                                                             GATCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGT                  >  SRR4302536.850688/1‑94 (MQ=60)
                                                                              ATCCCGTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGGT                 >  SRR4302536.79944/1‑94 (MQ=60)
                                                                              ATCCCCTGCACCAGTCCCGCCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTT                 <  SRR4302536.3054469/94‑1 (MQ=60)
                                                                               TCCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTG                >  SRR4302536.205480/1‑94 (MQ=60)
                                                                                CCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGT               >  SRR4302536.2524585/1‑94 (MQ=60)
                                                                                CCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGT               >  SRR4302536.955309/1‑94 (MQ=60)
                                                                                CCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGT               >  SRR4302536.5783709/1‑94 (MQ=60)
                                                                                CCCCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGAAACGAGGCGCTACCGAGTTGT               >  SRR4302536.6753882/1‑94 (MQ=60)
                                                                                  CCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGCGGCGCTACCGAGATGTTC             >  SRR4302536.27711/1‑94 (MQ=60)
                                                                                  CCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTC             <  SRR4302536.2371932/94‑1 (MQ=60)
                                                                                  CCTGCACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTC             >  SRR4302536.854633/1‑94 (MQ=60)
                                                                                   CTGCACCAGTCCCGTCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCA            <  SRR4302536.2058558/94‑1 (MQ=60)
                                                                                      CACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATG         >  SRR4302536.6494533/1‑94 (MQ=60)
                                                                                       ACCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGC        >  SRR4302536.1861602/1‑94 (MQ=60)
                                                                                        CCAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCG       <  SRR4302536.802424/94‑1 (MQ=60)
                                                                                         CAGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGC      <  SRR4302536.6144022/94‑1 (MQ=60)
                                                                                          AGTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCT     >  SRR4302536.27414/1‑94 (MQ=60)
                                                                                           GTCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCTC    >  SRR4302536.5204167/1‑94 (MQ=60)
                                                                                            TCCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCTCG   >  SRR4302536.6454324/1‑94 (MQ=60)
                                                                                             CCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCTCGA  >  SRR4302536.2956350/1‑94 (MQ=60)
                                                                                             CCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCTCGA  >  SRR4302536.2466670/1‑94 (MQ=60)
                                                                                             |                                                                                             
GCCATCCAGATAGCCGTTACCAGCAACATTTTGCCCGACAGCATCCACAGATACGCCGCTGAACCGATAGTGAGAATGATCCCCTGCACCAGTTCCGGCAGACGCACAAAAGCAATGGTGATATTGCGCACATCGCTGGTTAACCCCGCCAGCAACGAGGCGCTACCGAGTTGTTCAATGCGCTCGA  >  NC_000913/2306163‑2306349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑