Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,327,687 |
A→G |
V44A (GTG→GCG) |
b2226 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,327,687 | 0 | A | G | 97.8%
| 419.7
/ ‑1.0
| 137 | V44A (GTG→GCG) | b2226 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/2); new base G (76/58); total (77/60) |
| Fisher's exact test for biased strand distribution p-value = 5.81e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.54e-01 |
Only 100 of 143 total aligned reads displayed.
TGGGTATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGTTGGCAG > NC_000913/2327597‑2327775
|
tGGGTATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTcgcg > 1:2195518/1‑93 (MQ=255)
tATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCtg > 1:4465819/1‑93 (MQ=255)
tATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCtg < 2:1310690/93‑1 (MQ=255)
aTCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCtga > 1:4623630/1‑93 (MQ=255)
aTCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCtga < 2:3814042/93‑1 (MQ=255)
tcctccAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCtgat < 1:977359/93‑1 (MQ=255)
cctccAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCtgatg < 1:2716616/93‑1 (MQ=255)
ctccAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCtgatga < 2:4291120/93‑1 (MQ=255)
ctccAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCtgatga > 2:4053607/1‑93 (MQ=255)
tccAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATgac > 1:966222/1‑93 (MQ=255)
tccAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATgac > 1:3416169/1‑93 (MQ=255)
cccagccagGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATgac < 1:2763124/92‑1 (MQ=255)
ccagccagGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATgacg > 1:3183457/1‑93 (MQ=255)
cagccagTCGTAAACATACAGTTTCCACAAACTCCCCAACGCCGTGTTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATgacga < 2:4284378/93‑1 (MQ=255)
cagccagGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATgacga > 1:2576787/1‑93 (MQ=255)
cagccagGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATgacga > 1:1748468/1‑93 (MQ=255)
ccagGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAg > 2:2229913/1‑93 (MQ=255)
cagGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGc < 2:4084967/93‑1 (MQ=255)
agGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCt > 1:3163707/1‑93 (MQ=255)
agGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCt > 2:1599610/1‑93 (MQ=255)
agGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCt > 1:158904/1‑93 (MQ=255)
ggCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTg < 2:3780224/93‑1 (MQ=255)
ggCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTg > 2:4608142/1‑93 (MQ=255)
ggCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTg > 1:552144/1‑93 (MQ=255)
gTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATa > 1:1091777/1‑93 (MQ=255)
tAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATAc > 2:4581575/1‑93 (MQ=255)
tAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATAc > 2:551194/1‑93 (MQ=255)
aaaCATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACa < 2:3099322/93‑1 (MQ=255)
aaCATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAg > 2:1311973/1‑93 (MQ=255)
aCATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGt < 1:4208978/93‑1 (MQ=255)
aCATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGt < 2:2166171/93‑1 (MQ=255)
aCATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGt < 2:742952/93‑1 (MQ=255)
cATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGtt < 2:83534/93‑1 (MQ=255)
cATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGtt < 2:3247840/93‑1 (MQ=255)
aTACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTg > 2:312801/1‑93 (MQ=255)
aTACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTg < 1:2990035/93‑1 (MQ=255)
tACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGa > 2:1278201/1‑93 (MQ=255)
tACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGa > 2:4149288/1‑93 (MQ=255)
tACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGa < 1:4517073/93‑1 (MQ=255)
cAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATc < 1:4005460/93‑1 (MQ=255)
cAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATc > 1:142560/1‑93 (MQ=255)
gTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGt > 2:2425747/1‑93 (MQ=255)
tttCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGtg > 2:2585203/1‑93 (MQ=255)
tCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGtgct < 2:192945/93‑1 (MQ=255)
cacaAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGtgctgc > 2:3074285/1‑93 (MQ=255)
cacaAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGtgctgc < 2:233950/93‑1 (MQ=255)
cacaAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGtgctgc > 1:4488776/1‑93 (MQ=255)
caAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTgcgc < 1:2871372/93‑1 (MQ=255)
caAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTgcgc > 1:3676993/1‑93 (MQ=255)
aaaCTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCa < 1:4132923/93‑1 (MQ=255)
aaaCTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCa < 1:469490/93‑1 (MQ=255)
aaCTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCAc > 2:4051922/1‑93 (MQ=255)
ccTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCgcgc < 1:1426889/93‑1 (MQ=255)
tAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCgcag > 2:4326322/1‑93 (MQ=255)
aCGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCATCGCgcacca > 2:2045159/1‑93 (MQ=255)
aCGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCgcagca > 2:4388392/1‑93 (MQ=255)
aCGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCgcagca > 1:1877856/1‑93 (MQ=255)
cGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCAc > 2:3300918/1‑93 (MQ=255)
ggCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCAcc < 2:2866711/93‑1 (MQ=255)
gCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCa > 2:3608837/1‑93 (MQ=255)
gCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCa > 2:4720078/1‑93 (MQ=255)
cGTGTTGAGCTAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAg < 2:1496676/93‑1 (MQ=255)
cGTGATGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCTCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAg < 1:4428532/93‑1 (MQ=255)
gtggtgAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGt > 1:2198281/1‑93 (MQ=255)
gtggtgAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGt > 1:3596379/1‑93 (MQ=255)
gtggtgAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGt > 1:3767678/1‑93 (MQ=255)
tggtgAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGtt > 2:629710/1‑93 (MQ=255)
ggtgAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTg < 1:3830858/93‑1 (MQ=255)
gAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTaa < 2:3194962/93‑1 (MQ=255)
gAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTaa > 1:816147/1‑93 (MQ=255)
gCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACg > 1:3288408/1‑93 (MQ=255)
gCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACg < 1:738265/93‑1 (MQ=255)
gCGAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACg < 2:3317548/93‑1 (MQ=255)
cGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACgg < 2:1017966/93‑1 (MQ=255)
cGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACgg < 1:169468/93‑1 (MQ=255)
cGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACgc > 1:665604/1‑92 (MQ=255)
tCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGtc < 2:2011950/93‑1 (MQ=255)
ggTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTctcc > 2:4634396/1‑93 (MQ=255)
gTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTctcct < 1:1845199/93‑1 (MQ=255)
gTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTctcct < 2:1207813/93‑1 (MQ=255)
tAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTctcctc < 2:3546022/93‑1 (MQ=255)
tAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTctcctc > 1:1382100/1‑93 (MQ=255)
tAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTctcctc > 1:790012/1‑93 (MQ=255)
tGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGc > 1:1891277/1‑93 (MQ=255)
tGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGc > 2:831905/1‑93 (MQ=255)
tGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGc > 2:831904/1‑93 (MQ=255)
gCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCa > 1:3907641/1‑93 (MQ=255)
cTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCaa < 2:733329/93‑1 (MQ=255)
gagaCTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAgg > 2:948916/1‑92 (MQ=255)
gagaCTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAgt > 2:3988221/1‑93 (MQ=255)
agaCTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAgtg > 2:2373168/1‑93 (MQ=255)
gaCTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAgtgt < 2:4572950/93‑1 (MQ=255)
gaCTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAgtgt > 1:1036266/1‑93 (MQ=255)
aCTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGtt < 2:2507159/93‑1 (MQ=255)
cTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGTTg > 2:430936/1‑93 (MQ=255)
cTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGTTg < 2:2725416/93‑1 (MQ=255)
cTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCCGCGCACCGCGCAGCACCAGTTGTAACGGCGGCTCCTCCGCCAGTGTTg > 1:1850713/1‑93 (MQ=255)
tttGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGTTgg > 2:2192318/1‑93 (MQ=255)
ttGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCCCCTCCGCAAGTGTTGGc > 1:3488102/1‑93 (MQ=255)
ggTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGTTGGCag > 1:3402458/1‑93 (MQ=255)
|
TGGGTATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGTTGGCAG > NC_000913/2327597‑2327775
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGATGGGTATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGTTGGCAG > NC_000913/2327594‑2327775
|
TGATGGGTATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCG > SRR4302544.2225798/1‑94 (MQ=60)
TGATGGGTATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCG > SRR4302544.1954369/1‑94 (MQ=60)
TGATGGGTATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCG < SRR4302544.3277862/94‑1 (MQ=60)
ATGGGTATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCG > SRR4302544.2216230/1‑94 (MQ=60)
GTATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTG > SRR4302544.4510751/1‑94 (MQ=60)
GTATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTG > SRR4302544.4510750/1‑94 (MQ=60)
TATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTTGTCGCGCCTGA > SRR4302544.796175/1‑94 (MQ=60)
TATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGA > SRR4302544.4669498/1‑94 (MQ=60)
TATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGA > SRR4302544.189475/1‑94 (MQ=60)
TCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATG < SRR4302544.986939/94‑1 (MQ=60)
CCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGA < SRR4302544.2742764/94‑1 (MQ=60)
CTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGAC > SRR4302544.3448820/1‑94 (MQ=60)
CTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGAC > SRR4302544.975699/1‑94 (MQ=60)
TCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACG > SRR4302544.3213754/1‑94 (MQ=60)
CCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACG < SRR4302544.2789700/94‑1 (MQ=60)
CCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGA > SRR4302544.1765585/1‑94 (MQ=60)
CCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGA > SRR4302544.2601540/1‑94 (MQ=60)
CAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGAC < SRR4302544.3279567/94‑1 (MQ=60)
CCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGC > SRR4302544.380938/1‑94 (MQ=60)
CAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCT > SRR4302544.3193798/1‑94 (MQ=60)
CAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCT > SRR4302544.160460/1‑94 (MQ=60)
AGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTG > SRR4302544.557546/1‑94 (MQ=60)
CGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATA > SRR4302544.1102639/1‑94 (MQ=60)
GTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATAC > SRR4302544.213195/1‑94 (MQ=60)
ACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTT < SRR4302544.4251282/94‑1 (MQ=60)
CATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTG < SRR4302544.2282811/94‑1 (MQ=60)
ATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGA < SRR4302544.3018712/94‑1 (MQ=60)
TACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGAT < SRR4302544.4562308/94‑1 (MQ=60)
ACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATC > SRR4302544.143913/1‑94 (MQ=60)
CAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCG < SRR4302544.4045319/94‑1 (MQ=60)
AGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGT < SRR4302544.4059054/94‑1 (MQ=60)
CCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGC > SRR4302544.4533854/1‑94 (MQ=60)
CCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGC > SRR4302544.1407650/1‑94 (MQ=60)
ACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGC > SRR4302544.3713668/1‑94 (MQ=60)
ACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGC > SRR4302544.3713669/1‑94 (MQ=60)
CAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCA < SRR4302544.2899088/94‑1 (MQ=60)
AAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCAC < SRR4302544.474082/94‑1 (MQ=60)
AAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCAC < SRR4302544.4173878/94‑1 (MQ=60)
AACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACC > SRR4302544.4684922/1‑94 (MQ=60)
TCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCG < SRR4302544.3027349/94‑1 (MQ=60)
CCTAGCGTCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCA < SRR4302544.4420909/94‑1 (MQ=60)
CCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCA < SRR4302544.1441082/94‑1 (MQ=60)
AACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCA > SRR4302544.1896015/1‑94 (MQ=60)
CGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGT > SRR4302544.2219000/1‑94 (MQ=60)
CGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGT > SRR4302544.3805039/1‑94 (MQ=60)
CGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGT > SRR4302544.3630987/1‑94 (MQ=60)
CGTGATGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCTCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGT < SRR4302544.4473215/94‑1 (MQ=60)
GGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGT < SRR4302544.3868842/94‑1 (MQ=60)
TGAGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAA > SRR4302544.824118/1‑94 (MQ=60)
AGCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACG > SRR4302544.3319741/1‑94 (MQ=60)
GCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGG < SRR4302544.745489/94‑1 (MQ=60)
GCGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGC > SRR4302544.672178/1‑94 (MQ=60)
CGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGC < SRR4302544.171138/94‑1 (MQ=60)
CGAGTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGC < SRR4302544.352173/94‑1 (MQ=60)
GTCAGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACCGCGTC > SRR4302544.979865/1‑94 (MQ=60)
AGGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCC > SRR4302544.1570916/1‑94 (MQ=60)
GGTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCT > SRR4302544.623566/1‑94 (MQ=60)
GTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTC < SRR4302544.1863076/94‑1 (MQ=60)
GTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTC > SRR4302544.797654/1‑94 (MQ=60)
GTAATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTC > SRR4302544.1395903/1‑94 (MQ=60)
ATGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGC > SRR4302544.1909547/1‑94 (MQ=60)
TGCTGAGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCA > SRR4302544.3946466/1‑94 (MQ=60)
AGACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGT > SRR4302544.1046569/1‑94 (MQ=60)
GACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGTT < SRR4302544.2808820/94‑1 (MQ=60)
ACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGTTG > SRR4302544.17437/1‑94 (MQ=60)
ACTTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCCGCGCACCGCGCAGCACCAGTTGTAACGGCGGCTCCTCCGCCAGTGTTG > SRR4302544.1868620/1‑94 (MQ=60)
TTTGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCCCCTCCGCAAGTGTTGGC > SRR4302544.3521357/1‑94 (MQ=60)
TGGTCGCGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGTTGGCAG > SRR4302544.3434989/1‑94 (MQ=60)
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TGATGGGTATCCTCCAGCCAGGCGTAAACATACAGTTTCCACAAACTCCCTAACGGCGTGGTGAGCGAGTCAGGTAATGCTGAGACTTTGGTCACGCCTGATGACGACAGCTGATACAGTTGATCGTGCTGCGCACCGCGCAGCACCAGTTGTAACGGCGTCTCCTCCGCAAGTGTTGGCAG > NC_000913/2327594‑2327775
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
