Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,349,989 |
T→C |
M136V (ATG→GTG) |
glpT ← |
sn‑glycerol‑3‑phosphate permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,349,989 | 0 | T | C | 96.7%
| 273.1
/ ‑1.4
| 92 | M136V (ATG→GTG) | glpT | sn‑glycerol‑3‑phosphate permease |
| Reads supporting (aligned to +/- strand): ref base T (0/3); new base C (41/48); total (41/51) |
| Fisher's exact test for biased strand distribution p-value = 2.51e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 |
Only 100 of 102 total aligned reads displayed.
GTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCA > NC_000913/2349900‑2350078
|
gtgCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCaccccacccc < 1:245215/93‑1 (MQ=255)
gcgcACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCt < 1:2403267/93‑1 (MQ=255)
cgcACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTg < 1:568290/93‑1 (MQ=255)
gcACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCATCCCCTgg < 2:4012100/93‑1 (MQ=255)
gcACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTgg < 1:701989/93‑1 (MQ=255)
cctcaGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCATCCCCTgg < 2:4012101/90‑1 (MQ=255)
cacaGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATCGTACGACCACACGGCGGCCACCCCACCCCCTGGa > 2:3173645/1‑93 (MQ=255)
cacaGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGa > 2:140399/1‑93 (MQ=255)
acaGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGaa > 2:3966244/1‑93 (MQ=255)
aGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATATTACGACCACACGGCGGCCACCCCACCCCCTGGaccc < 2:4724705/93‑1 (MQ=255)
aGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGaacc < 1:3555160/93‑1 (MQ=255)
aGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACAACCACACGGCGGCCACCCCACCCCCTGTaacc > 2:1609351/1‑93 (MQ=255)
aGTTCCACACTGACACAATGCCGCCACGTTCTGTCTGCGACCACCAGTGCACCATAGTAAGACCACACGGCGGCCACCCCACCCCCTCGaaca > 2:1609350/1‑92 (MQ=255)
gTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGaacca > 1:2846031/1‑93 (MQ=255)
ttCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGaaccaa > 1:2786213/1‑93 (MQ=255)
tCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCATCCCCTGGaaccaac < 1:4505283/93‑1 (MQ=255)
tCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGaaccaac < 1:163341/93‑1 (MQ=255)
tCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGaaccaac < 1:2076314/93‑1 (MQ=255)
tCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGaaccaac < 1:4167550/93‑1 (MQ=255)
tCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGaaccaac < 1:3657040/93‑1 (MQ=255)
ccACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGaaccaacc > 2:3147025/1‑93 (MQ=255)
ccACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGaaccaacc > 2:4445890/1‑93 (MQ=255)
cacaCTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCg > 2:2785098/1‑93 (MQ=255)
cacaCTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCg > 2:2785097/1‑93 (MQ=255)
cacaCTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCg < 1:2717054/93‑1 (MQ=255)
acTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCag < 2:2211268/93‑1 (MQ=255)
cTGACACAATGCCGCCTCGTTCTTTCTGCGACCACCAGTGCACCATAGTACGCCCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCaga < 2:2052414/93‑1 (MQ=255)
cTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCaga > 2:4451438/1‑93 (MQ=255)
tGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCagag < 2:3482719/93‑1 (MQ=255)
cgACACACTGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCagag < 1:2001376/92‑1 (MQ=255)
gACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAgg > 2:2918886/1‑93 (MQ=255)
gACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAgg < 2:4468791/93‑1 (MQ=255)
acacAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGTCCACACGGCGGGCACCCCACCCCCTGGAGCCAACCGCAGAGGa > 2:3999286/1‑93 (MQ=255)
caATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGaaca < 1:4055752/93‑1 (MQ=255)
aaTGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGaacaa < 2:3119481/93‑1 (MQ=255)
aaTGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGaacaa < 1:1191258/93‑1 (MQ=255)
aTGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGaacaac > 1:702/1‑93 (MQ=255)
tGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAacaaca < 2:3361950/93‑1 (MQ=255)
agccgccCCGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAacaaca < 1:2533412/92‑1 (MQ=255)
gccgccACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAg > 2:2693309/1‑93 (MQ=255)
gccgccACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAg < 1:4123762/93‑1 (MQ=255)
ccgccACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGt < 1:2398869/93‑1 (MQ=255)
cgccCCGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTa < 2:2088840/93‑1 (MQ=255)
cgccACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCCCCCCCTGGAACCAACCGCAGAGGAACAACAGTa < 1:3496573/93‑1 (MQ=255)
cgccACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTa < 1:797612/93‑1 (MQ=255)
cgccACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTa > 1:4576877/1‑93 (MQ=255)
cgccACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTa > 1:794222/1‑93 (MQ=255)
gccACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTAc > 1:3328362/1‑93 (MQ=255)
ccACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACa > 1:605596/1‑93 (MQ=255)
gTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCCCCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACa < 2:2884869/93‑1 (MQ=255)
gTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACa < 1:3642239/93‑1 (MQ=255)
ttctttctGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACac > 1:1213642/1‑92 (MQ=255)
ttctttctGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACAt > 2:1782126/1‑93 (MQ=255)
ctttctGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCa < 2:1762331/93‑1 (MQ=255)
ttctGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACGGTACAAACATCAcc < 2:1576562/93‑1 (MQ=255)
tctGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCg > 1:4034362/1‑93 (MQ=255)
tGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCa > 2:2993084/1‑93 (MQ=255)
cGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAAt < 2:3777638/93‑1 (MQ=255)
gACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATg > 1:3037497/1‑93 (MQ=255)
gACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATg < 2:3600278/93‑1 (MQ=255)
accaccAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGc > 2:1634956/1‑93 (MQ=255)
caccaGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTc < 2:4043672/93‑1 (MQ=255)
caccaGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTc > 1:3016525/1‑93 (MQ=255)
cccaGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCg < 2:1331511/92‑1 (MQ=255)
accaGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCg > 2:4449900/1‑93 (MQ=255)
ccaGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACGGTACAAACATCACCGCAATGCTCGa < 1:3989620/93‑1 (MQ=255)
ccaGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGa > 1:617919/1‑93 (MQ=255)
caGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGAc < 1:3720404/93‑1 (MQ=255)
aGTGCCCCATAGTACGACCTCACGGCGGCCCCCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACg < 1:1053662/93‑1 (MQ=255)
gTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACgc > 2:756399/1‑92 (MQ=255)
gTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGt < 1:1806028/93‑1 (MQ=255)
ggCACCATAGTACGACCACACGGCGGTCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTc < 1:2566135/92‑1 (MQ=255)
gCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCg > 1:1330551/1‑93 (MQ=255)
aCCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGcc < 1:2037548/93‑1 (MQ=255)
cATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCa < 2:3585953/93‑1 (MQ=255)
cATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCa < 1:2621701/93‑1 (MQ=255)
cATAGTACCACCCCACGGCGGCCACCCCCCCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCa < 1:2621702/93‑1 (MQ=255)
aTAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCAt > 1:94299/1‑93 (MQ=255)
gTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGc > 1:2016470/1‑93 (MQ=255)
cGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGcaca > 2:1947514/1‑93 (MQ=255)
cGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGcaaa > 2:3584943/1‑91 (MQ=255)
aCCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACaaa < 1:2638661/93‑1 (MQ=255)
aCCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACaaa > 2:2841016/1‑93 (MQ=255)
cacaCGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGc > 1:106464/1‑93 (MQ=255)
acacGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGcc > 1:1345527/1‑93 (MQ=255)
cacGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGccc < 1:2908388/93‑1 (MQ=255)
cacGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGccc < 1:1138387/93‑1 (MQ=255)
acGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCa > 2:168438/1‑93 (MQ=255)
ggcggcCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATa < 2:909352/93‑1 (MQ=255)
ggcggcCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATa < 2:1728443/93‑1 (MQ=255)
gcggcCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATaa < 1:259638/93‑1 (MQ=255)
caccccacccCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAaacaac < 2:428050/93‑1 (MQ=255)
cACCCCATCCGCTGGAACCAACCGCAAAAGAACAACAGTACAAACATCACCCCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAaacaac < 2:1578314/93‑1 (MQ=255)
accccaccccCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAacaaca > 2:1283587/1‑93 (MQ=255)
ccccACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACAt < 1:4743703/93‑1 (MQ=255)
cccACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATc > 2:2892827/1‑93 (MQ=255)
cccACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATc > 2:2388388/1‑93 (MQ=255)
cccACCCCCTGGAACCAACCGCAGAGGAACAACAGGACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATc > 2:3700819/1‑93 (MQ=255)
ccACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCa > 2:3473540/1‑93 (MQ=255)
ccACCCCATGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATCCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCa < 2:2705779/93‑1 (MQ=255)
|
GTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCA > NC_000913/2349900‑2350078
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTGC > NC_000913/2349896‑2350082
|
CGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC > SRR4302544.2222462/1‑94 (MQ=60)
GTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACC < SRR4302544.2245635/94‑1 (MQ=60)
TTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCC < SRR4302544.2240868/94‑1 (MQ=60)
GTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCC < SRR4302544.247779/94‑1 (MQ=60)
GCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTG < SRR4302544.2426075/94‑1 (MQ=60)
CGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGG < SRR4302544.573841/94‑1 (MQ=60)
GCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGA < SRR4302544.708978/94‑1 (MQ=60)
AGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCA < SRR4302544.3589229/94‑1 (MQ=60)
AGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCA > SRR4302544.2873521/1‑94 (MQ=60)
GTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAA > SRR4302544.2813026/1‑94 (MQ=60)
TCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCATCCCCTGGAACCAACC < SRR4302544.4550466/94‑1 (MQ=60)
TCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACC < SRR4302544.3693525/94‑1 (MQ=60)
TCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACC < SRR4302544.4208839/94‑1 (MQ=60)
TCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACC < SRR4302544.2096267/94‑1 (MQ=60)
TCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACC < SRR4302544.164937/94‑1 (MQ=60)
CACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGC < SRR4302544.2743204/94‑1 (MQ=60)
CGACACACTGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGG < SRR4302544.2020810/94‑1 (MQ=60)
CAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACAGGGCGGCAACCCCACCCCCTGGAACCAccagacgagagaaaa > SRR4302544.1092672/1‑79 (MQ=60)
CAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAA < SRR4302544.4096147/94‑1 (MQ=60)
AATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAAC > SRR4302544.710/1‑94 (MQ=60)
AATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAAC < SRR4302544.1203078/94‑1 (MQ=60)
AGCCGCCCCGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAG < SRR4302544.2557749/94‑1 (MQ=60)
GCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGT < SRR4302544.4164679/94‑1 (MQ=60)
CCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTA < SRR4302544.2421618/94‑1 (MQ=60)
CCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTA > SRR4302544.4622481/1‑94 (MQ=60)
CCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTA > SRR4302544.801907/1‑94 (MQ=60)
CGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCCCCCCCTGGAACCAACCGCAGAGGAACAACAGTAC < SRR4302544.3529913/94‑1 (MQ=60)
CGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTAC > SRR4302544.3360059/1‑94 (MQ=60)
CGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTAC < SRR4302544.805351/94‑1 (MQ=60)
GCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACA > SRR4302544.611540/1‑94 (MQ=60)
GTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACAT < SRR4302544.3678578/94‑1 (MQ=60)
GTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACAC > SRR4302544.1225656/1‑94 (MQ=60)
TTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCG > SRR4302544.4074549/1‑94 (MQ=60)
CGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATG > SRR4302544.3066571/1‑94 (MQ=60)
CCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTC > SRR4302544.3045445/1‑94 (MQ=60)
ACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGA > SRR4302544.623987/1‑94 (MQ=60)
CCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACGGTACAAACATCACCGCAATGCTCGAC < SRR4302544.4029335/94‑1 (MQ=60)
CAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACG < SRR4302544.3757409/94‑1 (MQ=60)
AGTGCCCCATAGTACGACCTCACGGCGGCCCCCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGT < SRR4302544.1064106/94‑1 (MQ=60)
GTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTC < SRR4302544.1823678/94‑1 (MQ=60)
TGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCG > SRR4302544.1343644/1‑94 (MQ=60)
GGCACCATAGTACGACCACACGGCGGTCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCG < SRR4302544.2590789/94‑1 (MQ=60)
ACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCC < SRR4302544.2057230/94‑1 (MQ=60)
CATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCAT > SRR4302544.95169/1‑94 (MQ=60)
CATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCAT < SRR4302544.2646845/94‑1 (MQ=60)
CATAGTACCACCCCACGGCGGCCACCCCCCCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCAT < SRR4302544.2646846/94‑1 (MQ=60)
AGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGC > SRR4302544.2036057/1‑94 (MQ=60)
ACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAG < SRR4302544.2663954/94‑1 (MQ=60)
CCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGC > SRR4302544.107438/1‑94 (MQ=60)
CACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCC > SRR4302544.1358843/1‑94 (MQ=60)
CACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCA < SRR4302544.2936373/94‑1 (MQ=60)
CACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCA < SRR4302544.1149707/94‑1 (MQ=60)
GCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAA < SRR4302544.262385/94‑1 (MQ=60)
CCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATC < SRR4302544.4790451/94‑1 (MQ=60)
CACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACT < SRR4302544.3961589/94‑1 (MQ=60)
CCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTGC > SRR4302544.4514520/1‑94 (MQ=60)
CCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTGC < SRR4302544.1083790/94‑1 (MQ=60)
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CGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTGC > NC_000913/2349896‑2350082
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
