Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1475 |
266.7 |
13469680 |
98.2% |
13227225 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,349,989 |
T→C |
M136V (ATG→GTG) |
glpT ← |
sn‑glycerol‑3‑phosphate permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,349,989 | 0 | T | C | 99.5%
| 625.6
/ ‑4.7
| 196 | M136V (ATG→GTG) | glpT | sn‑glycerol‑3‑phosphate permease |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (87/108); total (87/109) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 |
Only 100 of 216 total aligned reads displayed.
TGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCA > NC_000913/2349899‑2350078
|
tgtgCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCCCCCCAccc > 2:5579389/1‑93 (MQ=255)
gtgCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCaccccacccc > 2:1555264/1‑93 (MQ=255)
tgCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACcccc < 2:6554682/93‑1 (MQ=255)
tgCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACcccc < 2:441627/93‑1 (MQ=255)
tgCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACcccc < 2:2342078/93‑1 (MQ=255)
tgCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACcccc < 2:1931025/93‑1 (MQ=255)
cgcACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTg < 1:2120132/93‑1 (MQ=255)
gcACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTgg < 1:1795051/93‑1 (MQ=255)
acaGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCGCACGGCGGCCACCCCACCCCCTGGaa < 2:845273/93‑1 (MQ=255)
gTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGAACACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGaacca > 2:5871988/1‑93 (MQ=255)
ttCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGaaccaa < 1:4749138/93‑1 (MQ=255)
cacaCTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCg < 2:1915158/93‑1 (MQ=255)
cacaCTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCg > 2:716299/1‑93 (MQ=255)
cacaCTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCg > 1:4247563/1‑93 (MQ=255)
cacaCTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCg > 1:1331408/1‑93 (MQ=255)
acacTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGACCACCCCACCCCCTGGAACCAACCGc > 2:6624127/1‑93 (MQ=255)
acTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCag > 1:2201187/1‑93 (MQ=255)
cTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGTCACCCCACCCCCTGGACCCAACCGCaga > 1:2878769/1‑93 (MQ=255)
cTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCaga < 2:3763497/93‑1 (MQ=255)
cTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCaga > 1:2044489/1‑93 (MQ=255)
tGACACAATGCCGCCACGTTCTTTCTGTGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCagag < 1:3709652/93‑1 (MQ=255)
tGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCagag < 1:5518021/93‑1 (MQ=255)
acacAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCCGAGGa > 1:2914461/1‑93 (MQ=255)
acacAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGa > 1:6206636/1‑93 (MQ=255)
acacAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGa < 2:3153815/93‑1 (MQ=255)
cacaATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGaa < 1:4334004/93‑1 (MQ=255)
cacaATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGaa > 1:3330195/1‑93 (MQ=255)
caATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGaaca > 2:2483423/1‑93 (MQ=255)
caATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGaaca > 1:4964030/1‑93 (MQ=255)
aTGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGaacaac > 2:5319914/1‑93 (MQ=255)
aTGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGaacaac < 2:1454737/93‑1 (MQ=255)
aTGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGaacaac > 1:826876/1‑93 (MQ=255)
tGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAacaaca > 2:1142591/1‑93 (MQ=255)
tGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAacaaca < 1:5140701/93‑1 (MQ=255)
ccgccACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGt < 2:6359605/93‑1 (MQ=255)
cgccACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTa < 1:6224942/93‑1 (MQ=255)
cgccACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTa < 2:683301/93‑1 (MQ=255)
gccACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTAc > 2:5802010/1‑93 (MQ=255)
cACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTAcca > 1:4849395/1‑91 (MQ=255)
aCGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGTACAACAGTACaaa > 1:4002584/1‑93 (MQ=255)
aCGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACaaa > 2:4563297/1‑93 (MQ=255)
cGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAAc > 2:4004954/1‑93 (MQ=255)
cGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAAc < 2:2960672/93‑1 (MQ=255)
gTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACa > 2:13657/1‑93 (MQ=255)
gTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACa < 2:4518554/93‑1 (MQ=255)
gTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACa > 2:4833035/1‑93 (MQ=255)
gTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACa < 1:1211918/93‑1 (MQ=255)
ttctttctGCGACCACCAGTGCACCATATTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACAt < 2:4074850/93‑1 (MQ=255)
ttctttctGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACAt > 1:2324156/1‑93 (MQ=255)
tttctGCGACGACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGAAACAACAGTACAAACATCAc < 1:1874730/93‑1 (MQ=255)
tttctGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCAc > 2:596781/1‑93 (MQ=255)
tttctGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCAc < 2:6468408/93‑1 (MQ=255)
ttctGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCAcc < 1:2440758/93‑1 (MQ=255)
ttctGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCAcc < 2:3036776/93‑1 (MQ=255)
gCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCaa < 2:4327913/93‑1 (MQ=255)
gCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCaa > 1:1720577/1‑93 (MQ=255)
cGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCGGAGGAACAACAGTACAAACATCACCGCAAt < 1:4097017/93‑1 (MQ=255)
gccaccaGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGc < 2:2043665/92‑1 (MQ=255)
ccaccaGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCt < 2:2787098/93‑1 (MQ=255)
ccaccaGGGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGCACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCt > 2:3391967/1‑93 (MQ=255)
caccaGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTc > 2:4892982/1‑93 (MQ=255)
caccaGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTc < 2:5658546/93‑1 (MQ=255)
caccaGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTc < 1:2667858/93‑1 (MQ=255)
caccaGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTc > 2:3283837/1‑93 (MQ=255)
accaGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCg > 1:3264534/1‑93 (MQ=255)
caGTGCACCATAGTACGACCACACGGCGGCCCCCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGAc < 1:6153018/93‑1 (MQ=255)
caGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGAc > 2:4812769/1‑93 (MQ=255)
caGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGAc < 2:2656437/93‑1 (MQ=255)
caGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGAc < 2:3310967/93‑1 (MQ=255)
aGTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACg < 1:4419302/93‑1 (MQ=255)
gTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGt > 2:815464/1‑93 (MQ=255)
gTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGt < 1:4891799/93‑1 (MQ=255)
gTGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGt > 2:1655791/1‑93 (MQ=255)
tGCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTc < 2:2108738/93‑1 (MQ=255)
gCACCATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCg > 1:1380929/1‑93 (MQ=255)
ccATAGAACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGccc < 1:3434993/93‑1 (MQ=255)
cATAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTGCAAACATCACCGCAATGCTCGACGTCGCCCa < 1:6272601/93‑1 (MQ=255)
aTAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCAt > 1:3533628/1‑93 (MQ=255)
aTAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCAt < 2:5643071/93‑1 (MQ=255)
tAGTACGACCACACGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATg < 1:2828736/93‑1 (MQ=255)
aGTACGACCACGCGGCGGCCACCCCGACCCCTGGAACCAGCCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATgg < 2:2579945/93‑1 (MQ=255)
ccGACCCCACGGCGCCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGcac < 1:6464541/92‑1 (MQ=255)
cacaCGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGc < 1:5358697/93‑1 (MQ=255)
cacGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGccc > 2:4151528/1‑93 (MQ=255)
cacGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGccc > 2:6304902/1‑93 (MQ=255)
cacGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGccc < 2:5429002/93‑1 (MQ=255)
cacGGCGGCCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGAAATGCTCGACGTCGCACATGCCACAAAGcca > 1:4999495/1‑92 (MQ=255)
cggcCACCCCACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATaaa < 1:3793469/93‑1 (MQ=255)
ccaccccaccCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAaacaa < 1:1089671/93‑1 (MQ=255)
ccaccccaccCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAaacaa < 2:6111767/93‑1 (MQ=255)
accccaccccCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAacaaca > 1:3892865/1‑93 (MQ=255)
accccaccccCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAacaaca < 1:6691773/93‑1 (MQ=255)
accccaccccCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAacaaca > 2:1864725/1‑93 (MQ=255)
accccaccccCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAacaaca > 2:1772786/1‑93 (MQ=255)
accccaccccCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAacaaca < 1:2401144/93‑1 (MQ=255)
accccaccccCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAacaaca > 1:800506/1‑93 (MQ=255)
ccccATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACAt < 1:3051981/93‑1 (MQ=255)
ccccACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACAt > 2:1238987/1‑93 (MQ=255)
cccACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATc < 2:6014473/93‑1 (MQ=255)
ccACCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCa > 2:2989661/1‑93 (MQ=255)
|
TGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCATCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCA > NC_000913/2349899‑2350078
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAT‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTGC > NC_000913/2349896‑2350082
|
CGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCTGCCACCCCAC > SRR4302536.5723589/1‑94 (MQ=60)
CGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC > SRR4302536.2622109/1‑94 (MQ=60)
CGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC > SRR4302536.4538818/1‑94 (MQ=60)
CGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC > SRR4302536.2552628/1‑94 (MQ=60)
CGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC < SRR4302536.4585606/94‑1 (MQ=60)
GTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑C < SRR4302536.4164069/94‑1 (MQ=60)
TGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCC < SRR4302536.4914765/94‑1 (MQ=60)
TGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCT < SRR4302536.808403/94‑1 (MQ=60)
TGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCT < SRR4302536.2647374/94‑1 (MQ=60)
CGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCCC‑CCCCTGG < SRR4302536.6577340/94‑1 (MQ=60)
CGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGG < SRR4302536.2183843/94‑1 (MQ=60)
GCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGA > SRR4302536.4088263/1‑94 (MQ=60)
GCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGA < SRR4302536.1849242/94‑1 (MQ=60)
CACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAA < SRR4302536.2355163/94‑1 (MQ=60)
CAGTCCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACC < SRR4302536.5578851/94‑1 (MQ=60)
TTCCACTCTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAAC < SRR4302536.1823937/94‑1 (MQ=60)
TTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAAC < SRR4302536.4892068/94‑1 (MQ=60)
CCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCG > SRR4302536.2487797/1‑94 (MQ=60)
CCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCG > SRR4302536.4374084/1‑94 (MQ=60)
CCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCG > SRR4302536.1371153/1‑94 (MQ=60)
CACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGC > SRR4302536.3840539/1‑94 (MQ=60)
CACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGC < SRR4302536.3067660/94‑1 (MQ=60)
CACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAG > SRR4302536.2267638/1‑94 (MQ=60)
ACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGTCACCCCAC‑CCCCTGGACCCAACCGCAGA > SRR4302536.2963740/1‑94 (MQ=60)
ACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGA > SRR4302536.2106047/1‑94 (MQ=60)
ACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGA > SRR4302536.3341798/1‑94 (MQ=60)
TGACACAATGCCGCCACGTTCTTTCTGTGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGG < SRR4302536.3820553/94‑1 (MQ=60)
TGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGG > SRR4302536.4337493/1‑94 (MQ=60)
TGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGG < SRR4302536.5682587/94‑1 (MQ=60)
GACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCCGAGGA > SRR4302536.3000494/1‑94 (MQ=60)
GACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGA > SRR4302536.6391549/1‑94 (MQ=60)
ACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAA > SRR4302536.3428753/1‑94 (MQ=60)
CACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAAC < SRR4302536.4463806/94‑1 (MQ=60)
ACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACA > SRR4302536.5113151/1‑94 (MQ=60)
AATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGCACCAACCGCAGAGGAACAAC > SRR4302536.1158507/1‑94 (MQ=60)
AATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAAC > SRR4302536.851223/1‑94 (MQ=60)
ATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACA < SRR4302536.2147641/94‑1 (MQ=60)
TGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAG < SRR4302536.5294147/94‑1 (MQ=60)
TGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAG < SRR4302536.2817938/94‑1 (MQ=60)
GCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGT < SRR4302536.5148664/94‑1 (MQ=60)
CGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTAC < SRR4302536.6410416/94‑1 (MQ=60)
CGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTAC > SRR4302536.5025921/1‑94 (MQ=60)
GCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACA < SRR4302536.3990127/94‑1 (MQ=60)
CCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACCA > SRR4302536.4995315/1‑94 (MQ=60)
CCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAA > SRR4302536.5065667/1‑94 (MQ=60)
CACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGTACAACAGTACAAA > SRR4302536.4121353/1‑94 (MQ=60)
GTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACAT > SRR4302536.2394685/1‑94 (MQ=60)
GTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACAT < SRR4302536.1248332/94‑1 (MQ=60)
GTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACAT > SRR4302536.2216351/1‑94 (MQ=60)
TCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCA < SRR4302536.2047772/94‑1 (MQ=60)
TTTCTGCGACGACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGAAACAACAGTACAAACATCACC < SRR4302536.1931149/94‑1 (MQ=60)
TTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCCC‑CCCCTGGAACCACCCGCAGAGGAACAACAGTACAAACATCCCC < SRR4302536.3572180/94‑1 (MQ=60)
TTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCG < SRR4302536.2514521/94‑1 (MQ=60)
TGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAA > SRR4302536.1770296/1‑94 (MQ=60)
GCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAAT < SRR4302536.616940/94‑1 (MQ=60)
CGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCGGAGGAACAACAGTACAAACATCACCGCAATG < SRR4302536.4218496/94‑1 (MQ=60)
CGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATG < SRR4302536.2937262/94‑1 (MQ=60)
GACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGC > SRR4302536.5036207/1‑94 (MQ=60)
ACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCT < SRR4302536.2456529/94‑1 (MQ=60)
CCACCAGTGCACCATAGTACGACCACACGGCGGGCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACGGTACAAACATCACCccaaagtta > SRR4302536.2260599/1‑85 (MQ=60)
CACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCG > SRR4302536.3360343/1‑94 (MQ=60)
CACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCG < SRR4302536.2747653/94‑1 (MQ=60)
ACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCGGAGGAACAACAGTACAAACATCACCGCAATGCTCGA > SRR4302536.409257/1‑94 (MQ=60)
ACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGA > SRR4302536.3370132/1‑94 (MQ=60)
CCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGAC < SRR4302536.847090/94‑1 (MQ=60)
CCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGAC < SRR4302536.722427/94‑1 (MQ=60)
CAGTGCACCATAGTACGACCACACGGCGGCCCCCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACG < SRR4302536.6336333/94‑1 (MQ=60)
CAGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACG > SRR4302536.1736544/1‑94 (MQ=60)
AGTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGT < SRR4302536.4551632/94‑1 (MQ=60)
GTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTC < SRR4302536.5038942/94‑1 (MQ=60)
GTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTC < SRR4302536.6340602/94‑1 (MQ=60)
GTGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTC < SRR4302536.1265780/94‑1 (MQ=60)
ATGCACCATAGTACGACCCCACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTC < SRR4302536.4530500/94‑1 (MQ=60)
TGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCG < SRR4302536.3735016/94‑1 (MQ=60)
TGCACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCG > SRR4302536.1422068/1‑94 (MQ=60)
CCCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCC < SRR4302536.6393686/94‑1 (MQ=60)
ACCATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCACCC > SRR4302536.5801845/1‑94 (MQ=60)
CCATAGAACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCA < SRR4302536.3537262/94‑1 (MQ=60)
CATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTGCAAACATCACCGCAATGCTCGACGTCGCCCAT < SRR4302536.6459484/94‑1 (MQ=60)
CATAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCAT > SRR4302536.3639234/1‑94 (MQ=60)
TAGTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGG < SRR4302536.2912487/94‑1 (MQ=60)
GTACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCA < SRR4302536.2973834/94‑1 (MQ=60)
TACGACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCAC < SRR4302536.1878043/94‑1 (MQ=60)
CCGACCCCACGGCGCCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACA < SRR4302536.6657509/94‑1 (MQ=60)
GACCACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAA > SRR4302536.3485971/1‑94 (MQ=60)
CCACACGGCGGCCACCCCAC‑ACCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGC > SRR4302536.6737943/1‑94 (MQ=60)
CACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCC > SRR4302536.4380310/1‑94 (MQ=60)
CACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCC > SRR4302536.4157137/1‑94 (MQ=60)
CACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCC < SRR4302536.5518586/94‑1 (MQ=60)
ACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTTGACGTCGCCCAT‑GCACAAAGCCCA > SRR4302536.4721226/1‑94 (MQ=60)
ACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGGCCATGGCACAAAGCCC > SRR4302536.1974115/1‑94 (MQ=60)
ACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCC < SRR4302536.2648772/94‑1 (MQ=60)
ACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGACCATGGCACAAAGCCC > SRR4302536.1976126/1‑94 (MQ=60)
ACACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGAAATGCTCGACGTCGCACATGCCACAAAGCCA > SRR4302536.5149521/1‑94 (MQ=60)
CACGGCGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCA < SRR4302536.1389187/94‑1 (MQ=60)
CGGCCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAAC < SRR4302536.3906634/94‑1 (MQ=60)
CCACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAAC < SRR4302536.1122345/94‑1 (MQ=60)
CACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACA > SRR4302536.823977/1‑94 (MQ=60)
CACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACA > SRR4302536.4008610/1‑94 (MQ=60)
ACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACAT > SRR4302536.6445769/1‑94 (MQ=60)
ACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACAT < SRR4302536.6890520/94‑1 (MQ=60)
ACCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACAT < SRR4302536.2473811/94‑1 (MQ=60)
CCCCAT‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATC < SRR4302536.3141620/94‑1 (MQ=60)
CCCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATC > SRR4302536.5236170/1‑94 (MQ=60)
CCCATCCCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCTCCGCAATGCTAGACGTCGCCCATGGCACAAAGCCCATAAACAACATC < SRR4302536.4900803/94‑1 (MQ=60)
CCCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCA < SRR4302536.3427669/94‑1 (MQ=60)
CCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCAC < SRR4302536.5342929/94‑1 (MQ=60)
CCAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCAC > SRR4302536.3892620/1‑94 (MQ=60)
CAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACT < SRR4302536.2183096/94‑1 (MQ=60)
CAC‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACT < SRR4302536.4379238/94‑1 (MQ=60)
C‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTGC < SRR4302536.5910686/94‑1 (MQ=60)
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CGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTACGACCACACGGCGGCCACCCCAT‑CCCCTGGAACCAACCGCAGAGGAACAACAGTACAAACATCACCGCAATGCTCGACGTCGCCCATGGCACAAAGCCCATAAACAACATCACTGC > NC_000913/2349896‑2350082
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
