Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,391,348 |
A→G |
A573A (GCT→GCC) |
nuoL ← |
NADH dehydrogenase I chain L |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,391,348 | 0 | A | G | 97.6%
| 380.6
/ ‑1.0
| 125 | A573A (GCT→GCC) | nuoL | NADH dehydrogenase I chain L |
| Reads supporting (aligned to +/- strand): ref base A (1/2); new base G (67/55); total (68/57) |
| Fisher's exact test for biased strand distribution p-value = 5.91e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 |
Only 100 of 129 total aligned reads displayed.
CGACCGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAG > NC_000913/2391257‑2391437
|
cGACCGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAg < 2:2154844/93‑1 (MQ=255)
gACCGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCATACCTTTACCTGCAAAGCGGGAAAGGACGGc > 1:3568082/1‑93 (MQ=255)
gACCGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGc > 2:633142/1‑93 (MQ=255)
gACCGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGc < 2:4326121/93‑1 (MQ=255)
gACCGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGc < 2:106220/93‑1 (MQ=255)
aCCGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGcc > 1:4134191/1‑93 (MQ=255)
ccGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCg < 1:953348/93‑1 (MQ=255)
cGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCgg > 2:412552/1‑93 (MQ=255)
gCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCggg > 1:4442828/1‑93 (MQ=255)
gtccGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCTCTTAACAGCAGAGCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGa < 2:3183837/91‑1 (MQ=255)
aCCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGAt < 1:3110187/93‑1 (MQ=255)
aCCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGAt < 1:2166450/93‑1 (MQ=255)
ccGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATg < 2:3884681/93‑1 (MQ=255)
cGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGt > 2:3015529/1‑93 (MQ=255)
cGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGt > 2:3015530/1‑93 (MQ=255)
aTGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGCtc > 2:1991043/1‑93 (MQ=255)
tGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTtca < 2:3098554/93‑1 (MQ=255)
ggCTCATAGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTtca > 2:2882108/2‑93 (MQ=255)
cTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTtcatc < 2:4494437/93‑1 (MQ=255)
cATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTcatcat > 2:3476029/1‑93 (MQ=255)
gATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAg < 2:2415033/93‑1 (MQ=255)
cacaTACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAg > 1:1215632/1‑93 (MQ=255)
cacaTACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAg < 2:4044056/93‑1 (MQ=255)
acaTACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGc > 1:1266867/1‑93 (MQ=255)
tACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGa > 2:117429/1‑93 (MQ=255)
ccAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATc < 1:2517690/93‑1 (MQ=255)
cAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATcg > 2:280145/1‑93 (MQ=255)
aGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATcgc < 1:3613689/93‑1 (MQ=255)
gcAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCACAGGATCGCAtt > 1:4108202/1‑93 (MQ=255)
aGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTc > 1:650955/1‑93 (MQ=255)
aGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTc > 2:4608426/1‑93 (MQ=255)
gATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCa > 1:1476938/1‑93 (MQ=255)
gATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCa > 1:3925000/1‑93 (MQ=255)
gATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCa < 1:3948636/93‑1 (MQ=255)
gATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCa < 2:771072/93‑1 (MQ=255)
tAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGc > 1:1719780/1‑93 (MQ=255)
aaGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGc < 1:2739361/92‑1 (MQ=255)
ccGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAAc < 2:802205/93‑1 (MQ=255)
ttCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAg > 2:3856901/1‑93 (MQ=255)
tctcACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAgg > 1:1471852/1‑93 (MQ=255)
ctcACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGc > 2:636704/1‑93 (MQ=255)
cACTTAACAGCAGGCCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCaa < 2:3848583/93‑1 (MQ=255)
cACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCaa < 1:4161408/93‑1 (MQ=255)
cACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCaa < 1:1029426/93‑1 (MQ=255)
aCTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAAt < 1:3296403/93‑1 (MQ=255)
aCTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAAt < 2:1121573/93‑1 (MQ=255)
cTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATa < 1:2744964/93‑1 (MQ=255)
cTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATa < 2:1266867/93‑1 (MQ=255)
cTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATa < 2:882160/93‑1 (MQ=255)
ttAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATAc > 1:2634549/1‑93 (MQ=255)
ttAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATAc > 2:1422856/1‑93 (MQ=255)
ttAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGAGGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACACGCCAATAc > 1:2634547/1‑93 (MQ=255)
aaCAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATAccc < 1:295764/93‑1 (MQ=255)
aaCAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATAccc < 2:2200369/93‑1 (MQ=255)
aCAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCa < 2:330473/93‑1 (MQ=255)
aCAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCa > 2:1403669/1‑93 (MQ=255)
cagcagACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAg > 1:1149864/1‑93 (MQ=255)
cagcagACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAg < 1:1925026/93‑1 (MQ=255)
ataagACCTTTACCAGCCAAACGAGATAGGACAGCCGGGATGTTCATCATTGAGCTCAGCGGATCGCGTTCAACCAACAAGGCAATACCCAgg > 2:3331541/4‑93 (MQ=255)
gcagACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGa > 1:597291/1‑93 (MQ=255)
cagACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGaa < 1:4358080/93‑1 (MQ=255)
gACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACg > 1:1788638/1‑93 (MQ=255)
gACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACg > 1:2060372/1‑93 (MQ=255)
gACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACg > 1:3539775/1‑93 (MQ=255)
gACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATATTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACg > 2:4149846/1‑93 (MQ=255)
aCCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACgg < 1:3848063/93‑1 (MQ=255)
aCCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACgg > 1:4632728/1‑93 (MQ=255)
aCCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACgg > 1:2887155/1‑93 (MQ=255)
aCCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACgg < 2:2203913/93‑1 (MQ=255)
aCCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACgg < 2:889802/93‑1 (MQ=255)
ccTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGc < 1:2622161/93‑1 (MQ=255)
cTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATGCCCAGGAACGGCt < 2:2224038/93‑1 (MQ=255)
cTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCt < 2:3956234/93‑1 (MQ=255)
tttACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCtt > 2:2115229/1‑93 (MQ=255)
tttACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCtt > 1:855845/1‑93 (MQ=255)
tttACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCtt > 2:2300295/1‑93 (MQ=255)
tttACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCtt > 2:1639521/1‑93 (MQ=255)
ttACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTg < 1:1714005/93‑1 (MQ=255)
aCCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGAc > 2:3310072/1‑93 (MQ=255)
aCCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGAc > 1:3298912/1‑93 (MQ=255)
ccTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACg > 1:4240877/1‑93 (MQ=255)
ccTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTAAGCAACCAGGCAATACCCACGAACGGCTTGACg > 1:2739059/1‑93 (MQ=255)
cTGCAAAGCGGGAAAGGACGGCCGGGATTTTCATCATTGAGTTCAGCGGATCGAGTTTCAGCAACCAGGCAATACCCAGCAACGGCTTgcaca > 1:4404681/1‑89 (MQ=255)
cTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGa > 2:2654762/1‑93 (MQ=255)
tGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGaa < 2:3432762/93‑1 (MQ=255)
aaaGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAacac < 1:70325/93‑1 (MQ=255)
aGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACtt > 2:531565/1‑93 (MQ=255)
aGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCGTGACGAACACtt > 1:3351348/1‑93 (MQ=255)
gggAAAGTACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGt < 2:3374841/93‑1 (MQ=255)
gggAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGt < 2:358295/93‑1 (MQ=255)
ggAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTc > 2:60670/1‑93 (MQ=255)
gAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCa > 1:4234783/1‑93 (MQ=255)
gAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCa < 2:2177346/93‑1 (MQ=255)
aaaGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCAt > 1:3175245/1‑93 (MQ=255)
aGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATAc > 2:4366644/1‑93 (MQ=255)
aGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATAc > 2:672777/1‑93 (MQ=255)
aGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATAc < 2:2009624/93‑1 (MQ=255)
ggACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACa < 1:2349107/93‑1 (MQ=255)
gACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAg > 1:3572651/1‑93 (MQ=255)
gACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAg < 1:1206083/93‑1 (MQ=255)
|
CGACCGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAG > NC_000913/2391257‑2391437
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACGACCGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCA > NC_000913/2391256‑2391440
|
ACGACCGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGG < SRR4302544.1590593/94‑1 (MQ=60)
CGACCGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCATACCTTTACCTGCAAAGCGGGAAAGGACGGC > SRR4302544.3602294/1‑94 (MQ=60)
GACCGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCC > SRR4302544.4175151/1‑94 (MQ=60)
CCGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGG < SRR4302544.962720/94‑1 (MQ=60)
CGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGG > SRR4302544.4487612/1‑94 (MQ=60)
ACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATG < SRR4302544.3139782/94‑1 (MQ=60)
ACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATG < SRR4302544.2187012/94‑1 (MQ=60)
ATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTT > SRR4302544.4220057/1‑94 (MQ=60)
CCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAG > SRR4302544.1227665/1‑94 (MQ=60)
CACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGC > SRR4302544.1279322/1‑94 (MQ=60)
CCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCG < SRR4302544.2541868/94‑1 (MQ=60)
AGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCG < SRR4302544.3649180/94‑1 (MQ=60)
CGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCACAGGATCGCATT > SRR4302544.4149046/1‑94 (MQ=60)
CAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTC > SRR4302544.657396/1‑94 (MQ=60)
CAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTC > SRR4302544.3787014/1‑94 (MQ=60)
AGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCA > SRR4302544.1491545/1‑94 (MQ=60)
AGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCA > SRR4302544.3963988/1‑94 (MQ=60)
GATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAG < SRR4302544.3987878/94‑1 (MQ=60)
ATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGC > SRR4302544.1736679/1‑94 (MQ=60)
AAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCA < SRR4302544.2765770/94‑1 (MQ=60)
CGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCA > SRR4302544.266381/1‑94 (MQ=60)
ctgcgtcctgacccacagcccttgacgtgcaacgcgtGAAAGGACGGCCGGGATGTTCATCATTGAGGTCAGCGGATCGCGTTTCAGCAACCAG < SRR4302544.1999155/57‑1 (MQ=60)
TTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGG > SRR4302544.1486427/1‑94 (MQ=60)
CTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCA > SRR4302544.3544501/1‑94 (MQ=60)
TCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTGCAGCGGATCGCGTTTCAGCAACCAGGCAA > SRR4302544.647323/1‑94 (MQ=60)
CACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAAT < SRR4302544.4202630/94‑1 (MQ=60)
CACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAAT < SRR4302544.1039686/94‑1 (MQ=60)
ACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATA < SRR4302544.3327797/94‑1 (MQ=60)
CTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATAC > SRR4302544.2659799/1‑94 (MQ=60)
CTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATAC < SRR4302544.2771413/94‑1 (MQ=60)
CTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGAGGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACacgccaatac > SRR4302544.2659797/1‑84 (MQ=60)
AACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCA < SRR4302544.298822/94‑1 (MQ=60)
ACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAG > SRR4302544.1161302/1‑94 (MQ=60)
CAGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGG < SRR4302544.1943650/94‑1 (MQ=60)
AGCAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGA > SRR4302544.603145/1‑94 (MQ=60)
CAGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAAC < SRR4302544.4402317/94‑1 (MQ=60)
AGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACG > SRR4302544.3573645/1‑94 (MQ=60)
AGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACG > SRR4302544.1806121/1‑94 (MQ=60)
AGACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACG > SRR4302544.2080187/1‑94 (MQ=60)
GACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGG > SRR4302544.2914998/1‑94 (MQ=60)
GACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGG > SRR4302544.4678646/1‑94 (MQ=60)
GACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGG > SRR4302544.2914997/1‑94 (MQ=60)
ACCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGC < SRR4302544.3886251/94‑1 (MQ=60)
CCTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCT < SRR4302544.2647308/94‑1 (MQ=60)
CTTTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTT > SRR4302544.864312/1‑94 (MQ=60)
TTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGA < SRR4302544.3227647/94‑1 (MQ=60)
TTACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGA < SRR4302544.1730864/94‑1 (MQ=60)
TACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGAC < SRR4302544.1951834/94‑1 (MQ=60)
TACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGAC < SRR4302544.4451335/94‑1 (MQ=60)
TACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGAC > SRR4302544.3330335/1‑94 (MQ=60)
ACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACG > SRR4302544.4284099/1‑94 (MQ=60)
ACCTGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTAAGCAACCAGGCAATACCCACGAACGGCTTGACG > SRR4302544.2765464/1‑94 (MQ=60)
CCTGCAAAGCGGGAAAGGACGGCCGGGATTTTCATCATTGAGTTCAGCGGATCGAGTTTCAGCAACCAGGCAATACCCAGCAACGGCTTGcaca > SRR4302544.4449171/1‑90 (MQ=60)
TGCAAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAAC < SRR4302544.1254050/94‑1 (MQ=60)
AAAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACT < SRR4302544.71011/94‑1 (MQ=60)
AAGCGGGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCGTGACGAACACTT > SRR4302544.3383328/1‑94 (MQ=60)
GGAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCA > SRR4302544.4277947/1‑94 (MQ=60)
GAAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCAT > SRR4302544.3205460/1‑94 (MQ=60)
AAAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATA > SRR4302544.2449459/1‑94 (MQ=60)
AAGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATAC > SRR4302544.1551110/1‑94 (MQ=60)
AGGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACA < SRR4302544.4029446/94‑1 (MQ=60)
GGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAG > SRR4302544.3606909/1‑94 (MQ=60)
GGACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAG < SRR4302544.2371359/94‑1 (MQ=60)
GACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGC < SRR4302544.1218028/94‑1 (MQ=60)
ACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCC > SRR4302544.3516537/1‑94 (MQ=60)
ACGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCC < SRR4302544.1784553/94‑1 (MQ=60)
CGGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGCTTCAGCAACCAGGCAATACCCAGGAACGGCTTTACGAACACCTTGTCATACAGCCT > SRR4302544.3393305/1‑94 (MQ=60)
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ACGACCGCACCGATGCTCATGGATGCCACATACCAGCGCAGATAGCCGTTCTCACTTAACAGCAGACCTTTACCTGCAAAGCGGGAAAGGACAGCCGGGATGTTCATCATTGAGTTCAGCGGATCGCGTTTCAGCAACCAGGCAATACCCAGGAACGGCTTGACGAACACTTTGTCATACAGCCA > NC_000913/2391256‑2391440
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
