Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,409,290 |
G→A |
A28V (GCG→GTG) |
yfbS ← |
putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,409,290 | 0 | G | A | 95.5%
| 510.1
/ 3.9
| 155 | A28V (GCG→GTG) | yfbS | putative transport protein |
| Reads supporting (aligned to +/- strand): ref base G (4/3); new base A (82/65); total (87/68) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 158 total aligned reads displayed.
ACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCGCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTAT > NC_000913/2409200‑2409379
|
aCAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCGCa > 2:3991324/1‑93 (MQ=255)
cAACGTTAGGATCAAAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACAt < 1:1709075/93‑1 (MQ=255)
aaCGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCTCATc > 1:333269/1‑93 (MQ=255)
aaCGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATc < 1:1488804/93‑1 (MQ=255)
aCGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATcc > 2:1942100/1‑93 (MQ=255)
aCGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATcc < 2:2575352/93‑1 (MQ=255)
aCGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATcc < 2:2575351/93‑1 (MQ=255)
aCGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATcc > 2:1942103/1‑93 (MQ=255)
aCGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATcc > 2:4503853/1‑93 (MQ=255)
aTCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCAc > 2:4026366/1‑93 (MQ=255)
aTCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCAc < 2:1132039/93‑1 (MQ=255)
aTCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCAc > 1:1515829/1‑93 (MQ=255)
aTCAGAAAAGCCGGAAAATACTTCTGCGACTGTCAGCGTACCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCAc < 2:3890147/93‑1 (MQ=255)
tCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCAct > 1:889490/1‑93 (MQ=255)
cAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCActc > 1:2103141/1‑93 (MQ=255)
cAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCActc > 1:2931356/1‑93 (MQ=255)
aGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCActct > 2:4190445/1‑93 (MQ=255)
aGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCActct < 1:2560834/93‑1 (MQ=255)
aGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCActct < 1:1198999/93‑1 (MQ=255)
aGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGAACACATCCATACGCActct > 2:368204/1‑93 (MQ=255)
aGAAAAGCCGGAAAATACTTCTGCGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCActct < 2:3225027/93‑1 (MQ=255)
gAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCCCTCTg < 2:2325637/93‑1 (MQ=255)
gAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGATTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTg > 1:2771518/1‑93 (MQ=255)
aaaaGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGc > 2:1438588/1‑93 (MQ=255)
aaGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGccc < 2:3666528/93‑1 (MQ=255)
aaGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGccc > 1:3473506/1‑93 (MQ=255)
aaGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGccc > 1:2307051/1‑93 (MQ=255)
aaGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGccc < 2:651570/93‑1 (MQ=255)
aGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCg > 1:2276080/1‑93 (MQ=255)
accGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGt < 2:1564788/92‑1 (MQ=255)
ccGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTc < 1:2948760/93‑1 (MQ=255)
cGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCg > 2:2684602/1‑93 (MQ=255)
cGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCg > 1:3592488/1‑93 (MQ=255)
cGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCg < 1:4156466/93‑1 (MQ=255)
cGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCg > 1:2123679/1‑93 (MQ=255)
acgAAAATGCGTCTGTGCCTGTCAGGCGTCCCCGTGATGCAATCGCGACAATAACAAACAAAGCGCCCACATCCATACGCACTCTGCCCGTCg < 1:4156467/91‑1 (MQ=255)
ggAAAATACTTCTGTGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGc < 1:2517872/93‑1 (MQ=255)
ggAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGc < 1:461002/93‑1 (MQ=255)
aaaTACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCaaa < 2:1159503/93‑1 (MQ=255)
aaTACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCGCATCCATACGCACTCTGCCCGTCGCAAAc > 2:4527752/1‑93 (MQ=255)
aTACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACa > 1:356449/1‑93 (MQ=255)
tACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACaa > 2:806296/1‑93 (MQ=255)
tACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACaa > 1:4529539/1‑93 (MQ=255)
cTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGa < 1:1195062/93‑1 (MQ=255)
ttCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGAc < 1:734615/93‑1 (MQ=255)
ttCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGAc < 1:3168133/93‑1 (MQ=255)
ttCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCATCGCAAACAAGAc < 1:539009/93‑1 (MQ=255)
tGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGAt < 2:1891176/93‑1 (MQ=255)
gggACTGGTAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCGCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATg < 2:4102580/93‑1 (MQ=255)
gACTGTCAGCGTTCCGCTTAATGCAAGCGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGc < 1:327080/93‑1 (MQ=255)
gACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGc > 1:2423096/1‑93 (MQ=255)
aCTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCGCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCa < 2:2989558/93‑1 (MQ=255)
aCTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCa > 2:2480772/1‑93 (MQ=255)
aCTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCa > 2:2145437/1‑93 (MQ=255)
cTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCaa > 2:425771/1‑93 (MQ=255)
gTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACg < 1:281169/93‑1 (MQ=255)
gTCAGCGTTCCGCTTAATGCAAACGCGAAAATAACAAACAAAGAGAACAAATCCAAACGCACTCTGCCCGTCGCAAACAAGACCATGGCAACg > 2:2041160/1‑93 (MQ=255)
cAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGc > 2:1520622/1‑93 (MQ=255)
ttCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTa > 2:577426/1‑93 (MQ=255)
tCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATCCGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTaa < 1:565422/93‑1 (MQ=255)
ccGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAAt < 1:4749602/93‑1 (MQ=255)
gCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGa > 1:1938695/1‑93 (MQ=255)
gCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGa > 1:2394585/1‑93 (MQ=255)
gCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGa > 1:3893530/1‑93 (MQ=255)
gCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGa > 1:3069141/1‑93 (MQ=255)
cTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGaa > 1:4310135/1‑93 (MQ=255)
cTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGaa > 2:3903224/1‑93 (MQ=255)
ttAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGaaa < 2:1275528/93‑1 (MQ=255)
ttAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGaaa < 2:4096688/93‑1 (MQ=255)
ttAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGaaa < 2:1643601/93‑1 (MQ=255)
ttAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGaaa < 2:534813/93‑1 (MQ=255)
aTGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGaa > 1:1767208/1‑93 (MQ=255)
aTGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGaa < 2:2898826/93‑1 (MQ=255)
tGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAAc < 2:2039589/93‑1 (MQ=255)
gCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGTCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAAcc > 2:1044206/1‑93 (MQ=255)
gCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAAcc < 1:499916/93‑1 (MQ=255)
gCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAAcc < 2:119262/93‑1 (MQ=255)
cAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAAccc < 1:4560975/93‑1 (MQ=255)
aaaCGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCa > 1:1711304/1‑93 (MQ=255)
aaCGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCaa > 1:3362172/1‑93 (MQ=255)
aCGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCATACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCaaa > 2:2870731/1‑93 (MQ=255)
gcgACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATc < 2:612444/93‑1 (MQ=255)
gcgACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATc < 2:612445/93‑1 (MQ=255)
cgACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCa > 2:2182796/1‑93 (MQ=255)
gACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCaa > 1:250233/1‑93 (MQ=255)
gACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCaa > 2:4033905/1‑93 (MQ=255)
aCAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAAt > 2:1064713/1‑93 (MQ=255)
cAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAAtt > 2:4685151/1‑93 (MQ=255)
aaTAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTc < 2:4230142/93‑1 (MQ=255)
aacaaacaAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCAcc < 1:3476972/93‑1 (MQ=255)
acaaaGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTca > 2:748928/1‑93 (MQ=255)
acaaaGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTca > 1:2420974/1‑93 (MQ=255)
acaaaGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTca < 1:915155/93‑1 (MQ=255)
caaaGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTcac > 1:192245/1‑93 (MQ=255)
aaaGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTcaca > 2:2331652/1‑93 (MQ=255)
aGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAAc > 2:3203537/1‑93 (MQ=255)
aGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAAc < 1:4339317/93‑1 (MQ=255)
gACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTa > 2:1921179/1‑93 (MQ=255)
gACCACATCCATACGCACTCTGCACGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTa < 2:2619828/93‑1 (MQ=255)
aCCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTAt > 2:2182346/1‑93 (MQ=255)
|
ACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCGCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTAT > NC_000913/2409200‑2409379
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCGCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTT > NC_000913/2409197‑2409383
|
AGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCA > SRR4302544.4074907/1‑94 (MQ=60)
CAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCTCATC > SRR4302544.336733/1‑94 (MQ=60)
CAACGTTAGGATCAAAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATC < SRR4302544.1725909/94‑1 (MQ=60)
AACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCC < SRR4302544.1503522/94‑1 (MQ=60)
ACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCA < SRR4302544.3048988/94‑1 (MQ=60)
TTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCGCATCCATAC > SRR4302544.4690152/1‑94 (MQ=60)
TTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATAC < SRR4302544.4072146/94‑1 (MQ=60)
TAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACG > SRR4302544.332866/1‑94 (MQ=60)
GATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCAC > SRR4302544.1530862/1‑94 (MQ=60)
GATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCAC < SRR4302544.274160/94‑1 (MQ=60)
ATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACT > SRR4302544.70461/1‑94 (MQ=60)
ATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACT > SRR4302544.898305/1‑94 (MQ=60)
TCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTC > SRR4302544.2959525/1‑94 (MQ=60)
TCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTC > SRR4302544.2123379/1‑94 (MQ=60)
CAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCT > SRR4302544.352434/1‑94 (MQ=60)
AGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTG < SRR4302544.2585430/94‑1 (MQ=60)
AGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTG < SRR4302544.1210880/94‑1 (MQ=60)
AGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGATTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTG > SRR4302544.2798184/1‑94 (MQ=60)
AAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCC > SRR4302544.2923585/1‑94 (MQ=60)
AAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCC > SRR4302544.3506629/1‑94 (MQ=60)
AAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCC > SRR4302544.2328853/1‑94 (MQ=60)
AAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCG > SRR4302544.2297512/1‑94 (MQ=60)
AGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGT > SRR4302544.3709910/1‑94 (MQ=60)
AGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGT > SRR4302544.2554450/1‑94 (MQ=60)
GCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTC > SRR4302544.2187705/1‑94 (MQ=60)
CCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCG > SRR4302544.2144050/1‑94 (MQ=60)
CCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCG > SRR4302544.3626990/1‑94 (MQ=60)
CCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCG < SRR4302544.2977083/94‑1 (MQ=60)
acgaaaatgcgtctgtgcctgtcaggcgtccccgtgATGCAATCGCGACAATAACAAACAAAGCGCCCACATCCATACGCACTCTGCCCGTCGC < SRR4302544.4197635/58‑1 (MQ=60)
CGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGC < SRR4302544.4197634/94‑1 (MQ=60)
GGAAAATACTTCTGTGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCA < SRR4302544.2542052/94‑1 (MQ=60)
GGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCA < SRR4302544.465534/94‑1 (MQ=60)
AATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACA > SRR4302544.360104/1‑94 (MQ=60)
ATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAA > SRR4302544.4574857/1‑94 (MQ=60)
ATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAA < SRR4302544.2346164/94‑1 (MQ=60)
CTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGAC < SRR4302544.1206915/94‑1 (MQ=60)
TTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACG < SRR4302544.3198283/94‑1 (MQ=60)
TTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACG < SRR4302544.741796/94‑1 (MQ=60)
TTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCATCGCAAACAAGACG < SRR4302544.544332/94‑1 (MQ=60)
TGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATG < SRR4302544.844077/94‑1 (MQ=60)
GGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGC > SRR4302544.2446168/1‑94 (MQ=60)
GGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGC > SRR4302544.2446167/1‑94 (MQ=60)
GACTGTCAGCGTTCCGCTTAATGCAAGCGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCA < SRR4302544.330484/94‑1 (MQ=60)
CTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAAC > SRR4302544.1774228/1‑94 (MQ=60)
TGTCATCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAGGACGATGGCAACG < SRR4302544.1619316/94‑1 (MQ=60)
GTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGG < SRR4302544.284102/94‑1 (MQ=60)
AGCGTTCCGCTTAATGCAAACGCGACAATAACAAAAAAACCCACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCA < SRR4302544.187327/94‑1 (MQ=60)
TCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATCCGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAAT < SRR4302544.570949/94‑1 (MQ=60)
CCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATG < SRR4302544.4796381/94‑1 (MQ=60)
CGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGA > SRR4302544.3098390/1‑94 (MQ=60)
CGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGA > SRR4302544.1957465/1‑94 (MQ=60)
CGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGA > SRR4302544.2031253/1‑94 (MQ=60)
CGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGA > SRR4302544.3932205/1‑94 (MQ=60)
CGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGA > SRR4302544.2417284/1‑94 (MQ=60)
GCTTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAA > SRR4302544.4354066/1‑94 (MQ=60)
TTAATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAG < SRR4302544.4411763/94‑1 (MQ=60)
AATGCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAA > SRR4302544.1784506/1‑94 (MQ=60)
GCAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCC < SRR4302544.504828/94‑1 (MQ=60)
CAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCA < SRR4302544.4606458/94‑1 (MQ=60)
CAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCA > SRR4302544.1728151/1‑94 (MQ=60)
CAAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCA > SRR4302544.528712/1‑94 (MQ=60)
AAACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAA > SRR4302544.3394258/1‑94 (MQ=60)
ACGCGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAAT > SRR4302544.325698/1‑94 (MQ=60)
CGACAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAA > SRR4302544.252865/1‑94 (MQ=60)
CAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTC < SRR4302544.4587844/94‑1 (MQ=60)
CAATAACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTC > SRR4302544.999000/1‑94 (MQ=60)
AACAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCG < SRR4302544.3510125/94‑1 (MQ=60)
CAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTT > SRR4302544.4246291/1‑94 (MQ=60)
CAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTT < SRR4302544.2438657/94‑1 (MQ=60)
CAAACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTT < SRR4302544.1396306/94‑1 (MQ=60)
AACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCA > SRR4302544.2444028/1‑94 (MQ=60)
ACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCAC > SRR4302544.194173/1‑94 (MQ=60)
ACAAAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCAC < SRR4302544.924195/94‑1 (MQ=60)
AAGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAAC > SRR4302544.348721/1‑94 (MQ=60)
AGCGACCACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACT < SRR4302544.4383470/94‑1 (MQ=60)
CACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCT > SRR4302544.2364923/1‑94 (MQ=60)
CACATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCT > SRR4302544.915328/1‑94 (MQ=60)
CCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTT < SRR4302544.897087/94‑1 (MQ=60)
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AGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCGCATCCATACGCACTCTGCCCGTCGCAAACAAGACGATGGCAACGGCCAGTAATGAAAGAACCCAAATCAATTCACCGTTCACAACTTATCCTT > NC_000913/2409197‑2409383
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
