Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,409,738 |
T→C |
A130A (GCA→GCG) |
yfbT ← |
putative phosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,409,738 | 0 | T | C | 96.8%
| 290.8
/ ‑1.6
| 95 | A130A (GCA→GCG) | yfbT | putative phosphatase |
| Reads supporting (aligned to +/- strand): ref base T (1/2); new base C (47/45); total (48/47) |
| Fisher's exact test for biased strand distribution p-value = 6.17e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.25e-01 |
Only 100 of 101 total aligned reads displayed.
CGCAAGCCCCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGTGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCTTTATTC > NC_000913/2409648‑2409825
|
cgcAAGCCCCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGgcgc > 2:3366941/1‑93 (MQ=255)
gcAAGCCCCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGcgcg > 1:1015184/1‑93 (MQ=255)
gcAAGCCCCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGcgcg > 1:90779/1‑93 (MQ=255)
aaGCCCCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCggg < 2:1085914/93‑1 (MQ=255)
aGCCCCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGa > 2:1084718/1‑93 (MQ=255)
gCCCCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGaa < 2:2045396/93‑1 (MQ=255)
gCCCCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGaa < 2:1286617/93‑1 (MQ=255)
ccccAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAg > 1:1968412/1‑93 (MQ=255)
ccAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGcc < 2:2701290/93‑1 (MQ=255)
ccAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGcc < 1:1835540/93‑1 (MQ=255)
cagcagCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAATccc < 2:3190768/93‑1 (MQ=255)
cagcagCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGccc < 1:2519974/93‑1 (MQ=255)
cagcagCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGccc < 1:517704/93‑1 (MQ=255)
cagcagCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGccc < 1:2058131/93‑1 (MQ=255)
gcTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTa < 2:1009880/93‑1 (MQ=255)
gcTGCGCGCCTAACAGATACGCATCAGGTTCTGGGTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCtt > 1:3484326/1‑92 (MQ=255)
gcgcgcCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTAttt < 1:3507257/93‑1 (MQ=255)
gcgcCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTa < 2:1249653/93‑1 (MQ=255)
cgcCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTAt < 1:1042331/93‑1 (MQ=255)
cgcCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTAt < 1:2991314/93‑1 (MQ=255)
ccTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATgg > 1:2756086/1‑93 (MQ=255)
cTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGgc < 1:1303240/93‑1 (MQ=255)
aaCAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGgcgc > 1:4410908/1‑93 (MQ=255)
aCAGATACGCATCAGGTTCTGGTTTTCTGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGgcgcg > 2:4365936/1‑93 (MQ=255)
aCAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGTGCGGGAAGCCCAGCTATTTTATGgcgcg < 1:745400/93‑1 (MQ=255)
aCAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGgcgcg > 2:3055631/1‑93 (MQ=255)
aCAGATACGCATCAGGTTCTGGTTTTCCGCACTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGgcgcg > 2:3157459/1‑93 (MQ=255)
cAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGgcgcgc < 2:4139338/93‑1 (MQ=255)
cAGATACGCATCAGGTTCTGGTTTTCCCCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCTCAGATATTTTATGgcgcgg > 2:165540/1‑92 (MQ=255)
aGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGcgcgct > 2:655630/1‑93 (MQ=255)
aGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGcgcgct > 1:2755608/1‑93 (MQ=255)
gATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGcgcgctc < 2:670590/93‑1 (MQ=255)
tACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGcgcgctcgc < 2:693398/93‑1 (MQ=255)
tACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGcgcgctcgc > 1:3576432/1‑93 (MQ=255)
aCGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGcgcgctcgcg > 1:1723457/1‑93 (MQ=255)
cGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGcgcgctcgcgc < 1:4013287/93‑1 (MQ=255)
aTCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTAc < 2:705112/93‑1 (MQ=255)
tCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTAcc > 2:1066568/1‑93 (MQ=255)
tCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTAcc > 2:788072/1‑93 (MQ=255)
aGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCgg > 2:2264283/1‑93 (MQ=255)
ggTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGTGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGc > 1:2331152/1‑93 (MQ=255)
ggTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGc > 2:4486074/1‑93 (MQ=255)
ttCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCAt < 1:1043145/93‑1 (MQ=255)
ttCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCAt > 1:3179473/1‑93 (MQ=255)
cTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATgg < 2:3337303/93‑1 (MQ=255)
cTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATgg < 1:3027873/93‑1 (MQ=255)
tGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGa < 2:227302/93‑1 (MQ=255)
ggTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAg < 1:3899693/93‑1 (MQ=255)
gTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGc > 1:1158366/1‑93 (MQ=255)
ttttCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGcc < 1:92399/93‑1 (MQ=255)
ttttCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGcc > 1:3898173/1‑93 (MQ=255)
ttttCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGcc < 2:159473/93‑1 (MQ=255)
tCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGa < 1:2537973/93‑1 (MQ=255)
ccGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGaa < 1:3053042/93‑1 (MQ=255)
cgcgCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAg > 2:2471969/1‑93 (MQ=255)
gcgcTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGt > 1:1531998/1‑93 (MQ=255)
ccgcTTCGCTCGCTCAGCGGTTACAAGCACCTCTGGTGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGt < 1:3897955/92‑1 (MQ=255)
cgcTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTc < 2:2070412/93‑1 (MQ=255)
cgcTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTc < 1:3578629/93‑1 (MQ=255)
gcTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTca > 2:3204376/1‑93 (MQ=255)
gcTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTca > 1:3984314/1‑93 (MQ=255)
gcTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTca > 1:3937758/1‑93 (MQ=255)
cTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTcac > 1:2821004/1‑93 (MQ=255)
ttCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTcaca > 2:2271607/1‑93 (MQ=255)
tCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACaa < 1:4677524/93‑1 (MQ=255)
tCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACaa < 1:4133800/93‑1 (MQ=255)
tCACTCGCGCAGCGGTTACAAACACCTTTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACaa < 1:1126334/93‑1 (MQ=255)
cACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAAt < 1:3839777/93‑1 (MQ=255)
aCTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATg > 2:655866/1‑93 (MQ=255)
cTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATgg > 1:2596130/1‑93 (MQ=255)
cTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATgg > 2:1780745/1‑93 (MQ=255)
tCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGc > 1:3710882/1‑93 (MQ=255)
cGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGcc < 2:2194529/93‑1 (MQ=255)
gcgcAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGccc < 2:4233702/90‑1 (MQ=255)
cTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCa < 1:3592139/93‑1 (MQ=255)
cTCAGCGGTTACAAACACCTCTGGCGCGGG‑AGCCCAGCTATTTTATTGCGGGCTCGCGCTACCGGCATGGAGCCAGAAGGCACAATGGCCCAc > 2:234192/1‑93 (MQ=255)
tCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCAc > 1:3725069/1‑93 (MQ=255)
tCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCAc < 1:1098645/93‑1 (MQ=255)
tCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAACTCACAATGGCTCAc > 2:1785210/1‑93 (MQ=255)
aGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGTCATGGAGCCAGAAGTCACAATGGCCCACgg > 1:774958/1‑93 (MQ=255)
aGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACgg > 1:133657/1‑93 (MQ=255)
gCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGa > 2:2479414/1‑93 (MQ=255)
cGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGaa > 1:4312142/1‑93 (MQ=255)
ggTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAAt < 1:910843/93‑1 (MQ=255)
ggTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAAt > 1:574911/1‑93 (MQ=255)
ggTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAAt < 1:3532237/93‑1 (MQ=255)
gTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATa > 2:4096355/1‑93 (MQ=255)
ttACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATAc > 1:220842/1‑93 (MQ=255)
tACAAACACCCCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATAcc < 1:3943083/93‑1 (MQ=255)
tcAAACTCCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCTCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCt < 2:1632282/92‑1 (MQ=255)
aCAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCt > 1:2521516/1‑93 (MQ=255)
aaCACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCt > 2:2496861/1‑93 (MQ=255)
aaCACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCt > 2:4520779/1‑93 (MQ=255)
acacCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCtt > 2:2242441/1‑93 (MQ=255)
acacCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCtt > 2:3476278/1‑93 (MQ=255)
acacCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCtt < 1:2203199/93‑1 (MQ=255)
acacCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCtt < 1:1531191/93‑1 (MQ=255)
acCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCTTTa > 1:2639204/1‑93 (MQ=255)
ccTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCTTTAt < 2:2454426/93‑1 (MQ=255)
tctGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCTTTATTc > 1:1225031/1‑93 (MQ=255)
|
CGCAAGCCCCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGTGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCTTTATTC > NC_000913/2409648‑2409825
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCAAGCCCCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGTGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCTTTATTCAAATG > NC_000913/2409648‑2409830
|
CGCAAGCCCCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCG > SRR4302544.1025309/1‑94 (MQ=60)
CGCAAGCCCCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCG > SRR4302544.91632/1‑94 (MQ=60)
GCCCCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAG > SRR4302544.1987530/1‑94 (MQ=60)
CCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCC < SRR4302544.1853367/94‑1 (MQ=60)
CAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCA < SRR4302544.2544184/94‑1 (MQ=60)
CAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCA < SRR4302544.2077930/94‑1 (MQ=60)
CAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCA < SRR4302544.522819/94‑1 (MQ=60)
AGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGGTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTT > SRR4302544.3517533/1‑94 (MQ=60)
GCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTT < SRR4302544.3540711/94‑1 (MQ=60)
CGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATG < SRR4302544.3019998/94‑1 (MQ=60)
CGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATG < SRR4302544.1052669/94‑1 (MQ=60)
GCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGG > SRR4302544.2782615/1‑94 (MQ=60)
CTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCG < SRR4302544.1316051/94‑1 (MQ=60)
TAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGC > SRR4302544.4455446/1‑94 (MQ=60)
ACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGTGCGGGAAGCCCAGCTATTTTATGGCGCGC < SRR4302544.752693/94‑1 (MQ=60)
CAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCT > SRR4302544.2782131/1‑94 (MQ=60)
ATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGC > SRR4302544.3610737/1‑94 (MQ=60)
TACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCG > SRR4302544.1740376/1‑94 (MQ=60)
CGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCT < SRR4302544.4053205/94‑1 (MQ=60)
AGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGTGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGC > SRR4302544.2353256/1‑94 (MQ=60)
GTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCAT > SRR4302544.3209734/1‑94 (MQ=60)
TTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATG < SRR4302544.1053491/94‑1 (MQ=60)
CTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGA < SRR4302544.3056883/94‑1 (MQ=60)
GGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGC > SRR4302544.1169897/1‑94 (MQ=60)
GGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGC < SRR4302544.3938430/94‑1 (MQ=60)
GTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCC > SRR4302544.3936894/1‑94 (MQ=60)
TTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCA < SRR4302544.93260/94‑1 (MQ=60)
TCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAA < SRR4302544.2562348/94‑1 (MQ=60)
CCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAG < SRR4302544.3082204/94‑1 (MQ=60)
CGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGT > SRR4302544.1547207/1‑94 (MQ=60)
CCGCTTCGCTCGCTCAGCGGTTACAAGCACCTCTGGTGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTC < SRR4302544.3936673/94‑1 (MQ=60)
CGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCA > SRR4302544.3976869/1‑94 (MQ=60)
CGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCA > SRR4302544.4023972/1‑94 (MQ=60)
CGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCA < SRR4302544.3612957/94‑1 (MQ=60)
GCTTCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCAC > SRR4302544.2848253/1‑94 (MQ=60)
TCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAAT < SRR4302544.4723766/94‑1 (MQ=60)
TCACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAAT < SRR4302544.4174760/94‑1 (MQ=60)
TCACTCGCGCAGCGGTTACAAACACCTTTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAAT < SRR4302544.1137559/94‑1 (MQ=60)
CACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATG < SRR4302544.3877868/94‑1 (MQ=60)
ACTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGG > SRR4302544.2621088/1‑94 (MQ=60)
CTCGCTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGC > SRR4302544.3747793/1‑94 (MQ=60)
CTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCAC < SRR4302544.3626637/94‑1 (MQ=60)
CTCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCAC > SRR4302544.3762116/1‑94 (MQ=60)
TCAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACG < SRR4302544.1109581/94‑1 (MQ=60)
CAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGTCATGGAGCCAGAAGTCACAATGGCCCACGG > SRR4302544.782484/1‑94 (MQ=60)
CAGCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGG > SRR4302544.134901/1‑94 (MQ=60)
GCGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAA > SRR4302544.4356085/1‑94 (MQ=60)
CGGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAAT > SRR4302544.580530/1‑94 (MQ=60)
GGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATA < SRR4302544.3566022/94‑1 (MQ=60)
GGTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATA < SRR4302544.919848/94‑1 (MQ=60)
GTTACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATAC > SRR4302544.223129/1‑94 (MQ=60)
TACAAACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCT > SRR4302544.2545736/1‑94 (MQ=60)
TACAAACACCCCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCT < SRR4302544.3982261/94‑1 (MQ=60)
ACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCTTT < SRR4302544.2223951/94‑1 (MQ=60)
ACACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCTTT < SRR4302544.1546394/94‑1 (MQ=60)
CACCTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCTTTA > SRR4302544.2664503/1‑94 (MQ=60)
CTCTGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCTTTATTC > SRR4302544.1237146/1‑94 (MQ=60)
TGGCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCTTTATTCAAA > SRR4302544.2361521/1‑94 (MQ=60)
GCGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCTTTATTCAAATG < SRR4302544.3098698/94‑1 (MQ=60)
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CGCAAGCCCCAGCAGCTGCGCGCCTAACAGATACGCATCAGGTTCTGGTTTTCCGCGCTTCACTCGCTCAGCGGTTACAAACACCTCTGGTGCGGGAAGCCCAGCTATTTTATGGCGCGCTCGCGCTACCGGCATGGAGCCAGAAGTCACAATGGCCCACGGAATACCTGCTTTATTCAAATG > NC_000913/2409648‑2409830
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
