Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,413,512 |
T→C |
I249T (ATC→ACC) |
pta → |
phosphotransacetylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,413,512 | 0 | T | C | 96.4%
| 327.5
/ 1.6
| 111 | I249T (ATC→ACC) | pta | phosphotransacetylase |
| Reads supporting (aligned to +/- strand): ref base T (2/2); new base C (47/59); total (50/61) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.01e-01 |
Only 100 of 127 total aligned reads displayed.
CTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGA > NC_000913/2413425‑2413601
|
cTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATa < 2:696547/93‑1 (MQ=255)
cTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATa < 2:512708/93‑1 (MQ=255)
cTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATa < 2:512707/93‑1 (MQ=255)
tgtgCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAacac > 1:1883276/1‑93 (MQ=255)
gtgCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATaat > 2:3946551/1‑91 (MQ=255)
tgCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTc < 2:4394643/93‑1 (MQ=255)
gCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTcg < 1:3177441/93‑1 (MQ=255)
gCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTcg < 1:3010269/93‑1 (MQ=255)
cGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTcgcc > 1:2507696/1‑93 (MQ=255)
cGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAAAACTcgcc > 1:4588302/1‑93 (MQ=255)
gTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACCAAGGCGGAACCAATACTcgccc > 2:453051/1‑92 (MQ=255)
tGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTcgccgc > 2:4030534/1‑93 (MQ=255)
tGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACAAAAGCGACACCAATACTcgccgc > 2:3221748/1‑93 (MQ=255)
ggAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCcgcg > 1:3701887/1‑93 (MQ=255)
aGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGtt < 2:1978207/93‑1 (MQ=255)
aGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCGCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGtt < 2:1978206/93‑1 (MQ=255)
gCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTa < 2:1892864/93‑1 (MQ=255)
tttGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGCATGGGAACATCATCAACGAATTCGACACCAATAATCTCCGCGTTaaa > 2:3266896/1‑93 (MQ=255)
tttGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTaaa > 2:3266895/1‑93 (MQ=255)
tttGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTaaa < 2:4633501/93‑1 (MQ=255)
tttGACCTGAGCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTaaa < 1:2174339/93‑1 (MQ=255)
ttGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCCATAATCGCCCCGTTAAAt > 2:2514554/1‑93 (MQ=255)
gACCTGATCGCGACTCGTGCGATCGATATGGCTCCCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAAAACTCGCCGCGGTAAATcc > 2:1706590/1‑93 (MQ=255)
ccTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGCAGGCGACACCAATACTCGCCGCGTTTAATCCGt > 2:4690518/1‑93 (MQ=255)
ccTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGt < 1:56426/93‑1 (MQ=255)
ccTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGt < 2:3963605/93‑1 (MQ=255)
cTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTc > 1:3169392/1‑93 (MQ=255)
tGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTTCCCGCGGTAAATCCgctc > 2:860480/1‑90 (MQ=255)
cgATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCa < 1:1543848/92‑1 (MQ=255)
aTCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGGGACACCAATACTCGCCGCGTTAAATCCGTCACt > 1:296084/1‑93 (MQ=255)
ggcaCTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACG‑AGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCt < 2:661928/90‑1 (MQ=255)
gcgACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACtttt > 2:3766930/1‑92 (MQ=255)
cgACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCt < 2:3879717/93‑1 (MQ=255)
cgACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCt < 2:662062/93‑1 (MQ=255)
aCTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTgc < 1:3781070/93‑1 (MQ=255)
aCTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTgc < 1:3582262/93‑1 (MQ=255)
tCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTgcgc > 1:1365806/1‑93 (MQ=255)
cGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGcgca < 2:1669014/93‑1 (MQ=255)
cGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGcgca < 2:3032816/93‑1 (MQ=255)
gTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCCTCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGcgcac > 1:220447/1‑93 (MQ=255)
gTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTTTTcgcac > 2:1740264/1‑93 (MQ=255)
tGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGcgcacg > 1:3986370/1‑93 (MQ=255)
cgatcgatATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATCCTCGCCGCGTTAAATCCGTCACTTTCTGcgcacgca < 2:3243212/93‑1 (MQ=255)
cgatcgatATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGcgcacgca > 1:378468/1‑93 (MQ=255)
gatcgatATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACgcag > 1:2762641/1‑93 (MQ=255)
gatcgatATGGCTCGCCACCTGAATGCGACCAACATCAACGAAGGCGAAACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACgcag > 2:2285445/1‑93 (MQ=255)
atcgatATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACgcagc > 2:694256/1‑93 (MQ=255)
tcgatATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACgcagca < 2:886859/93‑1 (MQ=255)
tcgatATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACgcagca > 2:4166841/1‑93 (MQ=255)
tccatatGGCTCCCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACgcagca < 2:3755285/90‑1 (MQ=255)
cgatATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCAt < 1:702096/93‑1 (MQ=255)
atatGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTc > 2:3953201/1‑93 (MQ=255)
tatGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTcc < 2:926075/93‑1 (MQ=255)
cTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGcaca > 2:4063809/1‑93 (MQ=255)
tCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACAt < 1:818643/93‑1 (MQ=255)
gCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGc < 1:1326715/93‑1 (MQ=255)
gCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGc > 2:661553/1‑93 (MQ=255)
ccACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCt > 1:2041931/1‑93 (MQ=255)
cACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTg < 2:4235686/93‑1 (MQ=255)
cACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTg > 2:166867/1‑93 (MQ=255)
aCCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTgg > 2:2941929/1‑93 (MQ=255)
aCCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTgg > 1:209986/1‑93 (MQ=255)
tGAATGCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGc > 2:4528152/1‑93 (MQ=255)
tGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGc < 2:2831874/93‑1 (MQ=255)
tGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGc < 1:3474231/93‑1 (MQ=255)
gAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCa > 1:968222/1‑93 (MQ=255)
aaTGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCAc > 2:3426168/1‑93 (MQ=255)
aTGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACt < 2:3315460/93‑1 (MQ=255)
tGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACtt > 1:442188/1‑93 (MQ=255)
gCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTc > 1:3458101/1‑93 (MQ=255)
gCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTc < 2:663612/93‑1 (MQ=255)
gCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTc < 2:2231230/93‑1 (MQ=255)
cGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTcc < 2:3634285/93‑1 (MQ=255)
cGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTcc < 1:648028/93‑1 (MQ=255)
cGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTcc < 2:1384945/93‑1 (MQ=255)
aCCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGt > 2:1198753/1‑93 (MQ=255)
atcatcAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGcc < 1:367576/93‑1 (MQ=255)
tcatcaACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCg > 2:765986/1‑93 (MQ=255)
atcaACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGt > 1:2514262/1‑93 (MQ=255)
tcaACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGtt < 2:502515/93‑1 (MQ=255)
tcaACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACACGCTGGAGCACTTCCGTGCCGGtt > 1:1786623/1‑93 (MQ=255)
caACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTtc > 1:3059462/1‑93 (MQ=255)
aaCGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTtct > 2:877025/1‑93 (MQ=255)
aCGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTtctc > 1:1098819/1‑93 (MQ=255)
aCGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTtctc > 1:3946899/1‑93 (MQ=255)
cGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTctct > 1:1671345/1‑93 (MQ=255)
cGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTctct < 2:2507696/93‑1 (MQ=255)
cGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTctct > 2:1467635/1‑93 (MQ=255)
gAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTctg > 1:745482/1‑93 (MQ=255)
aaGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTctgc > 1:2355826/1‑93 (MQ=255)
aaGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTctgc < 2:1226586/93‑1 (MQ=255)
aGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTctgct > 1:1440725/1‑93 (MQ=255)
ggCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTctgctg > 2:2115127/1‑93 (MQ=255)
ggCGACACCAATACTCGCCGCATTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTctgctg < 2:2104507/93‑1 (MQ=255)
ggCGACAACAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTctgctg > 2:3697758/1‑93 (MQ=255)
cGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGt < 1:3389635/93‑1 (MQ=255)
cGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGt < 1:3979725/93‑1 (MQ=255)
acacCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTTGTGa > 1:565442/1‑93 (MQ=255)
acacCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGa > 1:3203746/1‑93 (MQ=255)
acacCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGa > 1:414963/1‑93 (MQ=255)
|
CTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGA > NC_000913/2413425‑2413601
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACT > NC_000913/2413420‑2413603
|
CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACC < SRR4302544.1701382/94‑1 (MQ=60)
CTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAACAC > SRR4302544.1901479/1‑94 (MQ=60)
GCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGC < SRR4302544.3207675/94‑1 (MQ=60)
GCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGC < SRR4302544.3039124/94‑1 (MQ=60)
CCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCC > SRR4302544.2531741/1‑94 (MQ=60)
CCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAAAACTCGCC > SRR4302544.4633972/1‑94 (MQ=60)
TGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCG > SRR4302544.3738737/1‑94 (MQ=60)
TTTGACCTGAGCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAAT < SRR4302544.2194940/94‑1 (MQ=60)
CCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTC < SRR4302544.56993/94‑1 (MQ=60)
CCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTC > SRR4302544.3199552/1‑94 (MQ=60)
CTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCA < SRR4302544.2024791/94‑1 (MQ=60)
CTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCA < SRR4302544.3710981/94‑1 (MQ=60)
TGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCAC < SRR4302544.617917/94‑1 (MQ=60)
CGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCAC < SRR4302544.1559215/94‑1 (MQ=60)
GATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGGGACACCAATACTCGCCGCGTTAAATCCGTCACT > SRR4302544.299146/1‑94 (MQ=60)
ATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGGGACCATCATCAACGAAGGCGCCACCAATACTCGCCGCGTTAAATCCGTCACTT > SRR4302544.2816808/1‑94 (MQ=60)
ACTCGTGCGATCGATATGGCTCGCCCCCGGAAGGCGACCATCATAAACGAAGGTGCAACCAATAATCGCCGCGCTTAAACCGTCACTTTCTGCC > SRR4302544.1618218/1‑94 (MQ=21)
ACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCG < SRR4302544.3818521/94‑1 (MQ=60)
ACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCG < SRR4302544.3616632/94‑1 (MQ=60)
ACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCG < SRR4302544.1546484/94‑1 (MQ=60)
CTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGC > SRR4302544.1379384/1‑94 (MQ=60)
CGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCCTCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCAC > SRR4302544.222730/1‑94 (MQ=60)
CGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCAC < SRR4302544.4425315/94‑1 (MQ=60)
CGTGCGATCGATATGGCTCCCCACCTGAATGCGACCACCATCAACGAACGGGACCCCAATACTCGCCGCCGTAAATACGTCACTTTCTGCGCAC > SRR4302544.1062568/1‑94 (MQ=53)
GTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACG > SRR4302544.4026054/1‑94 (MQ=60)
GCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCA > SRR4302544.382322/1‑94 (MQ=60)
CGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAG > SRR4302544.2789214/1‑94 (MQ=60)
TCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACCTTCTGCGCCCGCACCAT > SRR4302544.3459143/1‑94 (MQ=60)
CGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATT < SRR4302544.709085/94‑1 (MQ=60)
CGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATT < SRR4302544.2346414/94‑1 (MQ=60)
ATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCC < SRR4302544.3128855/94‑1 (MQ=60)
TGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCA < SRR4302544.2754787/94‑1 (MQ=60)
TCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATG < SRR4302544.3972745/94‑1 (MQ=60)
TCGCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATG < SRR4302544.826640/94‑1 (MQ=60)
GCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCT > SRR4302544.2061631/1‑94 (MQ=60)
GCCACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCT < SRR4302544.1339757/94‑1 (MQ=60)
CACCTGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGG > SRR4302544.212150/1‑94 (MQ=60)
TGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCA > SRR4302544.977717/1‑94 (MQ=60)
TGAATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCA < SRR4302544.3507361/94‑1 (MQ=60)
ATGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTT > SRR4302544.446616/1‑94 (MQ=60)
TGCGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTC > SRR4302544.3491107/1‑94 (MQ=60)
CGACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCG < SRR4302544.654428/94‑1 (MQ=60)
GACCATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGT > SRR4302544.76023/1‑94 (MQ=60)
ATCATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCG < SRR4302544.371334/94‑1 (MQ=60)
CATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGT > SRR4302544.2538404/1‑94 (MQ=60)
ATCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACACGCTGGAGCACTTCCGTGCCGGTT > SRR4302544.1804086/1‑94 (MQ=60)
TCAACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTC > SRR4302544.3088659/1‑94 (MQ=60)
AACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTC > SRR4302544.3986121/1‑94 (MQ=60)
AACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTC > SRR4302544.1109758/1‑94 (MQ=60)
ACGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCT > SRR4302544.1687812/1‑94 (MQ=60)
CGAAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTG > SRR4302544.752775/1‑94 (MQ=60)
GAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGC > SRR4302544.2378143/1‑94 (MQ=60)
AAGGCGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCT > SRR4302544.1455061/1‑94 (MQ=60)
CGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTG < SRR4302544.4019328/94‑1 (MQ=60)
CGACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTG < SRR4302544.3422029/94‑1 (MQ=60)
GACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTTGTGA > SRR4302544.570969/1‑94 (MQ=60)
GACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGA > SRR4302544.3234287/1‑94 (MQ=60)
GACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGA > SRR4302544.419199/1‑94 (MQ=60)
ACACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGAC > SRR4302544.2397715/1‑94 (MQ=60)
CACCAATACTCGCCGCGTTAAATCCGTCCCTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACT < SRR4302544.609575/94‑1 (MQ=60)
CACCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACT < SRR4302544.3460304/94‑1 (MQ=60)
|
CGGCGCTGTGCCGTGGAGCTTTGACCTGATCGCGACTCGTGCGATCGATATGGCTCGCCACCTGAATGCGACCATCATCAACGAAGGCGACATCAATACTCGCCGCGTTAAATCCGTCACTTTCTGCGCACGCAGCATTCCGCACATGCTGGAGCACTTCCGTGCCGGTTCTCTGCTGGTGACT > NC_000913/2413420‑2413603
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
