Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1357	179.3	9500450	96.1%	9129932	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	NC_000913	2,419,010	(C)_6→9	coding (370/648 nt)	yfcG →	putative S‑transferase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2419004	7 (0.040)	139 (0.790) +CCC	80/166	0.7	95.2%	coding (364/648 nt)	yfcG	putative S‑transferase
*	?	NC_000913	2419005 =	7 (0.040)	139 (0.790) +CCC	80/166	0.7	95.2%	coding (365/648 nt)	yfcG	putative S‑transferase

Only 100 of 151 total aligned reads displayed.

GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2418913‑2419004

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCC  >  NC_000913/2419005‑2419096

|||

GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGC                                                                                                <  2:1828749/93‑1

    GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCC                                                                                            >  2:4706087/1‑93

       CGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCC                                                                                         <  1:2261810/93‑1

        GCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCa                                                                                        >  2:4550198/1‑92

         CGCCGCCACATTACAGTCGTTATTCTGGCAGGTAGGCGGACTGGGGCCGCTGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCaa                                                                                       <  1:2622800/93‑3

          GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCaaac                                                                                      >  2:2007963/1‑89

          GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCaac                                                                                      >  1:3405385/1‑90

           CCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCAAAc                                                                                     >  1:459792/1‑92

           CCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCAAAc                                                                                     >  1:459793/1‑92

            CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACC                                                                                   >  1:3918197/1‑93

             GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCCAAATCATCATTTTAATCACGCAG‑CCCACCCCAAACCA                                                                                  >  1:1529248/1‑93

             GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCA                                                                                  <  1:1051730/93‑1

             GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCA                                                                                  >  1:3688171/1‑93

             GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCA                                                                                  <  2:4339165/93‑1

              CCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCAT                                                                                 >  1:3218702/1‑93

               CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATT                                                                                >  2:1374682/1‑93

               CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATT                                                                                >  2:2800283/1‑93

                ACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTC                                                                               >  1:1988769/1‑93

                ACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CACCCCCCAAACCATcc                                                                               >  1:1471142/1‑91

                ACATTACAGTGGCTATTCTGGCAGGCAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCACCCCGCCAAACtctt                                                                                >  2:1670617/1‑89

                 CATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCC                                                                              <  2:3617346/93‑1

                  ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCT                                                                             <  2:591043/93‑1

                   TTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTT                                                                            >  2:4089363/1‑93

                   TTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTT                                                                            >  1:4361531/1‑93

                   TTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTT                                                                            >  1:658711/1‑93

                     ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTAC                                                                          <  1:2828701/93‑1

                     ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTAC                                                                          <  2:2660191/93‑1

                     ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTAC                                                                          >  2:3614008/1‑93

                     ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTAC                                                                          <  2:1637323/93‑1

                      CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTAC                                                                          <  1:324049/93‑1

                       AGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGC                                                                        >  1:113876/1‑93

                        GTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCT                                                                       <  1:706716/93‑1

                         TGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTA                                                                      <  1:2750493/93‑1

                          GGTTATTCGGGCCGGTAGGGGAACGGGGGCCGATGCTTGGGCAAAATCATCATTTTATTCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTAT                                                                     <  2:755318/93‑1

                           GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATT                                                                    <  2:3607823/93‑1

                           GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATT                                                                    <  2:3273396/93‑1

                           GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATT                                                                    <  2:3479240/93‑1

                           GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATT                                                                    <  2:396397/93‑1

                              ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAA                                                                 <  2:4711221/93‑1

                                 CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCCCGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGT                                                              <  2:836735/93‑1

                                 CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGT                                                              <  1:3875130/93‑1

                                 CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGT                                                              <  1:2291454/93‑1

                                  TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTT                                                             >  1:1346724/1‑93

                                   GGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTA                                                            >  1:984012/1‑93

                                    GCAGGTAGGCGGACTGGGGCCGATGCTTGAGAAAAATCATCATTTTAAAAACGCAG‑CCCCCCCCAAACAATTCCTTACGCTATTGAACGTTAT                                                           <  2:4198705/93‑1

                                      AGGTAGGCGGCCTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCC‑AACCATTCCTTACGCTATTGAACGTTATCA                                                         <  2:1238266/93‑1

                                      AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                         <  2:2548568/93‑1

                                         TAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGG                                                       <  2:4529392/93‑1

                                         TAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGT                                                      <  1:4462815/93‑1

                                              GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAA                                                 >  1:1890599/1‑93

                                               GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                <  2:880259/93‑1

                                               GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                <  2:2033760/93‑1

                                                ACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                               >  1:2688503/1‑93

                                                  TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA                                             >  1:1953754/1‑93

                                                  TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA                                             <  1:2139478/93‑1

                                                   GGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAG                                            <  1:3437484/93‑1

                                                    GGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGC                                           <  2:3600829/93‑1

                                                    GGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGC                                           <  2:3764277/93‑1

                                                    GGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGC                                           <  1:3517785/93‑1

                                                     GGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCG                                          >  1:3185586/1‑93

                                                     GGCCGAGGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCG                                          <  2:3140365/93‑1

                                                       gCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTC                                        <  1:1678178/92‑1

                                                       CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTC                                        <  1:116808/93‑1

                                                          ATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTT                                     >  2:1954681/1‑93

                                                          ATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTT                                     <  2:2153918/93‑1

                                                           TGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTc                                    >  2:3025272/1‑92

                                                            GCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC                                   >  2:3027079/1‑93

                                                              TTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTCTACCA                                 >  1:1720209/1‑93

                                                               TGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCAT                                <  1:2107105/93‑1

                                                                GGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATG                               <  2:466082/93‑1

                                                                GGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATG                               >  2:3414256/1‑93

                                                                 GGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAACCCATTCCTTACCCTATTGAACGTTATCAGGTTGAACCCCAGGGCCTTTACAATGT                              >  2:1124695/1‑93

                                                                  GCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTA                             <  2:2162844/93‑1

                                                                    AAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACT                           >  1:1156963/1‑93

                                                                      AATAATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGA                         <  2:1466428/93‑1

                                                                       ATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAg                        >  1:3159367/1‑92

                                                                        aCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAgc                       <  1:1329811/92‑3

                                                                        TCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAgc                       >  1:150222/1‑91

                                                                         CATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCA                      >  2:1210557/1‑93

                                                                          ATCCTTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                     >  2:2475188/1‑93

                                                                          ATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                     >  1:3028109/1‑93

                                                                           TCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG                    <  2:3714371/93‑1

                                                                           TCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG                    >  2:873700/1‑93

                                                                            CATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGC                   <  1:297741/93‑1

                                                                             ATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG                  <  2:1207095/93‑1

                                                                             ATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG                  <  2:3811462/93‑1

                                                                             ATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGCCTTTACCATGTACTGAGCAAGCG                  >  2:3813051/1‑93

                                                                                 TAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTG              <  2:4129442/93‑1

                                                                                   ATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA            <  2:1828559/93‑1

                                                                                   ATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA            >  1:1037141/1‑93

                                                                                     CACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAATTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAA           >  2:4483074/1‑93

                                                                                         gcagCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT       >  1:2762988/5‑93

                                                                                         gcagCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT       <  2:2010896/89‑1

                                                                                         gcagCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT       >  1:1097678/5‑93

                                                                                            CCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGC    <  2:3852686/93‑1

                                                                                              CCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC  <  1:287147/93‑1

                                                                                              CCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC  <  1:3072078/93‑1

                                                                                              CCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC  >  1:3341707/1‑93

                                                                                              CCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC  <  1:3465719/93‑1

                                                                                              CCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC  <  1:3650541/93‑1

|||

GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2418913‑2419004

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCC  >  NC_000913/2419005‑2419096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTG  >  NC_000913/2418917‑2419102

GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CC‑‑CCCC                                                                                                 >  SRR4302544.153040/1‑94 (MQ=60)

   CGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CC‑‑CCCCcca                                                                                              <  SRR4302544.2283088/94‑4 (MQ=60)

     CGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CC‑‑CCCCccaac                                                                                            >  SRR4302544.3437942/1‑89 (MQ=60)

     CGCCGCCACATTACAGTCGTTATTCTGGCAGGTAGGCGGACTGGGGCCGCTGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CC‑‑CCCCccaaa                                                                                            <  SRR4302544.2647950/94‑6 (MQ=60)

      GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAAC                                                                                          >  SRR4302544.464313/1‑94 (MQ=60)

      GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAAC                                                                                          >  SRR4302544.464312/1‑94 (MQ=60)

       CCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACC                                                                                         >  SRR4302544.3957110/1‑94 (MQ=60)

        CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCCAAATCATCATTTTAATCACGCAG‑‑‑CCCACCCC‑‑‑AAACCA                                                                                        >  SRR4302544.1544434/1‑94 (MQ=60)

        CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCC‑‑CCCC‑‑‑AAACC                                                                                         >  SRR4302544.3075976/1‑94 (MQ=60)

        CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCA                                                                                        >  SRR4302544.3724933/1‑94 (MQ=60)

         GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCAT                                                                                       <  SRR4302544.1062150/94‑1 (MQ=60)

         GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCAT                                                                                       >  SRR4302544.3249408/1‑94 (MQ=60)

         GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGC‑‑CC‑‑CCCC‑‑‑AAACCATT                                                                                      >  SRR4302544.4347910/1‑94 (MQ=60)

          CCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATT                                                                                      <  SRR4302544.3791675/94‑1 (MQ=60)

           CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTC                                                                                     >  SRR4302544.2008076/1‑94 (MQ=60)

           CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCA‑CC‑‑CCCC‑‑‑AAACCATCC                                                                                     >  SRR4302544.1485714/1‑94 (MQ=60)

              ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTT                                                                                  >  SRR4302544.4405787/1‑94 (MQ=60)

              ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTT                                                                                  >  SRR4302544.665225/1‑94 (MQ=60)

              ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTT                                                                                  <  SRR4302544.1086362/94‑1 (MQ=60)

                TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTAC                                                                                <  SRR4302544.662162/94‑1 (MQ=60)

                 ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACG                                                                               <  SRR4302544.2856029/94‑1 (MQ=60)

                  CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCC‑‑CCCC‑‑‑AAACCATTCCTTACG                                                                               <  SRR4302544.327415/94‑1 (MQ=60)

                  CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGC                                                                              >  SRR4302544.114914/1‑94 (MQ=60)

                    GTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTA                                                                            <  SRR4302544.713737/94‑1 (MQ=60)

                     TGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTAT                                                                           <  SRR4302544.3483765/94‑1 (MQ=60)

                     TGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTAT                                                                           <  SRR4302544.2776983/94‑1 (MQ=60)

                       GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTG                                                                         <  SRR4302544.2356656/94‑1 (MQ=60)

                             CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTT                                                                   <  SRR4302544.3913611/94‑1 (MQ=60)

                             CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTT                                                                   >  SRR4302544.1360061/1‑94 (MQ=60)

                             CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTT                                                                   <  SRR4302544.2313054/94‑1 (MQ=60)

                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTA                                                                  <  SRR4302544.3261559/94‑1 (MQ=60)

                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTA                                                                  >  SRR4302544.993656/1‑94 (MQ=60)

                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CC‑‑CCCCCCAAAACCATTCCTTACGCTATTGAACGTT                                                                   >  SRR4302544.2077415/1‑94 (MQ=60)

                               GGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTAT                                                                 <  SRR4302544.1167780/94‑1 (MQ=60)

                                 CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCA                                                               >  SRR4302544.2170053/1‑94 (MQ=60)

                                   GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGG                                                             <  SRR4302544.1913881/94‑1 (MQ=60)

                                     TAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTT                                                           <  SRR4302544.4507730/94‑1 (MQ=60)

                                         CGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAA                                                       >  SRR4302544.1908863/1‑94 (MQ=60)

                                          GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                      <  SRR4302544.1380046/94‑1 (MQ=60)

                                           GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                                     >  SRR4302544.2714285/1‑94 (MQ=60)

                                           GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                                     >  SRR4302544.2854964/1‑94 (MQ=60)

                                           GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                                     <  SRR4302544.2902282/94‑1 (MQ=60)

                                             CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA                                                   >  SRR4302544.1972705/1‑94 (MQ=60)

                                              TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAG                                                  <  SRR4302544.2159905/94‑1 (MQ=60)

                                               GGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGC                                                 <  SRR4302544.3470352/94‑1 (MQ=60)

                                                GGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCG                                                <  SRR4302544.3551377/94‑1 (MQ=60)

                                                GGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCG                                                >  SRR4302544.3215915/1‑94 (MQ=60)

                                                   GCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                             <  SRR4302544.1694704/94‑1 (MQ=60)

                                                   CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                             >  SRR4302544.4532949/1‑94 (MQ=60)

                                                   CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                             <  SRR4302544.117870/94‑1 (MQ=60)

                                                   CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                             <  SRR4302544.117871/94‑1 (MQ=60)

                                                      ATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA                                          >  SRR4302544.4382207/1‑94 (MQ=60)

                                                      ATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA                                          >  SRR4302544.2734595/1‑94 (MQ=60)

                                                         CTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTCTACCA                                       >  SRR4302544.1737109/1‑94 (MQ=60)

                                                           TGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATG                                     <  SRR4302544.2127379/94‑1 (MQ=60)

                                                               CAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACT                                 >  SRR4302544.1168483/1‑94 (MQ=60)

                                                                  AATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG                              >  SRR4302544.3189417/1‑94 (MQ=60)

                                                                   ATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGC                             >  SRR4302544.151665/1‑94 (MQ=60)

                                                                    ACATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCA                            <  SRR4302544.1342894/94‑1 (MQ=60)

                                                                     CATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                           >  SRR4302544.3057120/1‑94 (MQ=60)

                                                                     CATCATTTTAATCACGCAGC‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG                          <  SRR4302544.1188014/94‑1 (MQ=60)

                                                                        CATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG                        <  SRR4302544.300818/94‑1 (MQ=60)

                                                                           TTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT                     <  SRR4302544.3377589/94‑1 (MQ=60)

                                                                              AATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA                  >  SRR4302544.1047452/1‑94 (MQ=60)

                                                                                   CGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT             >  SRR4302544.1108597/1‑94 (MQ=60)

                                                                                   CGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT             >  SRR4302544.2789562/1‑94 (MQ=60)

                                                                                   CGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAAAT             >  SRR4302544.2554184/1‑94 (MQ=60)

                                                                                       C‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT       <  SRR4302544.3101354/94‑1 (MQ=60)

                                                                                       C‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT       <  SRR4302544.290130/94‑1 (MQ=60)

                                                                                       C‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT       <  SRR4302544.3686967/94‑1 (MQ=60)

                                                                                       C‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT       >  SRR4302544.3273575/1‑94 (MQ=60)

                                                                                       C‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT       <  SRR4302544.1730963/94‑1 (MQ=60)

                                                                                       C‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT       >  SRR4302544.2077870/1‑94 (MQ=60)

                                                                                       C‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT       <  SRR4302544.3498776/94‑1 (MQ=60)

                                                                                         ccCC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC        >  SRR4302544.3373569/3‑94 (MQ=60)

                                                                                           CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGATCGTTATCAGGTTGAACCTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG      <  SRR4302544.4247644/94‑1 (MQ=60)

                                                                                            C‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGG     >  SRR4302544.2780977/1‑94 (MQ=60)

                                                                                               CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACGCGCCCTGGC    >  SRR4302544.2929067/1‑94 (MQ=60)

                                                                                                CCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT   <  SRR4302544.4551404/94‑1 (MQ=60)

                                                                                                CCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT   <  SRR4302544.1260037/94‑1 (MQ=60)

                                                                                                 CC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG  >  SRR4302544.3323727/1‑94 (MQ=60)

                                                                                                 CC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG  >  SRR4302544.3820878/1‑94 (MQ=60)

                                                                                                 CC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG  >  SRR4302544.740404/1‑94 (MQ=60)

GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTG  >  NC_000913/2418917‑2419102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`