Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1357	179.3	9500450	96.1%	9129932	93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTG  >  NC_000913/2418917‑2419102

GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CC‑‑CCCC                                                                                                 >  SRR4302544.153040/1‑94 (MQ=60)

   CGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CC‑‑CCCCcca                                                                                              <  SRR4302544.2283088/94‑4 (MQ=60)

     CGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CC‑‑CCCCccaac                                                                                            >  SRR4302544.3437942/1‑89 (MQ=60)

     CGCCGCCACATTACAGTCGTTATTCTGGCAGGTAGGCGGACTGGGGCCGCTGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CC‑‑CCCCccaaa                                                                                            <  SRR4302544.2647950/94‑6 (MQ=60)

      GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAAC                                                                                          >  SRR4302544.464313/1‑94 (MQ=60)

      GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAAC                                                                                          >  SRR4302544.464312/1‑94 (MQ=60)

       CCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACC                                                                                         >  SRR4302544.3957110/1‑94 (MQ=60)

        CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCCAAATCATCATTTTAATCACGCAG‑‑‑CCCACCCC‑‑‑AAACCA                                                                                        >  SRR4302544.1544434/1‑94 (MQ=60)

        CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCC‑‑CCCC‑‑‑AAACC                                                                                         >  SRR4302544.3075976/1‑94 (MQ=60)

        CGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCA                                                                                        >  SRR4302544.3724933/1‑94 (MQ=60)

         GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCAT                                                                                       <  SRR4302544.1062150/94‑1 (MQ=60)

         GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCAT                                                                                       >  SRR4302544.3249408/1‑94 (MQ=60)

         GCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGC‑‑CC‑‑CCCC‑‑‑AAACCATT                                                                                      >  SRR4302544.4347910/1‑94 (MQ=60)

          CCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATT                                                                                      <  SRR4302544.3791675/94‑1 (MQ=60)

           CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTC                                                                                     >  SRR4302544.2008076/1‑94 (MQ=60)

           CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCA‑CC‑‑CCCC‑‑‑AAACCATCC                                                                                     >  SRR4302544.1485714/1‑94 (MQ=60)

              ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTT                                                                                  >  SRR4302544.4405787/1‑94 (MQ=60)

              ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTT                                                                                  >  SRR4302544.665225/1‑94 (MQ=60)

              ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTT                                                                                  <  SRR4302544.1086362/94‑1 (MQ=60)

                TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTAC                                                                                <  SRR4302544.662162/94‑1 (MQ=60)

                 ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACG                                                                               <  SRR4302544.2856029/94‑1 (MQ=60)

                  CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCC‑‑CCCC‑‑‑AAACCATTCCTTACG                                                                               <  SRR4302544.327415/94‑1 (MQ=60)

                  CAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGC                                                                              >  SRR4302544.114914/1‑94 (MQ=60)

                    GTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTA                                                                            <  SRR4302544.713737/94‑1 (MQ=60)

                     TGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTAT                                                                           <  SRR4302544.3483765/94‑1 (MQ=60)

                     TGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTAT                                                                           <  SRR4302544.2776983/94‑1 (MQ=60)

                       GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTG                                                                         <  SRR4302544.2356656/94‑1 (MQ=60)

                             CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTT                                                                   <  SRR4302544.3913611/94‑1 (MQ=60)

                             CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTT                                                                   >  SRR4302544.1360061/1‑94 (MQ=60)

                             CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTT                                                                   <  SRR4302544.2313054/94‑1 (MQ=60)

                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTA                                                                  <  SRR4302544.3261559/94‑1 (MQ=60)

                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTA                                                                  >  SRR4302544.993656/1‑94 (MQ=60)

                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CC‑‑CCCCCCAAAACCATTCCTTACGCTATTGAACGTT                                                                   >  SRR4302544.2077415/1‑94 (MQ=60)

                               GGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTAT                                                                 <  SRR4302544.1167780/94‑1 (MQ=60)

                                 CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCA                                                               >  SRR4302544.2170053/1‑94 (MQ=60)

                                   GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGG                                                             <  SRR4302544.1913881/94‑1 (MQ=60)

                                     TAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTT                                                           <  SRR4302544.4507730/94‑1 (MQ=60)

                                         CGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAA                                                       >  SRR4302544.1908863/1‑94 (MQ=60)

                                          GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                      <  SRR4302544.1380046/94‑1 (MQ=60)

                                           GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                                     >  SRR4302544.2714285/1‑94 (MQ=60)

                                           GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                                     >  SRR4302544.2854964/1‑94 (MQ=60)

                                           GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                                     <  SRR4302544.2902282/94‑1 (MQ=60)

                                             CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCA                                                   >  SRR4302544.1972705/1‑94 (MQ=60)

                                              TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAG                                                  <  SRR4302544.2159905/94‑1 (MQ=60)

                                               GGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGC                                                 <  SRR4302544.3470352/94‑1 (MQ=60)

                                                GGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCG                                                <  SRR4302544.3551377/94‑1 (MQ=60)

                                                GGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCG                                                >  SRR4302544.3215915/1‑94 (MQ=60)

                                                   GCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                             <  SRR4302544.1694704/94‑1 (MQ=60)

                                                   CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                             >  SRR4302544.4532949/1‑94 (MQ=60)

                                                   CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                             <  SRR4302544.117870/94‑1 (MQ=60)

                                                   CCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                             <  SRR4302544.117871/94‑1 (MQ=60)

                                                      ATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA                                          >  SRR4302544.4382207/1‑94 (MQ=60)

                                                      ATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA                                          >  SRR4302544.2734595/1‑94 (MQ=60)

                                                         CTTGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTCTACCA                                       >  SRR4302544.1737109/1‑94 (MQ=60)

                                                           TGGGCAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATG                                     <  SRR4302544.2127379/94‑1 (MQ=60)

                                                               CAAAATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACT                                 >  SRR4302544.1168483/1‑94 (MQ=60)

                                                                  AATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG                              >  SRR4302544.3189417/1‑94 (MQ=60)

                                                                   ATCATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGC                             >  SRR4302544.151665/1‑94 (MQ=60)

                                                                    ACATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCA                            <  SRR4302544.1342894/94‑1 (MQ=60)

                                                                     CATCATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                           >  SRR4302544.3057120/1‑94 (MQ=60)

                                                                     CATCATTTTAATCACGCAGC‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG                          <  SRR4302544.1188014/94‑1 (MQ=60)

                                                                        CATTTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG                        <  SRR4302544.300818/94‑1 (MQ=60)

                                                                           TTTAATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT                     <  SRR4302544.3377589/94‑1 (MQ=60)

                                                                              AATCACGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA                  >  SRR4302544.1047452/1‑94 (MQ=60)

                                                                                   CGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT             >  SRR4302544.1108597/1‑94 (MQ=60)

                                                                                   CGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT             >  SRR4302544.2789562/1‑94 (MQ=60)

                                                                                   CGCAGCC‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAAAT             >  SRR4302544.2554184/1‑94 (MQ=60)

                                                                                       C‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT       <  SRR4302544.3101354/94‑1 (MQ=60)

                                                                                       C‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT       <  SRR4302544.290130/94‑1 (MQ=60)

                                                                                       C‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT       <  SRR4302544.3686967/94‑1 (MQ=60)

                                                                                       C‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT       >  SRR4302544.3273575/1‑94 (MQ=60)

                                                                                       C‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT       <  SRR4302544.1730963/94‑1 (MQ=60)

                                                                                       C‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT       >  SRR4302544.2077870/1‑94 (MQ=60)

                                                                                       C‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT       <  SRR4302544.3498776/94‑1 (MQ=60)

                                                                                         ccCC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC        >  SRR4302544.3373569/3‑94 (MQ=60)

                                                                                           CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGATCGTTATCAGGTTGAACCTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG      <  SRR4302544.4247644/94‑1 (MQ=60)

                                                                                            C‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGG     >  SRR4302544.2780977/1‑94 (MQ=60)

                                                                                               CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACGCGCCCTGGC    >  SRR4302544.2929067/1‑94 (MQ=60)

                                                                                                CCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT   <  SRR4302544.4551404/94‑1 (MQ=60)

                                                                                                CCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT   <  SRR4302544.1260037/94‑1 (MQ=60)

                                                                                                 CC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG  >  SRR4302544.3323727/1‑94 (MQ=60)

                                                                                                 CC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG  >  SRR4302544.3820878/1‑94 (MQ=60)

                                                                                                 CC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG  >  SRR4302544.740404/1‑94 (MQ=60)

GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑CC‑‑CCCC‑‑‑AAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTG  >  NC_000913/2418917‑2419102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`