Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  NC_000913/2418917‑2419103
                                                                                                  |                                                                                             
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCC                                                                                               <  SRR4302536.5742501/94‑1 (MQ=60)
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCC                                                                                               >  SRR4302536.5688975/1‑94 (MQ=60)
 AGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCCC                                                                                              <  SRR4302536.835942/94‑1 (MQ=60)
 AGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCCC                                                                                              >  SRR4302536.3730498/1‑94 (MQ=60)
   CGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCCcca                                                                                            <  SRR4302536.3547470/94‑4 (MQ=60)
   CGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCCcca                                                                                            <  SRR4302536.1000266/94‑4 (MQ=60)
    GCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCCccaa                                                                                           <  SRR4302536.2019696/94‑5 (MQ=60)
      GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAAC                                                                                           <  SRR4302536.4150996/94‑1 (MQ=60)
          CCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATT                                                                                       <  SRR4302536.15087/94‑1 (MQ=60)
           CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTC                                                                                      >  SRR4302536.1004531/1‑94 (MQ=60)
             GATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCT                                                                                    >  SRR4302536.6910291/1‑94 (MQ=60)
             CATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCAGGCAGCC‑C‑‑CCCCCAAACCATTCCT                                                                                    >  SRR4302536.4949726/1‑94 (MQ=60)
             CATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCT                                                                                    >  SRR4302536.4604785/1‑94 (MQ=60)
              ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTT                                                                                   <  SRR4302536.3622268/94‑1 (MQ=60)
              ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTGTAATCAAGCAGCC‑C‑‑CCCCCAAACCATTCCTT                                                                                   <  SRR4302536.6279830/94‑1 (MQ=60)
               TTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTA                                                                                  <  SRR4302536.6045285/94‑1 (MQ=60)
                TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTAC                                                                                 <  SRR4302536.3611760/94‑1 (MQ=60)
                 ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACG                                                                                >  SRR4302536.5485975/1‑94 (MQ=60)
                 ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACG                                                                                <  SRR4302536.68409/94‑1 (MQ=60)
                 ACAGTGGTTATTCGGGCAGGAAGGCGGATTGGGCCGGATGCTTGGGAAAAATCATAATTTTAATCCCGCAGCC‑C‑‑CCCCCAAACCATTCCTTACG                                                                                <  SRR4302536.4098570/94‑1 (MQ=42)
                  CAGTGGTTATTCTGGCAGGGAGGCGGACTGGGGCCCATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGC                                                                               >  SRR4302536.1573597/1‑94 (MQ=60)
                   AGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCT                                                                              <  SRR4302536.5925495/94‑1 (MQ=60)
                    GTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTA                                                                             <  SRR4302536.1360701/94‑1 (MQ=60)
                     TGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTAT                                                                            <  SRR4302536.3024223/94‑1 (MQ=60)
                       GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTG                                                                          <  SRR4302536.2984724/94‑1 (MQ=60)
                        TTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGA                                                                         <  SRR4302536.3746654/94‑1 (MQ=60)
                         TATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCCTTTTAATCACGCAG‑‑‑CCACCCCCAAAACCTTCCCTACGCTATTGTA                                                                        >  SRR4302536.1623410/1‑94 (MQ=60)
                         TATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAA                                                                        >  SRR4302536.6450840/1‑94 (MQ=60)
                          ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAAC                                                                       <  SRR4302536.3614991/94‑1 (MQ=60)
                           TTCTGGCGGGGGGGCGGACTGGGGCCTATGTTGGGGAAAATTCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACG                                                                      <  SRR4302536.2147864/94‑1 (MQ=48)
                             CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTT                                                                    <  SRR4302536.3443300/94‑1 (MQ=60)
                             CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTT                                                                    <  SRR4302536.5253138/94‑1 (MQ=60)
                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTA                                                                   <  SRR4302536.3543678/94‑1 (MQ=60)
                               GGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTAT                                                                  <  SRR4302536.6079073/94‑1 (MQ=60)
                                 CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                                >  SRR4302536.1468433/1‑94 (MQ=60)
                                 CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                                <  SRR4302536.419036/94‑1 (MQ=60)
                                 CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                                >  SRR4302536.3550651/1‑94 (MQ=60)
                                  AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                               <  SRR4302536.5144333/94‑1 (MQ=60)
                                  AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                               <  SRR4302536.3106037/94‑1 (MQ=60)
                                  AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                               >  SRR4302536.4408457/1‑94 (MQ=60)
                                  AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                               <  SRR4302536.1238091/94‑1 (MQ=60)
                                   GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGG                                                              <  SRR4302536.5938892/94‑1 (MQ=60)
                                   GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGG                                                              <  SRR4302536.5209265/94‑1 (MQ=60)
                                      AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG                                                           <  SRR4302536.2376748/94‑1 (MQ=60)
                                      AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG                                                           >  SRR4302536.4222877/1‑94 (MQ=60)
                                      AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG                                                           <  SRR4302536.1550731/94‑1 (MQ=60)
                                        GCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAA                                                         >  SRR4302536.5621847/1‑94 (MQ=60)
                                        GCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAA                                                         >  SRR4302536.3417895/1‑94 (MQ=60)
                                        GCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAA                                                         >  SRR4302536.1066995/1‑94 (MQ=60)
                                          GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTAAGCTATTGAACGTTATCAGGTTGAAAC                                                       <  SRR4302536.4496520/94‑1 (MQ=60)
                                           GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGGAGCC‑C‑‑CCCCCAAGCCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                                      <  SRR4302536.6784977/94‑1 (MQ=60)
                                           GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                                      <  SRR4302536.6132211/94‑1 (MQ=60)
                                            ACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCC‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                                      >  SRR4302536.5301759/1‑94 (MQ=60)
                                            ACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAtta                                                     >  SRR4302536.3174584/1‑91 (MQ=60)
                                             CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTTAAACTCA                                                    >  SRR4302536.518810/1‑94 (MQ=60)
                                              TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGCTGAAACTCAG                                                   >  SRR4302536.544601/1‑94 (MQ=60)
                                               GGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGG                                                  >  SRR4302536.3840776/1‑94 (MQ=60)
                                                 GGGCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGT                                                <  SRR4302536.391579/94‑1 (MQ=60)
                                                    CGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT                                             >  SRR4302536.380730/1‑94 (MQ=60)
                                                    CGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT                                             >  SRR4302536.5638472/1‑94 (MQ=60)
                                                    CGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT                                             >  SRR4302536.6840352/1‑94 (MQ=60)
                                                     GATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTT                                            <  SRR4302536.306985/94‑1 (MQ=60)
                                                      ATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA                                           >  SRR4302536.2248797/1‑94 (MQ=60)
                                                      ATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA                                           >  SRR4302536.4306088/1‑94 (MQ=60)
                                                       TGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC                                          >  SRR4302536.82949/1‑94 (MQ=60)
                                                        GCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACC                                         <  SRR4302536.5490367/94‑1 (MQ=60)
                                                          TTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCAT                                       <  SRR4302536.2117437/94‑1 (MQ=60)
                                                          TTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCAT                                       <  SRR4302536.517761/94‑1 (MQ=60)
                                                           TGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTTAGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAACATG                                      >  SRR4302536.4718723/1‑94 (MQ=60)
                                                           TGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATT                                      >  SRR4302536.5219148/1‑94 (MQ=60)
                                                           TGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATG                                      <  SRR4302536.1490915/94‑1 (MQ=60)
                                                            GGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGT                                     >  SRR4302536.1213526/1‑94 (MQ=60)
                                                            GGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGT                                     <  SRR4302536.3778753/94‑1 (MQ=60)
                                                               CAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACT                                  >  SRR4302536.6156319/1‑94 (MQ=60)
                                                               CAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACT                                  >  SRR4302536.6245079/1‑94 (MQ=60)
                                                               CAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACT                                  >  SRR4302536.117912/1‑94 (MQ=60)
                                                                 AAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGA                                >  SRR4302536.4975547/1‑94 (MQ=60)
                                                                 AAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGA                                >  SRR4302536.5612777/1‑94 (MQ=60)
                                                                  AATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG                               <  SRR4302536.4977924/94‑1 (MQ=60)
                                                                  AATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG                               >  SRR4302536.2214074/1‑94 (MQ=60)
                                                                     CATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                            >  SRR4302536.6870646/1‑94 (MQ=60)
                                                                     CATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                            >  SRR4302536.6467020/1‑94 (MQ=60)
                                                                      ATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAGCCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG                           <  SRR4302536.6328074/94‑1 (MQ=60)
                                                                      ATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG                           <  SRR4302536.5816907/94‑1 (MQ=60)
                                                                      ATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG                           <  SRR4302536.553912/94‑1 (MQ=60)
                                                                        CATTTTGAGCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAACCTCAGCGTCTTTACCATGTACTGAGCAAGCG                         <  SRR4302536.875046/94‑1 (MQ=60)
                                                                        CATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG                         <  SRR4302536.4012236/94‑1 (MQ=60)
                                                                        CATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG                         <  SRR4302536.2174678/94‑1 (MQ=60)
                                                                           TTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT                      >  SRR4302536.6256038/1‑94 (MQ=60)
                                                                            TTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTG                     <  SRR4302536.4722804/94‑1 (MQ=60)
                                                                            TTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTG                     <  SRR4302536.2092866/94‑1 (MQ=60)
                                                                              AATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA                   >  SRR4302536.3379782/1‑94 (MQ=60)
                                                                              AATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA                   >  SRR4302536.6060833/1‑94 (MQ=60)
                                                                               ATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACCCTATTGAACGTTATCAGGTTGAAACTAAGCGCCTTTACCATGTACTGAGCAAGCGGCTGGAA                  >  SRR4302536.3018692/1‑94 (MQ=60)
                                                                                TCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAA                 <  SRR4302536.2740357/94‑1 (MQ=60)
                                                                                TCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAA                 >  SRR4302536.3031791/1‑94 (MQ=60)
                                                                                   ccgcagccC‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAAC               <  SRR4302536.2932096/86‑1 (MQ=60)
                                                                                   CGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT              <  SRR4302536.5549995/94‑1 (MQ=60)
                                                                                      cagccC‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCG            >  SRR4302536.752732/6‑94 (MQ=60)
                                                                                      cagccC‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCG            <  SRR4302536.590323/89‑1 (MQ=60)
                                                                                      cagccC‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACACG            >  SRR4302536.144381/6‑94 (MQ=60)
                                                                                       agccC‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAAATCGC           >  SRR4302536.5055932/5‑94 (MQ=60)
                                                                                       C‑‑‑C‑‑CCCCCAACCCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT        <  SRR4302536.723650/94‑1 (MQ=60)
                                                                                       C‑‑‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT        <  SRR4302536.6431347/94‑1 (MQ=60)
                                                                                       C‑‑‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT        <  SRR4302536.6934462/94‑1 (MQ=60)
                                                                                       C‑‑‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT        <  SRR4302536.5803988/94‑1 (MQ=60)
                                                                                         ccC‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC         >  SRR4302536.365273/3‑94 (MQ=60)
                                                                                           C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG       <  SRR4302536.5077088/94‑1 (MQ=60)
                                                                                           C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTCAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG       <  SRR4302536.1257384/94‑1 (MQ=60)
                                                                                              CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGG      <  SRR4302536.6115736/94‑1 (MQ=60)
                                                                                              CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGG      >  SRR4302536.5996397/1‑94 (MQ=60)
                                                                                               CCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGC     >  SRR4302536.3052522/1‑94 (MQ=60)
                                                                                               CCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGC     >  SRR4302536.6906265/1‑94 (MQ=60)
                                                                                               CCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGC     >  SRR4302536.4263133/1‑94 (MQ=60)
                                                                                               CCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGC     <  SRR4302536.5379449/94‑1 (MQ=60)
                                                                                                CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGTGGCTGGAAAAtctgccctcgct    >  SRR4302536.757401/1‑82 (MQ=60)
                                                                                                CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT    <  SRR4302536.4226614/94‑1 (MQ=60)
                                                                                                CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT    <  SRR4302536.142729/94‑1 (MQ=60)
                                                                                                CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT    <  SRR4302536.5914810/94‑1 (MQ=60)
                                                                                                 CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG   >  SRR4302536.630046/1‑94 (MQ=60)
                                                                                                 CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG   <  SRR4302536.4158508/94‑1 (MQ=60)
                                                                                                  CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  SRR4302536.2189272/1‑94 (MQ=60)
                                                                                                  CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  SRR4302536.5293446/1‑94 (MQ=60)
                                                                                                  |                                                                                             
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  NC_000913/2418917‑2419103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑