Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_000913 2,419,010 (C)6→9 coding (370/648 nt) yfcG → putative S‑transferase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 24190042 (0.010)197 (0.780)
+CCC		 97/166 1.3 99.0% coding (364/648 nt) yfcG putative S‑transferase
?NC_000913 2419005 = 2 (0.010)coding (365/648 nt) yfcG putative S‑transferase

Only 100 of 221 total aligned reads displayed.

GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2418913‑2419004
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCC  >  NC_000913/2419005‑2419096
                                                                                            |||                                                                                            
GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGC                                                                                                >  2:4441635/1‑93
GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGC                                                                                                >  1:5753112/1‑93
GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGC                                                                                                <  2:5782070/93‑1
 CGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC                                                                                               >  1:6112382/1‑93
   TGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCC                                                                                             <  1:5318853/93‑1
   TGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCC                                                                                             >  2:6610983/1‑93
    GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCC                                                                                            <  1:5576518/93‑1
     AGCGCGCCGCCACATTACAGTGGTTATTCTGGCTGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCC                                                                                           <  2:5526392/93‑1
     AGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCC                                                                                           <  1:812116/93‑1
     AGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCC                                                                                           <  2:4672621/93‑1
      GCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCC                                                                                          >  1:3622194/1‑93
       CGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCC                                                                                         <  1:971596/93‑1
       CGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCC                                                                                         <  1:3444877/93‑1
        GCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCa                                                                                        >  2:4100221/1‑92
        GCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCa                                                                                        <  1:1960741/93‑2
          GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCAAA                                                                                      <  1:4031431/93‑1
              CCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCAT                                                                                 <  1:14666/93‑1
                ACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTC                                                                               <  2:5083047/93‑1
                 CATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCC                                                                              <  2:2456305/93‑1
                  ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCAGGCAG‑CCCCCCCCAAACCATTCCT                                                                             >  1:4805104/1‑93
                  ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCT                                                                             <  1:3517221/93‑1
                  ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCT                                                                             >  1:6711040/1‑93
                  ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCT                                                                             <  2:3476751/93‑1
                    TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTA                                                                           <  1:3507087/93‑1
                     ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTAC                                                                          <  1:66594/93‑1
                       AGTGGTTATTCTGTCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGC                                                                        <  2:3622931/93‑1
                        GTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCT                                                                       <  1:1321259/93‑1
                        GTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCT                                                                       >  2:1817836/1‑93
                         TGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTA                                                                      <  1:2937561/93‑1
                           GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATT                                                                    >  2:3191061/1‑93
                            TTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTG                                                                   <  2:1689669/93‑1
                              ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCCTTTTAATCACGCAGCCACCCCCAAAACC‑TTCCCTACGCTATTGta                                                                 >  1:1577186/1‑91
                              ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAA                                                                 >  1:6264218/1‑93
                                 CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGT                                                              <  2:401037/93‑1
                                 CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGT                                                              <  2:1077392/93‑1
                                 CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGT                                                              <  1:5100628/93‑1
                                 CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGT                                                              >  2:645381/1‑93
                                      AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                         <  1:4994430/93‑1
                                      AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                         >  2:3404548/1‑93
                                      AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                         >  1:1426070/1‑93
                                       GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                        <  1:5057767/93‑1
                                       GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                        >  1:4280733/1‑93
                                       GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                        <  2:6344397/93‑1
                                       GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                        >  2:800272/1‑93
                                          AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTT                                                     <  2:2904639/93‑1
                                          AGGCGGACTGGGGCCGATGCTTGAGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTT                                                     >  2:765464/1‑93
                                           GGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG                                                    >  2:3585455/1‑93
                                           GGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG                                                    >  1:4101215/1‑93
                                            GCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGA                                                   <  2:5681028/93‑1
                                            GCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGA                                                   >  2:1925144/1‑93
                                             CGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAA                                                  >  2:2081786/1‑93
                                             CGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAA                                                  >  1:1036242/1‑93
                                             CGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAA                                                  >  1:3319761/1‑93
                                              GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAA                                                 <  2:1489904/93‑1
                                               GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGGAG‑CCCCCCCCAAGCCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                <  1:6588969/93‑1
                                               GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAC                                                <  1:5954790/93‑1
                                                 CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                               >  1:5148140/1‑93
                                                 CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAtta                                              >  1:3084360/1‑90
                                                     gggCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCG                                          <  1:381528/90‑1
                                                        CGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCT                                       <  2:2393336/93‑1
                                                         GATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT                                      >  2:1032971/1‑93
                                                         GATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT                                      <  1:299038/93‑1
                                                         GATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT                                      >  1:5474935/1‑93
                                                           TGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA                                    >  2:1625193/1‑93
                                                           TGCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA                                    >  1:2182996/1‑93
                                                            GCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATNNGGTTGAAACTCAGCGNCTTNAC                                   >  2:5277330/1‑93
                                                            GCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC                                   <  2:6555180/93‑1
                                                            GCTTGGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC                                   <  1:5331092/93‑1
                                                                GGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTTAGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAACATG                               >  1:4581217/1‑93
                                                                GGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATG                               <  1:3669069/93‑1
                                                                GGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATG                               >  2:4163011/1‑93
                                                                GGGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATG                               <  2:3931617/93‑1
                                                                 GGCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGT                              >  1:1178054/1‑93
                                                                  GCAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTA                             >  2:479018/1‑93
                                                                   CAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTAC                            <  2:1593729/93‑1
                                                                   CAAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTAC                            <  2:5447860/93‑1
                                                                    AAAATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACT                           >  1:6064171/1‑93
                                                                      AATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGA                         <  1:4832507/93‑1
                                                                      AATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGA                         <  2:1185054/93‑1
                                                                       ATCATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAg                        <  2:5880764/93‑2
                                                                          ATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                     <  1:5649049/93‑1
                                                                          ATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                     <  2:4412369/93‑1
                                                                          ATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                     <  1:540126/93‑1
                                                                          ATCATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                     <  2:3037128/93‑1
                                                                            CATTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGC                   <  1:2111228/93‑1
                                                                              TTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGG                 >  2:3920160/1‑93
                                                                              TTTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGG                 >  2:281724/1‑93
                                                                               TTTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGC                <  2:6390768/93‑1
                                                                                TTAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT               <  1:2031681/93‑1
                                                                                 TAATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTG              <  2:6268167/93‑1
                                                                                   ATCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA            >  1:5885539/1‑93
                                                                                    TCACGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAA           >  2:6189159/1‑93
                                                                                      cCGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAA         <  1:2847879/92‑1
                                                                                       CGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAAC        >  2:324243/1‑93
                                                                                       CGCAG‑CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAAC        >  2:520392/1‑93
                                                                                         gcagCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT       >  2:2860426/5‑93
                                                                                          cagCCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTC      <  1:575701/90‑1
                                                                                             CCCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCC   <  2:1991031/93‑1
                                                                                              CCCCCCCAACCCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC  <  1:703119/93‑1
                                                                                              CCCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC  >  2:3880440/1‑93
                                                                                            |||                                                                                            
GCGTGAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2418913‑2419004
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCC  >  NC_000913/2419005‑2419096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  NC_000913/2418917‑2419103
                                                                                                  |                                                                                             
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCC                                                                                               <  SRR4302536.5742501/94‑1 (MQ=60)
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCC                                                                                               >  SRR4302536.5688975/1‑94 (MQ=60)
 AGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCCC                                                                                              <  SRR4302536.835942/94‑1 (MQ=60)
 AGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCCC                                                                                              >  SRR4302536.3730498/1‑94 (MQ=60)
   CGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCCcca                                                                                            <  SRR4302536.3547470/94‑4 (MQ=60)
   CGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCCcca                                                                                            <  SRR4302536.1000266/94‑4 (MQ=60)
    GCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCCccaa                                                                                           <  SRR4302536.2019696/94‑5 (MQ=60)
      GCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAAC                                                                                           <  SRR4302536.4150996/94‑1 (MQ=60)
          CCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATT                                                                                       <  SRR4302536.15087/94‑1 (MQ=60)
           CACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTC                                                                                      >  SRR4302536.1004531/1‑94 (MQ=60)
             GATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCT                                                                                    >  SRR4302536.6910291/1‑94 (MQ=60)
             CATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCAGGCAGCC‑C‑‑CCCCCAAACCATTCCT                                                                                    >  SRR4302536.4949726/1‑94 (MQ=60)
             CATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCT                                                                                    >  SRR4302536.4604785/1‑94 (MQ=60)
              ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTT                                                                                   <  SRR4302536.3622268/94‑1 (MQ=60)
              ATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTGTAATCAAGCAGCC‑C‑‑CCCCCAAACCATTCCTT                                                                                   <  SRR4302536.6279830/94‑1 (MQ=60)
               TTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTA                                                                                  <  SRR4302536.6045285/94‑1 (MQ=60)
                TACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTAC                                                                                 <  SRR4302536.3611760/94‑1 (MQ=60)
                 ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACG                                                                                >  SRR4302536.5485975/1‑94 (MQ=60)
                 ACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACG                                                                                <  SRR4302536.68409/94‑1 (MQ=60)
                 ACAGTGGTTATTCGGGCAGGAAGGCGGATTGGGCCGGATGCTTGGGAAAAATCATAATTTTAATCCCGCAGCC‑C‑‑CCCCCAAACCATTCCTTACG                                                                                <  SRR4302536.4098570/94‑1 (MQ=42)
                  CAGTGGTTATTCTGGCAGGGAGGCGGACTGGGGCCCATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGC                                                                               >  SRR4302536.1573597/1‑94 (MQ=60)
                   AGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCT                                                                              <  SRR4302536.5925495/94‑1 (MQ=60)
                    GTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTA                                                                             <  SRR4302536.1360701/94‑1 (MQ=60)
                     TGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTAT                                                                            <  SRR4302536.3024223/94‑1 (MQ=60)
                       GTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTG                                                                          <  SRR4302536.2984724/94‑1 (MQ=60)
                        TTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGA                                                                         <  SRR4302536.3746654/94‑1 (MQ=60)
                         TATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCCTTTTAATCACGCAG‑‑‑CCACCCCCAAAACCTTCCCTACGCTATTGTA                                                                        >  SRR4302536.1623410/1‑94 (MQ=60)
                         TATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAA                                                                        >  SRR4302536.6450840/1‑94 (MQ=60)
                          ATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAAC                                                                       <  SRR4302536.3614991/94‑1 (MQ=60)
                           TTCTGGCGGGGGGGCGGACTGGGGCCTATGTTGGGGAAAATTCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACG                                                                      <  SRR4302536.2147864/94‑1 (MQ=48)
                             CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTT                                                                    <  SRR4302536.3443300/94‑1 (MQ=60)
                             CTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTT                                                                    <  SRR4302536.5253138/94‑1 (MQ=60)
                              TGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTA                                                                   <  SRR4302536.3543678/94‑1 (MQ=60)
                               GGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTAT                                                                  <  SRR4302536.6079073/94‑1 (MQ=60)
                                 CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                                >  SRR4302536.1468433/1‑94 (MQ=60)
                                 CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                                <  SRR4302536.419036/94‑1 (MQ=60)
                                 CAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCA                                                                >  SRR4302536.3550651/1‑94 (MQ=60)
                                  AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                               <  SRR4302536.5144333/94‑1 (MQ=60)
                                  AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                               <  SRR4302536.3106037/94‑1 (MQ=60)
                                  AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                               >  SRR4302536.4408457/1‑94 (MQ=60)
                                  AGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAG                                                               <  SRR4302536.1238091/94‑1 (MQ=60)
                                   GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGG                                                              <  SRR4302536.5938892/94‑1 (MQ=60)
                                   GGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGG                                                              <  SRR4302536.5209265/94‑1 (MQ=60)
                                      AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG                                                           <  SRR4302536.2376748/94‑1 (MQ=60)
                                      AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG                                                           >  SRR4302536.4222877/1‑94 (MQ=60)
                                      AGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTG                                                           <  SRR4302536.1550731/94‑1 (MQ=60)
                                        GCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAA                                                         >  SRR4302536.5621847/1‑94 (MQ=60)
                                        GCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAA                                                         >  SRR4302536.3417895/1‑94 (MQ=60)
                                        GCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAA                                                         >  SRR4302536.1066995/1‑94 (MQ=60)
                                          GGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTAAGCTATTGAACGTTATCAGGTTGAAAC                                                       <  SRR4302536.4496520/94‑1 (MQ=60)
                                           GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGGAGCC‑C‑‑CCCCCAAGCCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                                      <  SRR4302536.6784977/94‑1 (MQ=60)
                                           GACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                                      <  SRR4302536.6132211/94‑1 (MQ=60)
                                            ACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCCCC‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACT                                                      >  SRR4302536.5301759/1‑94 (MQ=60)
                                            ACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAAtta                                                     >  SRR4302536.3174584/1‑91 (MQ=60)
                                             CTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTTAAACTCA                                                    >  SRR4302536.518810/1‑94 (MQ=60)
                                              TGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGCTGAAACTCAG                                                   >  SRR4302536.544601/1‑94 (MQ=60)
                                               GGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGG                                                  >  SRR4302536.3840776/1‑94 (MQ=60)
                                                 GGGCGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGT                                                <  SRR4302536.391579/94‑1 (MQ=60)
                                                    CGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT                                             >  SRR4302536.380730/1‑94 (MQ=60)
                                                    CGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT                                             >  SRR4302536.5638472/1‑94 (MQ=60)
                                                    CGATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTT                                             >  SRR4302536.6840352/1‑94 (MQ=60)
                                                     GATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTT                                            <  SRR4302536.306985/94‑1 (MQ=60)
                                                      ATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA                                           >  SRR4302536.2248797/1‑94 (MQ=60)
                                                      ATGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTA                                           >  SRR4302536.4306088/1‑94 (MQ=60)
                                                       TGCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAC                                          >  SRR4302536.82949/1‑94 (MQ=60)
                                                        GCTTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACC                                         <  SRR4302536.5490367/94‑1 (MQ=60)
                                                          TTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCAT                                       <  SRR4302536.2117437/94‑1 (MQ=60)
                                                          TTGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCAT                                       <  SRR4302536.517761/94‑1 (MQ=60)
                                                           TGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTTAGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTAACATG                                      >  SRR4302536.4718723/1‑94 (MQ=60)
                                                           TGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATT                                      >  SRR4302536.5219148/1‑94 (MQ=60)
                                                           TGGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATG                                      <  SRR4302536.1490915/94‑1 (MQ=60)
                                                            GGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGT                                     >  SRR4302536.1213526/1‑94 (MQ=60)
                                                            GGGCAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGT                                     <  SRR4302536.3778753/94‑1 (MQ=60)
                                                               CAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACT                                  >  SRR4302536.6156319/1‑94 (MQ=60)
                                                               CAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACT                                  >  SRR4302536.6245079/1‑94 (MQ=60)
                                                               CAAAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACT                                  >  SRR4302536.117912/1‑94 (MQ=60)
                                                                 AAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGA                                >  SRR4302536.4975547/1‑94 (MQ=60)
                                                                 AAATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGA                                >  SRR4302536.5612777/1‑94 (MQ=60)
                                                                  AATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG                               <  SRR4302536.4977924/94‑1 (MQ=60)
                                                                  AATCATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAG                               >  SRR4302536.2214074/1‑94 (MQ=60)
                                                                     CATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                            >  SRR4302536.6870646/1‑94 (MQ=60)
                                                                     CATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAA                            >  SRR4302536.6467020/1‑94 (MQ=60)
                                                                      ATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAGCCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG                           <  SRR4302536.6328074/94‑1 (MQ=60)
                                                                      ATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG                           <  SRR4302536.5816907/94‑1 (MQ=60)
                                                                      ATCATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAG                           <  SRR4302536.553912/94‑1 (MQ=60)
                                                                        CATTTTGAGCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAACCTCAGCGTCTTTACCATGTACTGAGCAAGCG                         <  SRR4302536.875046/94‑1 (MQ=60)
                                                                        CATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG                         <  SRR4302536.4012236/94‑1 (MQ=60)
                                                                        CATTTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCG                         <  SRR4302536.2174678/94‑1 (MQ=60)
                                                                           TTTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCT                      >  SRR4302536.6256038/1‑94 (MQ=60)
                                                                            TTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTG                     <  SRR4302536.4722804/94‑1 (MQ=60)
                                                                            TTAATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTG                     <  SRR4302536.2092866/94‑1 (MQ=60)
                                                                              AATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA                   >  SRR4302536.3379782/1‑94 (MQ=60)
                                                                              AATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGA                   >  SRR4302536.6060833/1‑94 (MQ=60)
                                                                               ATCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACCCTATTGAACGTTATCAGGTTGAAACTAAGCGCCTTTACCATGTACTGAGCAAGCGGCTGGAA                  >  SRR4302536.3018692/1‑94 (MQ=60)
                                                                                TCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAA                 <  SRR4302536.2740357/94‑1 (MQ=60)
                                                                                TCACGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAA                 >  SRR4302536.3031791/1‑94 (MQ=60)
                                                                                   ccgcagccC‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAAC               <  SRR4302536.2932096/86‑1 (MQ=60)
                                                                                   CGCAGCC‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACT              <  SRR4302536.5549995/94‑1 (MQ=60)
                                                                                      cagccC‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCG            >  SRR4302536.752732/6‑94 (MQ=60)
                                                                                      cagccC‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCG            <  SRR4302536.590323/89‑1 (MQ=60)
                                                                                      cagccC‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACACG            >  SRR4302536.144381/6‑94 (MQ=60)
                                                                                       agccC‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAAATCGC           >  SRR4302536.5055932/5‑94 (MQ=60)
                                                                                       C‑‑‑C‑‑CCCCCAACCCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT        <  SRR4302536.723650/94‑1 (MQ=60)
                                                                                       C‑‑‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT        <  SRR4302536.6431347/94‑1 (MQ=60)
                                                                                       C‑‑‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT        <  SRR4302536.6934462/94‑1 (MQ=60)
                                                                                       C‑‑‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCT        <  SRR4302536.5803988/94‑1 (MQ=60)
                                                                                         ccC‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCC         >  SRR4302536.365273/3‑94 (MQ=60)
                                                                                           C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG       <  SRR4302536.5077088/94‑1 (MQ=60)
                                                                                           C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTCAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTG       <  SRR4302536.1257384/94‑1 (MQ=60)
                                                                                              CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGG      <  SRR4302536.6115736/94‑1 (MQ=60)
                                                                                              CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGG      >  SRR4302536.5996397/1‑94 (MQ=60)
                                                                                               CCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGC     >  SRR4302536.3052522/1‑94 (MQ=60)
                                                                                               CCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGC     >  SRR4302536.6906265/1‑94 (MQ=60)
                                                                                               CCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGC     >  SRR4302536.4263133/1‑94 (MQ=60)
                                                                                               CCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGC     <  SRR4302536.5379449/94‑1 (MQ=60)
                                                                                                CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGTGGCTGGAAAAtctgccctcgct    >  SRR4302536.757401/1‑82 (MQ=60)
                                                                                                CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT    <  SRR4302536.4226614/94‑1 (MQ=60)
                                                                                                CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT    <  SRR4302536.142729/94‑1 (MQ=60)
                                                                                                CCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCT    <  SRR4302536.5914810/94‑1 (MQ=60)
                                                                                                 CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG   >  SRR4302536.630046/1‑94 (MQ=60)
                                                                                                 CCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTG   <  SRR4302536.4158508/94‑1 (MQ=60)
                                                                                                  CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  SRR4302536.2189272/1‑94 (MQ=60)
                                                                                                  CAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAGCAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  SRR4302536.5293446/1‑94 (MQ=60)
                                                                                                  |                                                                                             
GAGCGCGCCGCCACATTACAGTGGTTATTCTGGCAGGTAGGCGGACTGGGGCCGATGCTTGGGCAAAATCATCATTTTAATCACGCAG‑‑‑C‑‑CCCCCAAACCATTCCTTACGCTATTGAACGTTATCAGGTTGAAACTCAGCGTCTTTACCATGTACTGAACAAGCGGCTGGAAAACTCGCCCTGGCTGG  >  NC_000913/2418917‑2419103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑