Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1357	179.3	9500450	96.1%	9129932	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,438,697	A→C	L310R (CTG→CGG)	fabB ←	3‑oxoacyl‑[acyl‑carrier‑protein] synthase I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,438,697	0	A	C	99.2%	375.8 / ‑4.7	117	L310R (CTG→CGG)	fabB	3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
Reads supporting (aligned to +/- strand): ref base A (0/1); new base C (57/59); total (57/60)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.06e-01

Only 100 of 122 total aligned reads displayed.

GCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCAGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATG  >  NC_000913/2438609‑2438786

gCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGctc                                                                                       >  1:3346476/1‑93 (MQ=255)

 ccAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGctct                                                                                      <  1:2645858/93‑1 (MQ=255)

  cagcagCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGCTAGCTGCCCGctctc                                                                                     >  1:2115871/1‑92 (MQ=255)

   agcagcGCGCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCttt                                                                                    <  1:4584388/93‑1 (MQ=255)

   agcagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCttt                                                                                    <  1:665992/93‑1 (MQ=255)

   agcagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCttt                                                                                    <  1:4584389/93‑1 (MQ=255)

   agcagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCttt                                                                                    <  1:447890/93‑1 (MQ=255)

   agcagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCttt                                                                                    <  1:4172396/93‑1 (MQ=255)

    gcagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCttta                                                                                   >  1:2528696/1‑92 (MQ=255)

    gcagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTc                                                                                   <  1:2425886/93‑1 (MQ=255)

     cagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCa                                                                                  <  1:1143538/93‑1 (MQ=255)

      agcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAc                                                                                 >  1:2059556/1‑93 (MQ=255)

      agcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAc                                                                                 <  1:1621955/93‑1 (MQ=255)

      agcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAc                                                                                 <  1:3354801/93‑1 (MQ=255)

       gcgcCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCAGCTCTTTCACg                                                                                <  2:2342243/93‑1 (MQ=255)

         gcCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTc                                                                              <  1:1141790/93‑1 (MQ=255)

           ccAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGc                                                                            >  1:1314108/1‑93 (MQ=255)

             agagagTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCa                                                                          >  2:4690162/1‑93 (MQ=255)

               agagTGCCGTGTCATGACTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGACCACTTCCCGGATAGCTGCCCGCTCTTTCACGTCGCCAAc                                                                        <  2:1815631/93‑1 (MQ=255)

                  gTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCgg                                                                     >  1:3635881/1‑93 (MQ=255)

                  gTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCgg                                                                     >  1:3635882/1‑93 (MQ=255)

                   tGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGa                                                                    <  1:1491864/93‑1 (MQ=255)

                   tGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGa                                                                    <  1:3130228/93‑1 (MQ=255)

                     gccGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGt                                                                  <  1:2343826/92‑1 (MQ=255)

                     aCCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAgc                                                                  >  2:1117159/1‑92 (MQ=255)

                     aCCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAgc                                                                  >  2:730627/1‑92 (MQ=255)

                     aCCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGt                                                                  <  2:2970565/93‑1 (MQ=255)

                      ccGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTc                                                                 <  2:2183409/93‑1 (MQ=255)

                      ccGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTc                                                                 <  2:2982103/93‑1 (MQ=255)

                         gTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGaa                                                              <  2:1345509/93‑1 (MQ=255)

                          tCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAg                                                             >  1:3808271/1‑93 (MQ=255)

                           cATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGt                                                            >  2:3839398/1‑93 (MQ=255)

                             tGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTAc                                                          <  1:4240913/93‑1 (MQ=255)

                              tgCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTAcc                                                         <  2:1159711/92‑1 (MQ=255)

                               gCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCg                                                        >  1:4048187/1‑93 (MQ=255)

                                cTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGTAGTCGAAGTACCGt                                                       >  2:1408408/1‑93 (MQ=255)

                                 tttGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTg                                                      <  2:584811/93‑1 (MQ=255)

                                 tttGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTg                                                      >  1:408056/1‑93 (MQ=255)

                                  ttGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTgg                                                     >  2:2044092/1‑93 (MQ=255)

                                    ggTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGa                                                   <  2:2016995/93‑1 (MQ=255)

                                    ggTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGa                                                   <  1:4541634/93‑1 (MQ=255)

                                    gcgtGCAGAACTCGCCGGGCGCTTATCGCCGAACACTTCGCGGATAGCTGCCCGCTCTTTCACGGCTCCAACCGGAGTCGAAGTACCGGGGGa                                                   <  2:2939125/90‑1 (MQ=255)

                                       tGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGtt                                                >  2:2041443/1‑93 (MQ=255)

                                        gCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTc                                               >  2:2461458/1‑93 (MQ=255)

                                         cAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCa                                              <  2:908848/93‑1 (MQ=255)

                                          aGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGCGTTCAg                                             >  2:2377539/1‑93 (MQ=255)

                                          aGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAg                                             <  2:3753075/93‑1 (MQ=255)

                                           gAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAgg                                            >  1:4163895/1‑93 (MQ=255)

                                             aaTCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTa                                          >  1:3782898/1‑93 (MQ=255)

                                             aaTCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTa                                          >  2:3838177/1‑93 (MQ=255)

                                               tCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAAt                                        <  1:4706514/93‑1 (MQ=255)

                                               tCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAAt                                        <  2:4100469/93‑1 (MQ=255)

                                                 gCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCg                                      >  2:1714359/1‑93 (MQ=255)

                                                  ccGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTGATCGa                                     <  2:3914951/93‑1 (MQ=255)

                                                  ccGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTCATCgt                                     >  1:2284360/1‑92 (MQ=255)

                                                  ccGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGa                                     <  1:4149313/93‑1 (MQ=255)

                                                  ccGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAAACGGAGTCGAAGTACCGTGGGAGGTCGGATAATCGa                                     >  2:3739912/1‑93 (MQ=255)

                                                    gggCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGAtt                                   >  1:2279759/1‑93 (MQ=255)

                                                     ggCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTg                                  <  2:2583644/93‑1 (MQ=255)

                                                     ggCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTg                                  >  1:1391525/1‑93 (MQ=255)

                                                        tctTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTgggg                               <  2:1383338/93‑1 (MQ=255)

                                                         ctTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCG‑GGGAGTTCAGGTAATCGATTGGGGtt                             >  1:698362/1‑92 (MQ=255)

                                                            aTCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATc                           <  2:3713280/93‑1 (MQ=255)

                                                             tCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCa                          >  1:3600735/1‑93 (MQ=255)

                                                              cgacGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCaa                         <  2:1221049/90‑1 (MQ=255)

                                                              cGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCaa                         <  2:2528539/93‑1 (MQ=255)

                                                              cGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAATACCGTGGGAGTTCAGGTAATCGATTGGGGTATCaa                         <  2:2528540/93‑1 (MQ=255)

                                                               gCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAAc                        >  2:4114786/1‑93 (MQ=255)

                                                                ccGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACg                       >  1:4548704/1‑93 (MQ=255)

                                                                  gAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGcc                     <  1:3829252/93‑1 (MQ=255)

                                                                  gAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGcc                     >  2:1021440/1‑93 (MQ=255)

                                                                   aaCACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGccc                    >  1:359731/1‑92 (MQ=255)

                                                                   aaCACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCa                    <  1:2458325/93‑1 (MQ=255)

                                                                   aaCACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCa                    >  1:1194064/1‑93 (MQ=255)

                                                                   aaCACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCa                    <  1:4275023/93‑1 (MQ=255)

                                                                   aaCACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCa                    <  2:2538092/93‑1 (MQ=255)

                                                                   aaCACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCa                    >  1:359732/1‑93 (MQ=255)

                                                                   aaCACTTCACGGATAGCTGCACGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCa                    <  2:4729548/93‑1 (MQ=255)

                                                                    acacTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCAt                   <  1:2740878/93‑1 (MQ=255)

                                                                     cacTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATg                  >  1:3548236/1‑93 (MQ=255)

                                                                      acTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGc                 >  1:2043483/1‑93 (MQ=255)

                                                                      acTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGc                 <  1:3687158/93‑1 (MQ=255)

                                                                      acTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGc                 <  1:3687318/93‑1 (MQ=255)

                                                                      acTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGc                 >  1:2043482/1‑93 (MQ=255)

                                                                       cTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCa                >  1:639632/1‑93 (MQ=255)

                                                                           aCGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGc            >  2:2388984/1‑93 (MQ=255)

                                                                                tAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCt       >  2:3446502/1‑93 (MQ=255)

                                                                                tAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCt       <  2:4570839/93‑1 (MQ=255)

                                                                                tAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGACATGCATCGCCATCt       >  2:4454283/1‑93 (MQ=255)

                                                                                  gCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTc     <  1:3084535/93‑1 (MQ=255)

                                                                                   cTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCa    >  2:1144482/1‑93 (MQ=255)

                                                                                   cTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCa    <  2:819669/93‑1 (MQ=255)

                                                                                   cTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCa    >  1:3144755/1‑93 (MQ=255)

                                                                                   cTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCa    >  1:1410733/1‑93 (MQ=255)

                                                                                    tGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCAt   >  2:4378902/1‑93 (MQ=255)

                                                                                    tGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCAt   <  1:1516024/93‑1 (MQ=255)

                                                                                    tGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGCAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCAt   >  2:2651233/1‑93 (MQ=255)

                                                                                    cgCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCAt   <  1:405140/92‑1 (MQ=255)

                                                                                     gCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATg  >  1:1170262/1‑93 (MQ=255)

                                                                                     gCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATg  >  1:1983446/1‑93 (MQ=255)

GCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCAGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATG  >  NC_000913/2438609‑2438786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCAGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCAG  >  NC_000913/2438608‑2438789

CGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTC                                                                                          >  SRR4302544.3378395/1‑94 (MQ=60)

  CCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGCTAGCTGCCCGCTCTC                                                                                        >  SRR4302544.2136195/1‑94 (MQ=60)

  CCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTT                                                                                        <  SRR4302544.2671234/94‑1 (MQ=60)

   CAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTT                                                                                       <  SRR4302544.1375133/94‑1 (MQ=60)

    AGCAGCGCGCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTC                                                                                      <  SRR4302544.4630031/94‑1 (MQ=60)

    AGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTC                                                                                      <  SRR4302544.672567/94‑1 (MQ=60)

    AGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTC                                                                                      >  SRR4302544.431146/1‑94 (MQ=60)

    AGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTC                                                                                      <  SRR4302544.452347/94‑1 (MQ=60)

    AGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTC                                                                                      <  SRR4302544.4630032/94‑1 (MQ=60)

    AGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTC                                                                                      <  SRR4302544.4213724/94‑1 (MQ=60)

    AGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTA                                                                                      >  SRR4302544.2552996/1‑94 (MQ=60)

     GCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCA                                                                                     <  SRR4302544.2448977/94‑1 (MQ=60)

      CAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAC                                                                                    >  SRR4302544.2079365/1‑94 (MQ=60)

      CAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAC                                                                                    <  SRR4302544.1154909/94‑1 (MQ=60)

       AGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACG                                                                                   <  SRR4302544.1637935/94‑1 (MQ=60)

       AGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACG                                                                                   <  SRR4302544.3386814/94‑1 (MQ=60)

          GCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCG                                                                                <  SRR4302544.1153144/94‑1 (MQ=60)

           CCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGC                                                                               >  SRR4302544.1327028/1‑94 (MQ=60)

             CAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCA                                                                             >  SRR4302544.3821989/1‑94 (MQ=60)

                  AGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGG                                                                        >  SRR4302544.3672142/1‑94 (MQ=60)

                  AGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGG                                                                        >  SRR4302544.3672143/1‑94 (MQ=60)

                    TGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAG                                                                      <  SRR4302544.3159969/94‑1 (MQ=60)

                    TGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAG                                                                      <  SRR4302544.1506618/94‑1 (MQ=60)

                      GCCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTC                                                                    <  SRR4302544.2366027/94‑1 (MQ=60)

                          GTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAG                                                                >  SRR4302544.3846008/1‑94 (MQ=60)

                              TGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACC                                                            <  SRR4302544.2451691/94‑1 (MQ=60)

                              TGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACC                                                            <  SRR4302544.4284135/94‑1 (MQ=60)

                               GGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCG                                                           >  SRR4302544.4088507/1‑94 (MQ=60)

                                 CTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTG                                                         >  SRR4302544.412207/1‑94 (MQ=60)

                                 CTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGCACCGTG                                                         >  SRR4302544.412206/1‑94 (MQ=60)

                                    TGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGA                                                      >  SRR4302544.1838597/1‑94 (MQ=60)

                                     GGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAG                                                     <  SRR4302544.4587022/94‑1 (MQ=60)

                                        TGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTC                                                  >  SRR4302544.4627114/1‑94 (MQ=60)

                                           AGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGG                                               >  SRR4302544.4205142/1‑94 (MQ=60)

                                             AAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTA                                             >  SRR4302544.3820363/1‑94 (MQ=60)

                                                TCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATC                                          <  SRR4302544.4753020/94‑1 (MQ=60)

                                                  GCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTCATCGT                                        >  SRR4302544.2305891/1‑94 (MQ=60)

                                                   CCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGAT                                       <  SRR4302544.4190397/94‑1 (MQ=60)

                                                    CGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATT                                      >  SRR4302544.2301240/1‑94 (MQ=60)

                                                     GGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTG                                     >  SRR4302544.1405418/1‑94 (MQ=60)

                                                       GCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGG                                   <  SRR4302544.3667970/94‑1 (MQ=60)

                                                         TCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCG‑GGGAGTTCAGGTAATCGATTGGGGTT                                >  SRR4302544.705318/1‑94 (MQ=60)

                                                             ATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCA                             >  SRR4302544.3635524/1‑94 (MQ=60)

                                                                GCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACG                          >  SRR4302544.4594130/1‑94 (MQ=60)

                                                                  CGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCC                        >  SRR4302544.693864/1‑94 (MQ=60)

                                                                   GAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCC                       >  SRR4302544.363414/1‑94 (MQ=60)

                                                                   GAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCA                       >  SRR4302544.363415/1‑94 (MQ=60)

                                                                   GAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCA                       <  SRR4302544.3867222/94‑1 (MQ=60)

                                                                   GAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCA                       >  SRR4302544.1205910/1‑94 (MQ=60)

                                                                    AACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCAT                      <  SRR4302544.2481777/94‑1 (MQ=60)

                                                                    AACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCAT                      <  SRR4302544.2094741/94‑1 (MQ=60)

                                                                    AACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCAT                      <  SRR4302544.4318669/94‑1 (MQ=60)

                                                                     ACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATG                     >  SRR4302544.3582217/1‑94 (MQ=60)

                                                                     ACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATG                     <  SRR4302544.2767300/94‑1 (MQ=60)

                                                                      CACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGC                    >  SRR4302544.2063188/1‑94 (MQ=60)

                                                                      CACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGC                    >  SRR4302544.2063189/1‑94 (MQ=60)

                                                                       ACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCA                   <  SRR4302544.3724073/94‑1 (MQ=60)

                                                                       ACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCA                   >  SRR4302544.645937/1‑94 (MQ=60)

                                                                       ACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCA                   <  SRR4302544.3723913/94‑1 (MQ=60)

                                                                       ACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGGAATCGATTGGGGTATCAACGCCATGCA                   >  SRR4302544.347510/1‑94 (MQ=60)

                                                                                ATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTGGAAGTACCGTGGGGGTTCAGGTACTCGATTGGGGGATCAACGCCACGCATCCCCATCT          >  SRR4302544.1274211/1‑94 (MQ=60)

                                                                                   GCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCA       <  SRR4302544.3113917/94‑1 (MQ=60)

                                                                                   GCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCA       >  SRR4302544.1424782/1‑94 (MQ=60)

                                                                                   GCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCA       >  SRR4302544.3174654/1‑94 (MQ=60)

                                                                                     TGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATG     >  SRR4302544.2819191/1‑94 (MQ=60)

                                                                                     TGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATG     >  SRR4302544.2002705/1‑94 (MQ=60)

                                                                                     TGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATG     <  SRR4302544.1531059/94‑1 (MQ=60)

                                                                                     TGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATG     >  SRR4302544.1181936/1‑94 (MQ=60)

                                                                                        CCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCAG  <  SRR4302544.603068/94‑1 (MQ=60)

CGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCAGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCAG  >  NC_000913/2438608‑2438789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`