Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,438,697 A→C L310R (CTG→CGG)  fabB ← 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,438,6970AC100.0% 723.5 / NA 225L310R (CTG→CGG) fabB3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (111/114);  total (111/114)

Only 100 of 226 total aligned reads displayed.

ACGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCAGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATG  >  NC_000913/2438607‑2438786
                                                                                          |                                                                                         
aCGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGc                                                                                         <  1:2038395/93‑1 (MQ=255)
 cGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGct                                                                                        <  2:4355108/93‑1 (MQ=255)
  gCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGctc                                                                                       <  2:4192804/93‑1 (MQ=255)
  gCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGctc                                                                                       >  1:4733245/1‑93 (MQ=255)
   ccAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGctct                                                                                      >  1:1735956/1‑93 (MQ=255)
     agcagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCttt                                                                                    <  2:5958384/93‑1 (MQ=255)
      gcagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTc                                                                                   >  1:4604880/1‑93 (MQ=255)
       cagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCa                                                                                  <  1:6263824/93‑1 (MQ=255)
       cagcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCa                                                                                  <  1:3702860/93‑1 (MQ=255)
        agcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAc                                                                                 >  2:5083278/1‑93 (MQ=255)
        agcGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAc                                                                                 >  1:4426124/1‑93 (MQ=255)
            cccAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCg                                                                             >  2:633915/1‑93 (MQ=255)
             ccAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGc                                                                            >  2:4776070/1‑93 (MQ=255)
              cAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGcc                                                                           >  1:3900841/1‑93 (MQ=255)
              cAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGcc                                                                           <  1:4963729/93‑1 (MQ=255)
              cAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGcc                                                                           >  1:4488868/1‑93 (MQ=255)
               agagagTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCa                                                                          <  2:2326727/93‑1 (MQ=255)
               agagagTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCa                                                                          >  2:1860655/1‑93 (MQ=255)
                gagagTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCaa                                                                         <  2:6553184/93‑1 (MQ=255)
                gagagTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCaa                                                                         >  2:5235464/1‑93 (MQ=255)
                gagagTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCCCTCTTTCACGTCGCCaa                                                                         >  2:3593754/1‑93 (MQ=255)
                  gagTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAAcc                                                                       >  1:2656975/1‑93 (MQ=255)
                     tGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGa                                                                    >  1:754221/1‑93 (MQ=255)
                       aCCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGt                                                                  <  1:3038832/93‑1 (MQ=255)
                        ccGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTc                                                                 >  2:2388591/1‑93 (MQ=255)
                         cGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCg                                                                >  2:2940323/1‑93 (MQ=255)
                            tCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAg                                                             <  1:232050/93‑1 (MQ=255)
                            tCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAg                                                             <  1:800100/93‑1 (MQ=255)
                              aTGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTa                                                           >  1:2738330/1‑93 (MQ=255)
                               tGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTAc                                                          <  1:4035739/93‑1 (MQ=255)
                               tGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTAc                                                          >  1:2517495/1‑93 (MQ=255)
                                ggCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTAcc                                                         <  2:1373530/93‑1 (MQ=255)
                                ggCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTAcc                                                         >  2:5338279/1‑93 (MQ=255)
                                 gCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCg                                                        <  1:1796630/93‑1 (MQ=255)
                                  cTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGt                                                       <  1:5526728/93‑1 (MQ=255)
                                   tttGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTg                                                      <  1:43506/93‑1 (MQ=255)
                                   tttGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTg                                                      >  1:4272338/1‑93 (MQ=255)
                                    ttGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTgg                                                     <  2:1986696/93‑1 (MQ=255)
                                      ggTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGa                                                   <  1:4864461/93‑1 (MQ=255)
                                      ggTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGa                                                   >  2:5558227/1‑93 (MQ=255)
                                      ggTGGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGa                                                   <  2:5094947/93‑1 (MQ=255)
                                        ttGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGt                                                 <  1:2080041/93‑1 (MQ=255)
                                        ttGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGt                                                 >  2:1903164/1‑93 (MQ=255)
                                         tGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGtt                                                <  2:3428261/93‑1 (MQ=255)
                                         tGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGtt                                                >  1:3862590/1‑93 (MQ=255)
                                         tGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGtt                                                <  1:2950621/93‑1 (MQ=255)
                                            aGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAg                                             <  1:519542/93‑1 (MQ=255)
                                            aGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAg                                             <  2:4502241/93‑1 (MQ=255)
                                            aGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGCTCAg                                             >  1:2860165/1‑93 (MQ=255)
                                             gAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAgg                                            >  2:1481459/1‑93 (MQ=255)
                                             gAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAgg                                            >  2:6234563/1‑93 (MQ=255)
                                              aaaTCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGt                                           <  2:758386/93‑1 (MQ=255)
                                               aaTCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTa                                          >  2:1740128/1‑93 (MQ=255)
                                               aaTCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGCTCAggaa                                          >  1:2483172/1‑91 (MQ=255)
                                                aTCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTaa                                         >  1:3956804/1‑93 (MQ=255)
                                                aTCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTaa                                         >  1:2436223/1‑93 (MQ=255)
                                                aTCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTaa                                         <  2:1043943/93‑1 (MQ=255)
                                                  cGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATc                                       <  1:3250435/93‑1 (MQ=255)
                                                  cGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATc                                       <  1:4969037/93‑1 (MQ=255)
                                                  cGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATc                                       <  2:1168458/93‑1 (MQ=255)
                                                  cGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATc                                       <  1:4060530/93‑1 (MQ=255)
                                                   gCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCg                                      <  1:927429/93‑1 (MQ=255)
                                                    ccGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGa                                     <  1:822949/93‑1 (MQ=255)
                                                     cGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGAt                                    <  2:3078181/93‑1 (MQ=255)
                                                     cGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGAt                                    <  1:684972/93‑1 (MQ=255)
                                                      gggCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGAtt                                   <  2:575391/93‑1 (MQ=255)
                                                      gggCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGAtt                                   <  1:133510/93‑1 (MQ=255)
                                                      gggCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGAtt                                   <  2:787266/93‑1 (MQ=255)
                                                       ggCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTg                                  >  1:6359448/1‑93 (MQ=255)
                                                        gCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTgg                                 <  2:2455468/93‑1 (MQ=255)
                                                        gCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTgg                                 <  2:2816184/93‑1 (MQ=255)
                                                        gCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTgg                                 >  1:6630787/1‑93 (MQ=255)
                                                          tctTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGGTCAGGTAATCGATTgggg                               >  1:1063607/1‑93 (MQ=255)
                                                           ctTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGt                              >  2:1623605/1‑93 (MQ=255)
                                                              agcGCAGAACTCTTCACGGATAGCCGCCGGCTCTTTCACGTCGCCACCCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATc                           <  1:6406208/91‑1 (MQ=255)
                                                              aTCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATc                           >  1:1685950/1‑93 (MQ=255)
                                                                cGCCGAACACTTCACGCATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCaa                         <  1:158059/93‑1 (MQ=255)
                                                                 gCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAAc                        >  1:3316542/1‑93 (MQ=255)
                                                                  ccGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACg                       <  2:692487/93‑1 (MQ=255)
                                                                  ccGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACg                       <  2:5866021/93‑1 (MQ=255)
                                                                   cGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGc                      <  1:5851987/93‑1 (MQ=255)
                                                                    gAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGcc                     >  2:3481045/1‑93 (MQ=255)
                                                                    gAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGcc                     <  1:414957/93‑1 (MQ=255)
                                                                    gAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGGTCAGGTAATCGATTGGGGTATCAACGcc                     >  1:1460541/1‑93 (MQ=255)
                                                                     aaCACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCa                    >  1:6109994/1‑93 (MQ=255)
                                                                     aaCACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCa                    >  1:5728506/1‑93 (MQ=255)
                                                                      acacTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCAt                   >  1:3202116/1‑93 (MQ=255)
                                                                          ttCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCAt               >  1:3569915/1‑93 (MQ=255)
                                                                           tCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGGATCAACGCCATGCATc              >  2:6363731/1‑93 (MQ=255)
                                                                            cACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCg             <  2:2173657/93‑1 (MQ=255)
                                                                             aCGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGc            >  1:1301041/1‑93 (MQ=255)
                                                                             aCGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGc            <  2:4842963/93‑1 (MQ=255)
                                                                               ggATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCa          <  2:3991889/93‑1 (MQ=255)
                                                                                gATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCAt         <  1:2053211/93‑1 (MQ=255)
                                                                                  tAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCt       >  2:4577143/1‑93 (MQ=255)
                                                                                    gCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTc     <  1:3494720/93‑1 (MQ=255)
                                                                                     cTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCa    <  1:6183347/93‑1 (MQ=255)
                                                                                      tGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCAt   >  1:2172671/1‑93 (MQ=255)
                                                                                      tGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCAt   <  2:2534578/93‑1 (MQ=255)
                                                                                       gCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATg  <  1:5634511/93‑1 (MQ=255)
                                                                                          |                                                                                         
ACGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCAGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATG  >  NC_000913/2438607‑2438786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGTACGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCAGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCAGC  >  NC_000913/2438604‑2438790
                                                                                             |                                                                                             
TGTACGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCC                                                                                               >  SRR4302536.5991786/1‑94 (MQ=60)
TGTACGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCC                                                                                               <  SRR4302536.1435216/94‑1 (MQ=60)
TGTACGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCC                                                                                               <  SRR4302536.1584510/94‑1 (MQ=60)
   ACGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCT                                                                                            <  SRR4302536.2099790/94‑1 (MQ=60)
    CGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTC                                                                                           >  SRR4302536.4875693/1‑94 (MQ=60)
     GCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCT                                                                                          >  SRR4302536.1810277/1‑94 (MQ=60)
     GCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCT                                                                                          >  SRR4302536.1786021/1‑94 (MQ=60)
      CCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTT                                                                                         <  SRR4302536.4067240/94‑1 (MQ=60)
       CAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTT                                                                                        <  SRR4302536.3100439/94‑1 (MQ=60)
        AGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTC                                                                                       >  SRR4302536.4743175/1‑94 (MQ=60)
        AGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTC                                                                                       <  SRR4302536.255756/94‑1 (MQ=60)
         GCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCA                                                                                      <  SRR4302536.5115268/94‑1 (MQ=60)
          CAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAC                                                                                     <  SRR4302536.3813592/94‑1 (MQ=60)
          CAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAC                                                                                     <  SRR4302536.1998877/94‑1 (MQ=60)
          CAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAC                                                                                     >  SRR4302536.4890335/1‑94 (MQ=60)
          CAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAC                                                                                     <  SRR4302536.6450434/94‑1 (MQ=60)
          CAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCAC                                                                                     >  SRR4302536.4558731/1‑94 (MQ=60)
              GCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCG                                                                                 <  SRR4302536.1569495/94‑1 (MQ=60)
               CCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGC                                                                                >  SRR4302536.3400157/1‑94 (MQ=60)
               CCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGC                                                                                >  SRR4302536.3656358/1‑94 (MQ=60)
                CCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCC                                                                               <  SRR4302536.4717199/94‑1 (MQ=60)
                CCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCC                                                                               >  SRR4302536.4623663/1‑94 (MQ=60)
                CCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCC                                                                               >  SRR4302536.4016806/1‑94 (MQ=60)
                 CAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCA                                                                              <  SRR4302536.1361595/94‑1 (MQ=60)
                 CAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCA                                                                              <  SRR4302536.5112843/94‑1 (MQ=60)
                 CAGAGAGTGACCGGTCATGGCTTTGGTTGCAAAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCA                                                                              >  SRR4302536.911814/1‑94 (MQ=60)
                  AGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAA                                                                             >  SRR4302536.3862936/1‑94 (MQ=60)
                  AGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAA                                                                             <  SRR4302536.6312196/94‑1 (MQ=60)
                  AGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAA                                                                             >  SRR4302536.2283891/1‑94 (MQ=60)
                    AGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGCTAGCTGCTCGCTCTTTCACGTCGCCAACC                                                                           >  SRR4302536.6882628/1‑94 (MQ=60)
                    AGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACC                                                                           <  SRR4302536.639061/94‑1 (MQ=60)
                    AGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACC                                                                           >  SRR4302536.2736508/1‑94 (MQ=60)
                    AGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACC                                                                           >  SRR4302536.4160723/1‑94 (MQ=60)
                      AGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGG                                                                         >  SRR4302536.3990362/1‑94 (MQ=60)
                      AGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGG                                                                         <  SRR4302536.4160884/94‑1 (MQ=60)
                      AGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGG                                                                         >  SRR4302536.3120506/1‑94 (MQ=60)
                       GTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGA                                                                        >  SRR4302536.5290715/1‑94 (MQ=60)
                       GTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGA                                                                        >  SRR4302536.776346/1‑94 (MQ=60)
                        TGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATATCTGCCCGCTCTTTCACGTCGCCAACCGGAG                                                                       <  SRR4302536.4267722/94‑1 (MQ=60)
                          ACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTC                                                                     <  SRR4302536.3128183/94‑1 (MQ=60)
                          ACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTC                                                                     <  SRR4302536.6488219/94‑1 (MQ=60)
                              GTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAG                                                                 >  SRR4302536.2542491/1‑94 (MQ=60)
                              GTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAG                                                                 <  SRR4302536.539625/94‑1 (MQ=60)
                               TCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGT                                                                <  SRR4302536.3903897/94‑1 (MQ=60)
                               TCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGT                                                                <  SRR4302536.735085/94‑1 (MQ=60)
                               TCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGT                                                                <  SRR4302536.238225/94‑1 (MQ=60)
                               TCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGT                                                                <  SRR4302536.823560/94‑1 (MQ=60)
                                CATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTA                                                               >  SRR4302536.2819920/1‑94 (MQ=60)
                                CATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAAACGGAGTCGAAGTA                                                               >  SRR4302536.4482525/1‑94 (MQ=60)
                                 ATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTAC                                                              >  SRR4302536.2593397/1‑94 (MQ=60)
                                 ATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTAC                                                              >  SRR4302536.1773825/1‑94 (MQ=60)
                                  TGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACC                                                             >  SRR4302536.3422833/1‑94 (MQ=60)
                                  TGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACC                                                             <  SRR4302536.4155415/94‑1 (MQ=60)
                                    GCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGT                                                           <  SRR4302536.1850873/94‑1 (MQ=60)
                                     CTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTG                                                          <  SRR4302536.5691516/94‑1 (MQ=60)
                                     CTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTG                                                          >  SRR4302536.4399692/1‑94 (MQ=60)
                                      TTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGG                                                         <  SRR4302536.44713/94‑1 (MQ=60)
                                         GGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAG                                                      <  SRR4302536.6271437/94‑1 (MQ=60)
                                         GGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAG                                                      <  SRR4302536.5010852/94‑1 (MQ=60)
                                          GTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGT                                                     <  SRR4302536.4519775/94‑1 (MQ=60)
                                          GTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGT                                                     <  SRR4302536.6475852/94‑1 (MQ=60)
                                           TTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTT                                                    <  SRR4302536.2142674/94‑1 (MQ=60)
                                           TTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTT                                                    >  SRR4302536.3977529/1‑94 (MQ=60)
                                            TGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTC                                                   <  SRR4302536.3037590/94‑1 (MQ=60)
                                              CAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGCTCAG                                                 >  SRR4302536.2944699/1‑94 (MQ=60)
                                               AGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGG                                                <  SRR4302536.6144267/94‑1 (MQ=60)
                                               AGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGG                                                <  SRR4302536.532860/94‑1 (MQ=60)
                                                 AAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGCTCAGGAA                                              >  SRR4302536.2558088/1‑94 (MQ=60)
                                                  AATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAA                                             >  SRR4302536.2509873/1‑94 (MQ=60)
                                                  AATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAA                                             >  SRR4302536.4074308/1‑94 (MQ=60)
                                                   ATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAAT                                            >  SRR4302536.5751811/1‑94 (MQ=60)
                                                    TCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATC                                           <  SRR4302536.6596352/94‑1 (MQ=60)
                                                    TCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATC                                           >  SRR4302536.2600107/1‑94 (MQ=60)
                                                    ACGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATC                                           <  SRR4302536.980524/94‑1 (MQ=60)
                                                     CGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCG                                          <  SRR4302536.3705441/94‑1 (MQ=60)
                                                     CGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCG                                          <  SRR4302536.4180883/94‑1 (MQ=60)
                                                     CGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCG                                          <  SRR4302536.5118301/94‑1 (MQ=60)
                                                     CGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCG                                          <  SRR4302536.3345735/94‑1 (MQ=60)
                                                     CGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGATCAGGTAATCG                                          >  SRR4302536.3495513/1‑94 (MQ=60)
                                                     CGCAGGGCTCTTATCGCCGAACCCTTCACGGATAGCTGCCCGCGCTTTCACGTCGCCAACCGGAGTCGAAGTACCTTGGGAGTTCAGGTAATCG                                          <  SRR4302536.2076419/94‑1 (MQ=60)
                                                      GCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGA                                         <  SRR4302536.954751/94‑1 (MQ=60)
                                                       CCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGAT                                        >  SRR4302536.711171/1‑94 (MQ=60)
                                                       CCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGAT                                        <  SRR4302536.847174/94‑1 (MQ=60)
                                                        CGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATT                                       <  SRR4302536.705032/94‑1 (MQ=60)
                                                         GGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTG                                      <  SRR4302536.137019/94‑1 (MQ=60)
                                                         GGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTG                                      >  SRR4302536.6548916/1‑94 (MQ=60)
                                                          GGCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGG                                     >  SRR4302536.6828018/1‑94 (MQ=60)
                                                           GCTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGG                                    <  SRR4302536.4763345/94‑1 (MQ=60)
                                                            CTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGG                                   <  SRR4302536.6796383/94‑1 (MQ=60)
                                                            CTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGG                                   <  SRR4302536.5019245/94‑1 (MQ=60)
                                                            CTCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGGTCAGGTAATCGATTGGGG                                   >  SRR4302536.1095421/1‑94 (MQ=60)
                                                             TCTTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGT                                  >  SRR4302536.2227026/1‑94 (MQ=60)
                                                               TTATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTTGGAGGTCAGGTAATCGCTTGGGGTAT                                >  SRR4302536.4326867/1‑94 (MQ=60)
                                                                TATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATC                               >  SRR4302536.1734797/1‑94 (MQ=60)
                                                                 ATCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCA                              <  SRR4302536.223414/94‑1 (MQ=60)
                                                                 AGCGCAGAACTCTTCACGGATAGCCGCCGGCTCTTTCACGTCGCCACCCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCA                              <  SRR4302536.6597464/94‑1 (MQ=60)
                                                                  TCGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAA                             <  SRR4302536.5596502/94‑1 (MQ=60)
                                                                   CGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAAC                            >  SRR4302536.1733649/1‑94 (MQ=60)
                                                                   CGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAAC                            >  SRR4302536.3414579/1‑94 (MQ=60)
                                                                   CGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAAC                            >  SRR4302536.1145257/1‑94 (MQ=60)
                                                                   CGCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAAC                            <  SRR4302536.4575714/94‑1 (MQ=60)
                                                                   CGCCGAACACTTCACGCATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAAC                            <  SRR4302536.162151/94‑1 (MQ=60)
                                                                    GCCGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACG                           >  SRR4302536.804694/1‑94 (MQ=60)
                                                                      CGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCC                         >  SRR4302536.2814418/1‑94 (MQ=60)
                                                                      CGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCC                         <  SRR4302536.6026338/94‑1 (MQ=60)
                                                                      CGAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGGTCAGGTAATCGATTGGGGTATCAACGCC                         >  SRR4302536.1503758/1‑94 (MQ=60)
                                                                       GAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCA                        <  SRR4302536.425902/94‑1 (MQ=60)
                                                                       GAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCA                        >  SRR4302536.5898881/1‑94 (MQ=60)
                                                                       GAACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCA                        >  SRR4302536.6292134/1‑94 (MQ=60)
                                                                        AACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCAT                       >  SRR4302536.3296021/1‑94 (MQ=60)
                                                                        AACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCAT                       >  SRR4302536.4100680/1‑94 (MQ=60)
                                                                        AACACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGCTCAGGTAATCGATTGGGGTATCAACGTCAT                       >  SRR4302536.5864065/1‑94 (MQ=60)
                                                                         ACACTTCACGGATAGCTGCCCGGTCTTTCACGTCGCCAACCGGAGTCGAAGCACCGTGGTAGTTCAGGTAATCGATTTGGGGATCAACGCCATG                      >  SRR4302536.828541/1‑94 (MQ=60)
                                                                         ACACTACGCGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATG                      <  SRR4302536.1614632/94‑1 (MQ=60)
                                                                          CACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGC                     >  SRR4302536.3288732/1‑94 (MQ=60)
                                                                           ACTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAGCCGGAGTCGAAGTGCCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCA                    <  SRR4302536.3014563/94‑1 (MQ=60)
                                                                            CTTCACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCAT                   >  SRR4302536.3676644/1‑94 (MQ=60)
                                                                               CACGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGC                >  SRR4302536.1339917/1‑94 (MQ=60)
                                                                                AGGGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCC               <  SRR4302536.2391562/94‑1 (MQ=60)
                                                                                  GGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCAT             <  SRR4302536.2116456/94‑1 (MQ=60)
                                                                                  GGATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCAT             >  SRR4302536.3338460/1‑94 (MQ=60)
                                                                                   GATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATC            <  SRR4302536.2115050/94‑1 (MQ=60)
                                                                                    ATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCT           >  SRR4302536.4444379/1‑94 (MQ=60)
                                                                                    ATAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCT           >  SRR4302536.2930637/1‑94 (MQ=60)
                                                                                     TAGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTT          <  SRR4302536.1019977/94‑1 (MQ=60)
                                                                                      AGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTC         >  SRR4302536.4988817/1‑94 (MQ=60)
                                                                                      AGCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTC         >  SRR4302536.1909742/1‑94 (MQ=60)
                                                                                       GCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCA        <  SRR4302536.263738/94‑1 (MQ=60)
                                                                                       GCTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCA        <  SRR4302536.3598985/94‑1 (MQ=60)
                                                                                        CTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCAT       <  SRR4302536.5952012/94‑1 (MQ=60)
                                                                                        CTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCAT       >  SRR4302536.2104718/1‑94 (MQ=60)
                                                                                        CTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCAT       >  SRR4302536.2238100/1‑94 (MQ=60)
                                                                                        CTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCAT       <  SRR4302536.6367508/94‑1 (MQ=60)
                                                                                        CTGCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCAT       >  SRR4302536.1387183/1‑94 (MQ=60)
                                                                                          GCCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGC     <  SRR4302536.5801892/94‑1 (MQ=60)
                                                                                           CCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCA    <  SRR4302536.2658200/94‑1 (MQ=60)
                                                                                           CCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCA    <  SRR4302536.2892438/94‑1 (MQ=60)
                                                                                           CCCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCA    <  SRR4302536.1119121/94‑1 (MQ=60)
                                                                                            CCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCAG   <  SRR4302536.2907695/94‑1 (MQ=60)
                                                                                            CCGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCAG   <  SRR4302536.1425543/94‑1 (MQ=60)
                                                                                             CGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCAGC  <  SRR4302536.2778791/94‑1 (MQ=60)
                                                                                             |                                                                                             
TGTACGCCAGCAGCGCCCAGAGAGTGACCGGTCATGGCTTTGGTTGCAGAAATCGCCGGGCTCTTATCGCCGAACACTTCACGGATAGCTGCCAGCTCTTTCACGTCGCCAACCGGAGTCGAAGTACCGTGGGAGTTCAGGTAATCGATTGGGGTATCAACGCCATGCATCGCCATCTTCATGCAGC  >  NC_000913/2438604‑2438790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑