Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,393,906 |
T→C |
intergenic (‑4243/+57) |
tldD ← / ← cafA |
TldD/CafA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,393,906 | 0 | T | C | 96.7%
| 563.9
/ 4.9
| 183 | intergenic (‑4243/+57) | tldD/cafA | TldD/CafA |
| Reads supporting (aligned to +/- strand): ref base T (3/3); new base C (90/87); total (93/90) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
Only 100 of 190 total aligned reads displayed.
CGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTAT > NC_000913/3393816‑3393997
|
cggCCGCTAACCAGCAGGGCAGAGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCt < 2:3583810/92‑1 (MQ=255)
aGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCt < 1:1832014/93‑1 (MQ=255)
aGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGCAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCt > 1:765803/1‑93 (MQ=255)
ggCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTg > 2:1034983/1‑93 (MQ=255)
ggCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTg > 2:4686737/1‑93 (MQ=255)
ggCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTg > 1:1742803/1‑93 (MQ=255)
cGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTa > 2:4517694/1‑93 (MQ=255)
cTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTaaa < 1:3262032/93‑1 (MQ=255)
tAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTaaaa > 1:4107420/1‑93 (MQ=255)
aaCCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTaaaaa > 2:4478595/1‑93 (MQ=255)
aCCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAAt > 1:3782938/1‑93 (MQ=255)
cagGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGAc < 2:422675/93‑1 (MQ=255)
agGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACt > 1:3741810/1‑93 (MQ=255)
gggCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTc < 1:1753398/93‑1 (MQ=255)
gggCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTc > 2:3081044/1‑93 (MQ=255)
gCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaa > 2:701946/1‑93 (MQ=255)
cAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaca > 1:3603141/1‑91 (MQ=255)
cAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaaa < 2:282680/93‑1 (MQ=255)
gCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaaaaa > 1:2436886/1‑93 (MQ=255)
gCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaaaaa > 1:1954090/1‑93 (MQ=255)
gCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaaaaa > 2:574690/1‑93 (MQ=255)
gCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCaaaaa > 1:488918/1‑93 (MQ=255)
aTCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAccc > 2:2970521/1‑93 (MQ=255)
aTCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAccc < 2:540541/93‑1 (MQ=255)
aTCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAAccc < 2:2035811/93‑1 (MQ=255)
tcccaACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCt < 1:3956801/90‑1 (MQ=255)
tCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCt < 2:2838460/93‑1 (MQ=255)
tCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCt < 1:4140611/93‑1 (MQ=255)
tCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCt < 2:1215009/93‑1 (MQ=255)
cacaACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCtt < 2:2350674/93‑1 (MQ=255)
cacaACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCtt < 2:3231269/93‑1 (MQ=255)
acaACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCttt < 2:2457045/93‑1 (MQ=255)
acaACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCttt < 2:2059586/93‑1 (MQ=255)
aCGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAATATGTGGCTCAAAAACACTTTGcc > 2:2589571/1‑93 (MQ=255)
cGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCg > 2:2484136/1‑93 (MQ=255)
aGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAATAATGTGACTCAAAAACCCTTTGCCGGa > 1:4197984/1‑93 (MQ=255)
aGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGa < 2:1534659/93‑1 (MQ=255)
aGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGa < 2:3841040/93‑1 (MQ=255)
cgcgGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATg < 2:3668178/93‑1 (MQ=255)
tCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGcc > 2:3179062/1‑93 (MQ=255)
tCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGcc > 2:472333/1‑93 (MQ=255)
tCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGcc > 1:3127022/1‑93 (MQ=255)
ccAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGccc > 2:4255599/1‑93 (MQ=255)
cAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCa > 1:451548/1‑93 (MQ=255)
cAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCa > 2:3271117/1‑93 (MQ=255)
cAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCa < 1:975258/93‑1 (MQ=255)
aGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAg > 2:438792/1‑93 (MQ=255)
tAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCa < 2:1986288/93‑1 (MQ=255)
tAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCa < 1:2972107/93‑1 (MQ=255)
tAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCa < 2:3376782/93‑1 (MQ=255)
aaGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCAt > 1:1191217/1‑93 (MQ=255)
aaGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTAAAAAACCCTTTGCCGGATGGCGGCCCAGCAt < 1:2678966/93‑1 (MQ=255)
aGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATc < 1:1533491/93‑1 (MQ=255)
aGCAGTAAAATCCCCGGCAATCGCCTCACCCGGCACTCCCTGGCTGCTAAAAATGTGACTCAAAAACCCNTTGCCGGATGGCGGCCCAGCATc > 1:2225727/1‑93 (MQ=255)
gCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCt > 2:1233274/1‑93 (MQ=255)
gCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCt > 1:3391091/1‑93 (MQ=255)
cAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAATGTGACTCAAAACCCCTTTGCCGGATGGCGGCCCAGCATCTg < 2:2909172/93‑1 (MQ=255)
cAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTg > 1:1124485/1‑93 (MQ=255)
aGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGt < 1:1160430/93‑1 (MQ=255)
gTAAAATCCCCGGCAATCGCCTCCCCGGTCACTCCCTTTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGtt < 2:1430042/93‑1 (MQ=255)
gTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGtt < 1:3030366/93‑1 (MQ=255)
gTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGtt < 2:1307253/93‑1 (MQ=255)
aTCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAcat < 2:3462952/93‑1 (MQ=255)
aTCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAcat > 2:2859158/1‑93 (MQ=255)
tCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAcatc < 1:1349398/93‑1 (MQ=255)
accccGGCAACCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTAcatc < 1:802588/92‑1 (MQ=255)
cccGGCAATCGCCTCACACGTTACTCCCTGTCTGCTAAAAAAGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTTTTTAcatcat < 2:3057952/93‑1 (MQ=255)
ccGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCAtt > 1:3862462/1‑93 (MQ=255)
ccGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCAtt < 1:227376/93‑1 (MQ=255)
cGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTa > 1:1122947/1‑93 (MQ=255)
cGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTa < 2:774965/93‑1 (MQ=255)
cGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTa > 1:3003540/1‑93 (MQ=255)
ggCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTac < 1:3208543/93‑1 (MQ=255)
cAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTacga < 1:4337516/93‑1 (MQ=255)
aaTCGCCTCACCCTTCACTCCCTTTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTacgac > 2:1639684/1‑93 (MQ=255)
aaTCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTacgac < 1:1685447/93‑1 (MQ=255)
aaTCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTacgac > 1:2079057/1‑93 (MQ=255)
aaTCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTacgac > 1:4240112/1‑93 (MQ=255)
aTCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTacgacg > 2:1849819/1‑93 (MQ=255)
tCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGt > 2:4593464/1‑93 (MQ=255)
cGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTc < 2:2182938/93‑1 (MQ=255)
gCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCa < 1:672431/93‑1 (MQ=255)
gCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCa < 1:2818161/93‑1 (MQ=255)
cTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCaaa > 1:4423247/1‑93 (MQ=255)
tCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAc > 2:2336677/1‑93 (MQ=255)
tCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAc < 2:4035550/93‑1 (MQ=255)
cACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGACCAGCATCTGTTTACATCATTACGACGTCAAACt > 2:1180390/1‑93 (MQ=255)
ccccGTCCCTCCCTGTCGGCTAAAAATGTGCCTCAAAACCCCTTTGCCGAATGGCGCCCCAGCATCTGTTTACATCATTACGACGTCAAACTg < 1:3396828/92‑1 (MQ=255)
aCCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTg > 2:4185461/1‑93 (MQ=255)
aCCCGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTg > 1:4359239/1‑93 (MQ=255)
cccGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGc < 2:3895935/93‑1 (MQ=255)
ccGTCACTCCCTGTCTGCTAAAAATGTGACTCAAAAGCCCTTTGCCGGATGGCGACCCAGCATCTGTTTACATCATTACGACGTCAAACTGCt < 1:2021441/93‑1 (MQ=255)
tCACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCt < 2:1236650/93‑1 (MQ=255)
cACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTg > 1:3566451/1‑93 (MQ=255)
cACTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTg < 2:1566050/93‑1 (MQ=255)
ccTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTgg < 1:3347311/92‑1 (MQ=255)
cTCCCTGTCTGCTAAAAATGTGACTCAAAACCCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGt < 1:2694147/93‑1 (MQ=255)
cTCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGt < 2:1604102/93‑1 (MQ=255)
tCCCTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGtt > 1:4405559/1‑93 (MQ=255)
cTTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTtat < 1:4019733/93‑1 (MQ=255)
|
CGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAATGTGACTCAAAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTAT > NC_000913/3393816‑3393997
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATAG > NC_000913/3393813‑3393999
|
ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCC > SRR4302544.2763582/1‑94 (MQ=60)
ttccCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCCCTCCCT < SRR4302544.2860335/90‑1 (MQ=60)
TACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCT < SRR4302544.108733/94‑1 (MQ=60)
TACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCT < SRR4302544.2353902/94‑1 (MQ=60)
AACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCT < SRR4302544.2860336/94‑1 (MQ=60)
CAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCT > SRR4302544.1182946/1‑94 (MQ=60)
CAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCT < SRR4302544.4462078/94‑1 (MQ=60)
CAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCT > SRR4302544.1256933/1‑94 (MQ=60)
CAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGCAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCT > SRR4302544.773261/1‑94 (MQ=60)
AGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTG < SRR4302544.1849821/94‑1 (MQ=60)
AGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTG > SRR4302544.1759867/1‑94 (MQ=60)
GGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGC < SRR4302544.680501/94‑1 (MQ=60)
GCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAA > SRR4302544.4219881/1‑94 (MQ=60)
CTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAA < SRR4302544.3293185/94‑1 (MQ=60)
CTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAA > SRR4302544.4148259/1‑94 (MQ=60)
AACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAAT > SRR4302544.3820403/1‑94 (MQ=60)
ACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATG < SRR4302544.313440/94‑1 (MQ=60)
GCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGAC > SRR4302544.2291351/1‑94 (MQ=60)
CAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACT > SRR4302544.3778989/1‑94 (MQ=60)
GGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA < SRR4302544.1770560/94‑1 (MQ=60)
GCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑CA > SRR4302544.3638044/1‑94 (MQ=60)
CAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAA > SRR4302544.2077181/1‑94 (MQ=60)
AGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAA > SRR4302544.1973044/1‑94 (MQ=60)
AGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAA > SRR4302544.2460118/1‑94 (MQ=60)
AGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAA > SRR4302544.493710/1‑94 (MQ=60)
CGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCTCCCAACACTCCCTGTCTGCTAAACATGTGACTCACAAAAC > SRR4302544.991577/1‑94 (MQ=60)
GATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCT > SRR4302544.17654/1‑94 (MQ=60)
TCCCAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTT < SRR4302544.3996144/94‑1 (MQ=60)
TCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTT < SRR4302544.4181602/94‑1 (MQ=60)
TCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTT < SRR4302544.3455000/94‑1 (MQ=60)
CACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTT < SRR4302544.2522214/94‑1 (MQ=60)
CAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGC > SRR4302544.3706445/1‑94 (MQ=60)
CGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGG > SRR4302544.4154358/1‑94 (MQ=60)
GAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAATAATGTGACTCA‑AAAACCCTTTGCCGGA > SRR4302544.4239780/1‑94 (MQ=60)
AGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGAT < SRR4302544.949788/94‑1 (MQ=60)
GCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGC < SRR4302544.2302686/94‑1 (MQ=60)
CGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCG < SRR4302544.788596/94‑1 (MQ=60)
CTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCC > SRR4302544.3156740/1‑94 (MQ=60)
TCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCC > SRR4302544.2921927/1‑94 (MQ=60)
CCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCA > SRR4302544.456025/1‑94 (MQ=60)
CCAGTAAGCAGTAAAACCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCA < SRR4302544.3217744/94‑1 (MQ=60)
CAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAG < SRR4302544.984825/94‑1 (MQ=60)
CAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAG > SRR4302544.4603537/1‑94 (MQ=60)
TAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCAT > SRR4302544.1203037/1‑94 (MQ=60)
TAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCAT < SRR4302544.3000606/94‑1 (MQ=60)
AAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTAA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATC < SRR4302544.2704637/94‑1 (MQ=60)
AAGCAGTAAAATCCCCGGCAATCGCCTCACCCGGCACTCCCTGGCTGCTAAAAATGTGACTCA‑AAAACCCNTTGCCGGATGGCGGCCCAGCATC > SRR4302544.2246665/1‑94 (MQ=60)
AGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCT > SRR4302544.3423503/1‑94 (MQ=60)
AGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCT < SRR4302544.1548722/94‑1 (MQ=60)
AGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCT > SRR4302544.3423502/1‑94 (MQ=60)
AGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCT < SRR4302544.1948493/94‑1 (MQ=60)
GCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTG > SRR4302544.1135689/1‑94 (MQ=60)
GCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTG < SRR4302544.2711528/94‑1 (MQ=60)
AGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCTGCCCAGCATCTGTT > SRR4302544.531489/1‑94 (MQ=60)
AGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTT > SRR4302544.1159808/1‑94 (MQ=60)
AGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTT < SRR4302544.1171988/94‑1 (MQ=60)
GTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTT < SRR4302544.2804397/94‑1 (MQ=60)
GTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTT < SRR4302544.3059400/94‑1 (MQ=60)
AATCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACAT > SRR4302544.41355/1‑94 (MQ=60)
TCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCA < SRR4302544.1362770/94‑1 (MQ=60)
TCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCA > SRR4302544.3032104/1‑94 (MQ=60)
TCCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCA < SRR4302544.2159996/94‑1 (MQ=60)
ACCCCGGCAACCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCA < SRR4302544.810397/94‑1 (MQ=60)
CCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCAT > SRR4302544.3874080/1‑94 (MQ=60)
CCCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCAT > SRR4302544.3312479/1‑94 (MQ=60)
CCCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATT > SRR4302544.3900807/1‑94 (MQ=60)
CCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTA > SRR4302544.1134144/1‑94 (MQ=60)
CCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTA < SRR4302544.229736/94‑1 (MQ=60)
CCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTA < SRR4302544.3425727/94‑1 (MQ=60)
CCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTA < SRR4302544.3272675/94‑1 (MQ=60)
CCGGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTA > SRR4302544.3032331/1‑94 (MQ=60)
GGCAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACG < SRR4302544.3239145/94‑1 (MQ=60)
CAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGAC < SRR4302544.424540/94‑1 (MQ=60)
CAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGAC < SRR4302544.4381657/94‑1 (MQ=60)
CAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGAC > SRR4302544.4283327/1‑94 (MQ=60)
CAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGAC < SRR4302544.1841486/94‑1 (MQ=60)
CAATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGAC > SRR4302544.2099042/1‑94 (MQ=60)
AATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACG < SRR4302544.1702058/94‑1 (MQ=60)
AATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACG > SRR4302544.1435196/1‑94 (MQ=60)
ATCGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGT > SRR4302544.1688029/1‑94 (MQ=60)
CGCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCA > SRR4302544.3925089/1‑94 (MQ=60)
GCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAA < SRR4302544.679073/94‑1 (MQ=60)
GCCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAA < SRR4302544.2845372/94‑1 (MQ=60)
CCTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAA > SRR4302544.4467872/1‑94 (MQ=60)
CTCACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAAC > SRR4302544.4383750/1‑94 (MQ=60)
CACCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTG > SRR4302544.4403481/1‑94 (MQ=60)
CCCCGTCCCTCCCTGTCGGCTAAAAATGTGCCTCA‑AAACCCCTTTGCCGAATGGCGCCCCAGCATCTGTTTACATCATTACGACGTCAAACTGC < SRR4302544.3429313/94‑1 (MQ=60)
CCCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCT < SRR4302544.4476766/94‑1 (MQ=60)
CCGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAGCCCTTTGCCGGATGGCGACCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTC < SRR4302544.2041056/94‑1 (MQ=60)
CGTCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCC > SRR4302544.1758368/1‑94 (MQ=60)
TCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTG > SRR4302544.3600646/1‑94 (MQ=60)
TCACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTG < SRR4302544.3613481/94‑1 (MQ=60)
CCTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGT < SRR4302544.3379246/94‑1 (MQ=60)
ACTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGT > SRR4302544.4295546/1‑94 (MQ=60)
CTCCCTGTCTGCTAAAAATGTGACTCA‑AAACCCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTT < SRR4302544.2720006/94‑1 (MQ=60)
CTCCCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTT > SRR4302544.4450057/1‑94 (MQ=60)
CTTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATA < SRR4302544.4059735/94‑1 (MQ=60)
CTTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATA < SRR4302544.4059734/94‑1 (MQ=60)
CCTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATA > SRR4302544.372238/1‑94 (MQ=60)
CTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATAG < SRR4302544.831662/94‑1 (MQ=60)
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ATACGCAGGCCGCTAACCAGCAGGGCAGCGATCACAACGAGCGCGGCTCCAGTAAGCAGTAAAATCCCCGGCAATCGCCTCACCCGTCACTCCTTGTCTGCTAAAAATGTGACTCA‑AAAACCCTTTGCCGGATGGCGGCCCAGCATCTGTTTACATCATTACGACGTCAAACTGCTCCTGGTTATAG > NC_000913/3393813‑3393999
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
