Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1357 179.3 9500450 96.1% 9129932 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,434,055 A→G P404P (CCA→CCG)  sun → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,434,0550AG100.0% 564.0 / NA 172P404P (CCA→CCG) sunhypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (97/75);  total (97/75)

Only 100 of 181 total aligned reads displayed.

CTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCAGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGG  >  NC_000913/3433965‑3434144
                                                                                          |                                                                                         
cTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCgga                                                                                         <  2:3906440/93‑1 (MQ=255)
 tGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCggag                                                                                        >  1:2269282/1‑93 (MQ=255)
   ttCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCa                                                                                      >  1:3900343/1‑93 (MQ=255)
   ttCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCa                                                                                      >  1:4660213/1‑93 (MQ=255)
   ttCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCa                                                                                      >  2:2271068/1‑93 (MQ=255)
     cGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAAc                                                                                    >  2:4305228/1‑93 (MQ=255)
        ggtTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCgg                                                                                 <  1:1186903/92‑1 (MQ=255)
         gtTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCggg                                                                                >  1:1005472/1‑93 (MQ=255)
         gtTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCggg                                                                                >  2:664493/1‑93 (MQ=255)
             ccGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTaaa                                                                            <  1:4019567/93‑1 (MQ=255)
                gAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACaa                                                                         >  2:1736177/1‑93 (MQ=255)
                gAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACaa                                                                         >  1:582502/1‑93 (MQ=255)
                  agagAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACaaaa                                                                       <  1:3056664/93‑1 (MQ=255)
                   gagaATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAAt                                                                      >  1:946730/1‑93 (MQ=255)
                    agaATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATc                                                                     <  1:1217012/93‑1 (MQ=255)
                     gaATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCt                                                                    >  1:4460283/1‑93 (MQ=255)
                       aTAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTAc                                                                  >  2:606423/1‑93 (MQ=255)
                       aTAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTAc                                                                  >  2:357520/1‑93 (MQ=255)
                       aTAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTAc                                                                  <  2:3376363/93‑1 (MQ=255)
                        tAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTAcc                                                                 >  1:107124/1‑93 (MQ=255)
                         aGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCt                                                                >  2:2233197/1‑93 (MQ=255)
                         aGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCt                                                                <  1:2791591/93‑1 (MQ=255)
                          gCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTg                                                               <  1:1021727/93‑1 (MQ=255)
                          gCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTg                                                               >  1:2616921/1‑93 (MQ=255)
                           ccTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTgg                                                              >  2:182951/1‑93 (MQ=255)
                           ccTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTgg                                                              <  1:1717384/93‑1 (MQ=255)
                            cTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGt                                                             <  2:4232728/93‑1 (MQ=255)
                              gCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGc                                                           >  1:368028/1‑93 (MQ=255)
                              gCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGc                                                           >  1:2459034/1‑93 (MQ=255)
                                aGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCg                                                         >  2:3354484/1‑93 (MQ=255)
                                aGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCg                                                         >  2:3518131/1‑93 (MQ=255)
                                  aTTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGaa                                                       <  2:2871538/93‑1 (MQ=255)
                                  aTTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGaa                                                       >  2:803041/1‑93 (MQ=255)
                                   ttAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAag                                                      <  1:1626452/93‑1 (MQ=255)
                                     aaaGCCTTTTCCCAACATACCGCTTGTGCCGAGCGTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAagag                                                    <  2:1479798/93‑1 (MQ=255)
                                      aaGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAgg                                                   >  2:1184610/1‑93 (MQ=255)
                                      aaGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAgg                                                   >  1:862371/1‑93 (MQ=255)
                                       aGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAggg                                                  >  1:2680416/1‑93 (MQ=255)
                                        gCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGc                                                 >  1:4687557/1‑93 (MQ=255)
                                        gCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGc                                                 >  2:837852/1‑93 (MQ=255)
                                         ccTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCg                                                <  2:748280/93‑1 (MQ=255)
                                         ccTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCg                                                >  2:2388420/1‑93 (MQ=255)
                                          cTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCgc                                               >  2:4699933/1‑92 (MQ=255)
                                          cTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGa                                               >  1:128092/1‑93 (MQ=255)
                                          cTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGa                                               >  2:2687630/1‑93 (MQ=255)
                                          cTTTTGGCCACGTACCGCTGAAGCCGCATTTTAAGAAACAGGACCACCAGAGCCACCGGGTACACAAAACCTGCATGGTGCCGAAGAGGGCgc                                               >  2:1175659/1‑92 (MQ=255)
                                           tttttGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGAc                                              <  1:1985459/93‑1 (MQ=255)
                                            ttttGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACg                                             <  2:3479473/93‑1 (MQ=255)
                                            ttttGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACg                                             >  1:3197994/1‑93 (MQ=255)
                                               tGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGct                                          <  2:3553063/93‑1 (MQ=255)
                                                gCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAATACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGctt                                         >  2:90828/1‑93 (MQ=255)
                                                gCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGctt                                         >  1:159319/1‑93 (MQ=255)
                                                gCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGctt                                         >  1:3613199/1‑93 (MQ=255)
                                                  aaCGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGcttct                                       >  2:2046769/1‑93 (MQ=255)
                                                  aaCGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGcttct                                       >  1:393709/1‑93 (MQ=255)
                                                  aaCGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGcttct                                       <  1:783541/93‑1 (MQ=255)
                                                     gTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCtttt                                    >  2:2508447/1‑93 (MQ=255)
                                                     gTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCtttt                                    <  2:1985901/93‑1 (MQ=255)
                                                      tACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTa                                   >  1:3183751/1‑93 (MQ=255)
                                                      gaCCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTa                                   <  1:698847/92‑1 (MQ=255)
                                                       aCCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTAc                                  >  2:310108/1‑93 (MQ=255)
                                                       aCCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTAc                                  <  2:2086246/93‑1 (MQ=255)
                                                        ccGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACg                                 >  2:873188/1‑93 (MQ=255)
                                                        ccGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACg                                 >  1:4309143/1‑93 (MQ=255)
                                                           cTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGCGCCGAAGAGGGCGACGGCTTCTTTTACgcta                              <  1:1959730/93‑1 (MQ=255)
                                                            tGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgctaa                             >  1:130979/1‑93 (MQ=255)
                                                             gATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgctaag                            >  1:3725333/1‑93 (MQ=255)
                                                             gATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgctaag                            >  2:3750457/1‑93 (MQ=255)
                                                              aTGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgctaagc                           <  1:3658658/93‑1 (MQ=255)
                                                               tGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgctaagct                          >  1:19222/1‑93 (MQ=255)
                                                               tGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgctaagct                          >  2:4143912/1‑93 (MQ=255)
                                                                gCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgctaagcta                         <  2:4650481/93‑1 (MQ=255)
                                                                 ccGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgctaagctaa                        <  1:2555684/93‑1 (MQ=255)
                                                                 ccGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgctaagctaa                        <  1:2100544/93‑1 (MQ=255)
                                                                   gAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATc                      <  1:3432853/93‑1 (MQ=255)
                                                                   gAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATc                      <  1:760409/93‑1 (MQ=255)
                                                                   gAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATc                      >  1:2143983/1‑93 (MQ=255)
                                                                    aaCTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCa                     >  2:3639655/1‑93 (MQ=255)
                                                                    aaCTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCa                     <  2:3422612/93‑1 (MQ=255)
                                                                    aaCTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCa                     >  1:640613/1‑93 (MQ=255)
                                                                     aCTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCaa                    >  2:3930483/1‑93 (MQ=255)
                                                                       tttGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCaaaa                  >  2:1267151/1‑93 (MQ=255)
                                                                       tttGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCaaaa                  >  2:113277/1‑93 (MQ=255)
                                                                         tGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAg                <  2:2399288/93‑1 (MQ=255)
                                                                          gCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGt               <  2:2944114/93‑1 (MQ=255)
                                                                            gAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGtga             <  2:3795253/93‑1 (MQ=255)
                                                                             aaaCAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGtgat            >  1:2053593/1‑93 (MQ=255)
                                                                             aaaCAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGtgat            >  1:149553/1‑93 (MQ=255)
                                                                               aCAGAAACACCAGAGCAACCGGGTAAACAAAATCTGCCTGGTGCCGAAGAGGGCGACGGCTTCTTTGACGCTAAGCTAATCAAAAAGtgatga          <  2:4274237/93‑1 (MQ=255)
                                                                                cAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATgag         <  1:234278/93‑1 (MQ=255)
                                                                                  ggAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGAt       >  2:1813641/1‑93 (MQ=255)
                                                                                  ggAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGAt       >  1:2967278/1‑93 (MQ=255)
                                                                                   gAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATa      <  2:3604401/93‑1 (MQ=255)
                                                                                   gAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATa      <  1:507298/93‑1 (MQ=255)
                                                                                    aaCACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGAGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATaa     <  1:3733097/93‑1 (MQ=255)
                                                                                     acacCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAAc    <  2:3278860/93‑1 (MQ=255)
                                                                                     acacCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAAc    <  1:523188/93‑1 (MQ=255)
                                                                                      cacCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACg   >  2:3815478/1‑93 (MQ=255)
                                                                                      cacCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACg   <  1:353143/93‑1 (MQ=255)
                                                                                       acCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACgg  >  2:3034861/1‑93 (MQ=255)
                                                                                          |                                                                                         
CTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCAGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGG  >  NC_000913/3433965‑3434144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CACCTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCAGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGGGT  >  NC_000913/3433962‑3434146
                                                                                             |                                                                                           
CACCTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCG                                                                                             >  SRR4302544.2200130/1‑94 (MQ=60)
CACCTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCG                                                                                             <  SRR4302544.1044988/94‑1 (MQ=60)
CACCTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCG                                                                                             >  SRR4302544.4587264/1‑94 (MQ=60)
 ACCTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGG                                                                                            >  SRR4302544.4752171/1‑94 (MQ=60)
  CCTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGA                                                                                           <  SRR4302544.673018/94‑1 (MQ=60)
   CTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAG                                                                                          >  SRR4302544.2290633/1‑94 (MQ=60)
   CTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAG                                                                                          >  SRR4302544.2071444/1‑94 (MQ=60)
    TGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGC                                                                                         >  SRR4302544.1033853/1‑94 (MQ=60)
    TGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGC                                                                                         <  SRR4302544.2210527/94‑1 (MQ=60)
    TGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGC                                                                                         >  SRR4302544.2795040/1‑94 (MQ=60)
     GTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCA                                                                                        >  SRR4302544.3939086/1‑94 (MQ=60)
     GTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCA                                                                                        >  SRR4302544.3939087/1‑94 (MQ=60)
     GTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCA                                                                                        >  SRR4302544.4706313/1‑94 (MQ=60)
       TCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAAC                                                                                      <  SRR4302544.4406970/94‑1 (MQ=60)
           TGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGG                                                                                  >  SRR4302544.1015463/1‑94 (MQ=60)
           GGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGG                                                                                  <  SRR4302544.1198694/94‑1 (MQ=60)
                CCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAAC                                                                             <  SRR4302544.4059566/94‑1 (MQ=60)
                 CGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACA                                                                            >  SRR4302544.3719773/1‑94 (MQ=60)
                  GGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAA                                                                           >  SRR4302544.588216/1‑94 (MQ=60)
                     AGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAAT                                                                        <  SRR4302544.3085845/94‑1 (MQ=60)
                     AGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAAT                                                                        >  SRR4302544.956050/1‑94 (MQ=60)
                       AGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCT                                                                      >  SRR4302544.4505181/1‑94 (MQ=60)
                       AGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCT                                                                      <  SRR4302544.1229054/94‑1 (MQ=60)
                       AGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCT                                                                      <  SRR4302544.209976/94‑1 (MQ=60)
                       AGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCT                                                                      <  SRR4302544.2574182/94‑1 (MQ=60)
                         AATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTAC                                                                    >  SRR4302544.577169/1‑94 (MQ=60)
                          ATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACC                                                                   >  SRR4302544.108103/1‑94 (MQ=60)
                           TAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCT                                                                  >  SRR4302544.4351877/1‑94 (MQ=60)
                            AGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTG                                                                 >  SRR4302544.2641927/1‑94 (MQ=60)
                            AGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTG                                                                 >  SRR4302544.2642035/1‑94 (MQ=60)
                            AGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTG                                                                 <  SRR4302544.2818469/94‑1 (MQ=60)
                             GCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGG                                                                <  SRR4302544.1031930/94‑1 (MQ=60)
                              CCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGT                                                               <  SRR4302544.1734269/94‑1 (MQ=60)
                              CCTGCAGATGAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGT                                                               <  SRR4302544.615693/94‑1 (MQ=60)
                                TGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGC                                                             >  SRR4302544.371789/1‑94 (MQ=60)
                                TGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGC                                                             >  SRR4302544.2482501/1‑94 (MQ=60)
                                  CAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCG                                                           >  SRR4302544.1731506/1‑94 (MQ=60)
                                  CAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCG                                                           >  SRR4302544.4744324/1‑94 (MQ=60)
                                   AGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGA                                                          <  SRR4302544.2852773/94‑1 (MQ=60)
                                   AGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCCACCTGGTGCCGA                                                          >  SRR4302544.1249954/1‑94 (MQ=60)
                                   AGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCCAACTTTGCGAAACAGGAACACCGGAGCAACCGGGgaaaccaaagataccggatgcgta                                                          >  SRR4302544.1249953/1‑70 (MQ=60)
                                     ATTAAAGCCTTTTTTCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAG                                                        <  SRR4302544.1183777/94‑1 (MQ=60)
                                      TTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGA                                                       <  SRR4302544.1642476/94‑1 (MQ=60)
                                        AAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGG                                                     >  SRR4302544.1547522/1‑94 (MQ=60)
                                        AAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGG                                                     >  SRR4302544.870905/1‑94 (MQ=60)
                                         AAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGG                                                    >  SRR4302544.2706101/1‑94 (MQ=60)
                                          AGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGC                                                   <  SRR4302544.71630/94‑1 (MQ=60)
                                          AGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGC                                                   >  SRR4302544.4733885/1‑94 (MQ=60)
                                           GCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCG                                                  <  SRR4302544.3766239/94‑1 (MQ=60)
                                            CCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGA                                                 >  SRR4302544.129272/1‑94 (MQ=60)
                                              TTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACG                                               <  SRR4302544.2004737/94‑1 (MQ=60)
                                              TTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACG                                               >  SRR4302544.3228480/1‑94 (MQ=60)
                                                  TGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTT                                           >  SRR4302544.160877/1‑94 (MQ=60)
                                                  TGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTT                                           >  SRR4302544.3648651/1‑94 (MQ=60)
                                                    CAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCT                                         >  SRR4302544.397700/1‑94 (MQ=60)
                                                     AACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTT                                        <  SRR4302544.791128/94‑1 (MQ=60)
                                                      ACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTT                                       <  SRR4302544.1468472/94‑1 (MQ=60)
                                                      ACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTT                                       >  SRR4302544.3798184/1‑94 (MQ=60)
                                                        GTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTA                                     >  SRR4302544.3214051/1‑94 (MQ=60)
                                                         GACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTAC                                    <  SRR4302544.705805/94‑1 (MQ=60)
                                                          ACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACG                                   >  SRR4302544.4353070/1‑94 (MQ=60)
                                                           CCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGC                                  >  SRR4302544.2439464/1‑94 (MQ=60)
                                                            CGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCT                                 <  SRR4302544.3064618/94‑1 (MQ=60)
                                                            CGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCT                                 >  SRR4302544.3108666/1‑94 (MQ=60)
                                                              CTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAA                               <  SRR4302544.1978745/94‑1 (MQ=60)
                                                              CTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAA                               >  SRR4302544.132183/1‑94 (MQ=60)
                                                              CTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAA                               >  SRR4302544.1629834/1‑94 (MQ=60)
                                                              CTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGCGCCGAAGAGGGCGACGGCTTCTTTTACGCTAA                               <  SRR4302544.1978747/94‑1 (MQ=60)
                                                               TGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAG                              >  SRR4302544.931403/1‑94 (MQ=60)
                                                               TGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAG                              >  SRR4302544.3762383/1‑94 (MQ=60)
                                                                 ATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCT                            <  SRR4302544.3695160/94‑1 (MQ=60)
                                                                 ATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCT                            >  SRR4302544.1992429/1‑94 (MQ=60)
                                                                 ATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCT                            >  SRR4302544.19414/1‑94 (MQ=60)
                                                                    CCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAAT                         <  SRR4302544.2580223/94‑1 (MQ=60)
                                                                    CCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAAT                         <  SRR4302544.2120756/94‑1 (MQ=60)
                                                                    CCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAAT                         <  SRR4302544.3268703/94‑1 (MQ=60)
                                                                     CGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATC                        >  SRR4302544.2358750/1‑94 (MQ=60)
                                                                     CGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATC                        >  SRR4302544.2164430/1‑94 (MQ=60)
                                                                      GAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCA                       <  SRR4302544.3465670/94‑1 (MQ=60)
                                                                      GAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCA                       <  SRR4302544.767824/94‑1 (MQ=60)
                                                                      GAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCA                       >  SRR4302544.646929/1‑94 (MQ=60)
                                                                       AACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAA                      <  SRR4302544.1208399/94‑1 (MQ=60)
                                                                        ACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAA                     <  SRR4302544.3670940/94‑1 (MQ=60)
                                                                               GAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGAT              >  SRR4302544.150984/1‑94 (MQ=60)
                                                                               GAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGAT              >  SRR4302544.2073358/1‑94 (MQ=60)
                                                                                  ACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAG           <  SRR4302544.801710/94‑1 (MQ=60)
                                                                                  ACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGGGATGAG           >  SRR4302544.3516332/1‑94 (MQ=60)
                                                                                   CAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGA          <  SRR4302544.3614325/94‑1 (MQ=60)
                                                                                   CAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGA          <  SRR4302544.236716/94‑1 (MQ=60)
                                                                                   CAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGA          >  SRR4302544.4729423/1‑94 (MQ=60)
                                                                                    AGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGAT         >  SRR4302544.690549/1‑94 (MQ=60)
                                                                                    AGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGAT         >  SRR4302544.2995743/1‑94 (MQ=60)
                                                                                      GAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAA       <  SRR4302544.512287/94‑1 (MQ=60)
                                                                                       AACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAAC      <  SRR4302544.4511121/94‑1 (MQ=60)
                                                                                       AACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGAGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAAC      <  SRR4302544.3770213/94‑1 (MQ=60)
                                                                                        ACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACG     <  SRR4302544.528364/94‑1 (MQ=60)
                                                                                         CACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGG    <  SRR4302544.356758/94‑1 (MQ=60)
                                                                                          ACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGGG   >  SRR4302544.4164333/1‑94 (MQ=60)
                                                                                           CCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGGGT  <  SRR4302544.4307242/94‑1 (MQ=60)
                                                                                             |                                                                                           
CACCTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCAGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGGGT  >  NC_000913/3433962‑3434146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑