Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,434,055	A→G	P404P (CCA→CCG)	sun →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,434,055	0	A	G	100.0%	768.2 / NA	234	P404P (CCA→CCG)	sun	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (126/108); total (126/108)

Only 100 of 247 total aligned reads displayed.

CTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCAGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGG  >  NC_000913/3433965‑3434144

cTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCgga                                                                                         >  2:3326361/1‑93 (MQ=255)

cTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCgga                                                                                         >  1:4852523/1‑93 (MQ=255)

 tGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCggag                                                                                        >  1:463362/1‑93 (MQ=255)

 tGTTCGGTGTTACCGCAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCggag                                                                                        <  2:3281026/93‑1 (MQ=255)

     cGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAAc                                                                                    <  2:3879789/93‑1 (MQ=255)

     cGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAAc                                                                                    <  1:1141748/93‑1 (MQ=255)

     cGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAAc                                                                                    >  2:2813162/1‑93 (MQ=255)

     cGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAAc                                                                                    <  1:2157908/93‑1 (MQ=255)

       gtgtTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCg                                                                                  >  2:1988888/1‑93 (MQ=255)

        tgtTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCgg                                                                                 <  2:3980654/93‑1 (MQ=255)

         gtTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCggg                                                                                <  2:881441/93‑1 (MQ=255)

          ttACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGt                                                                               <  1:4877274/93‑1 (MQ=255)

           tACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTa                                                                              <  2:4848397/93‑1 (MQ=255)

           tACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTAACGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTa                                                                              >  1:5024338/1‑93 (MQ=255)

             ccGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTaaa                                                                            <  2:2406490/93‑1 (MQ=255)

              cGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAAc                                                                           >  1:1286508/1‑93 (MQ=255)

              cGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAAc                                                                           <  1:3766477/93‑1 (MQ=255)

               ggAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACa                                                                          >  2:1491332/1‑93 (MQ=255)

                gAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACaa                                                                         >  2:6226094/1‑93 (MQ=255)

                gAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACaa                                                                         >  2:2184957/1‑93 (MQ=255)

                 aaGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACaaa                                                                        >  2:1603142/1‑93 (MQ=255)

                 aaGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACaaa                                                                        <  2:1062010/93‑1 (MQ=255)

                   gagaATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAAt                                                                      >  1:5216869/1‑93 (MQ=255)

                    agaATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATc                                                                     >  2:4626428/1‑93 (MQ=255)

                       aTAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTAc                                                                  >  1:1595076/1‑93 (MQ=255)

                       aTAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGAAGACAAAATCTAc                                                                  >  1:5823988/1‑93 (MQ=255)

                        tAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTACACACAATCTAcc                                                                 >  1:5813560/1‑93 (MQ=255)

                        tAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTAcc                                                                 >  2:4771583/1‑93 (MQ=255)

                        tAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTAcc                                                                 <  2:6435875/93‑1 (MQ=255)

                         aGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCt                                                                <  1:5699180/93‑1 (MQ=255)

                         aGCCCGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCt                                                                <  1:3005591/93‑1 (MQ=255)

                          gCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTg                                                               >  1:6648250/1‑93 (MQ=255)

                           ccTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTgg                                                              <  2:2026851/93‑1 (MQ=255)

                            cTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGt                                                             <  2:5362971/93‑1 (MQ=255)

                              gCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGc                                                           <  2:4146143/93‑1 (MQ=255)

                                 gATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGa                                                        >  1:2265719/1‑93 (MQ=255)

                                    tAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAaga                                                     <  1:6673916/93‑1 (MQ=255)

                                    tAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAaga                                                     <  1:1004649/93‑1 (MQ=255)

                                    tAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAAGCTACCTGGTGCCGAaga                                                     <  1:3397922/93‑1 (MQ=255)

                                     aaaGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAagag                                                    >  2:1231488/1‑93 (MQ=255)

                                      aaGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAgg                                                   >  1:6096856/1‑93 (MQ=255)

                                      aaGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAgg                                                   >  2:3627657/1‑93 (MQ=255)

                                      aaGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAgg                                                   >  1:3958068/1‑93 (MQ=255)

                                       aGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAggg                                                  <  2:5480349/93‑1 (MQ=255)

                                       aGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAggg                                                  <  1:209380/93‑1 (MQ=255)

                                        gCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGc                                                 <  1:4560269/93‑1 (MQ=255)

                                        gCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGc                                                 >  2:4304072/1‑93 (MQ=255)

                                           tttttGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGAc                                              >  2:5179325/1‑93 (MQ=255)

                                           tttttGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGAc                                              >  1:28230/1‑93 (MQ=255)

                                             tttGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACgg                                            >  1:2009203/1‑93 (MQ=255)

                                              ttGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGc                                           <  1:639071/93‑1 (MQ=255)

                                               tGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGct                                          <  2:6661522/93‑1 (MQ=255)

                                               tGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGct                                          >  2:5891393/1‑93 (MQ=255)

                                                gCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGctt                                         >  2:4968007/1‑93 (MQ=255)

                                                gCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGctt                                         <  1:3062866/93‑1 (MQ=255)

                                                 cAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGcttc                                        <  1:5197939/93‑1 (MQ=255)

                                                   aCGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGcttctt                                      <  1:5992063/93‑1 (MQ=255)

                                                   aCGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGcttctt                                      >  2:2347855/1‑93 (MQ=255)

                                                   aCGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGcttctt                                      >  2:4159397/1‑93 (MQ=255)

                                                   aCGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGcttctt                                      <  1:6416152/93‑1 (MQ=255)

                                                    cGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCttt                                     <  2:3230303/93‑1 (MQ=255)

                                                     gTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCtttt                                    >  2:2088853/1‑93 (MQ=255)

                                                      tACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTa                                   <  1:2711965/93‑1 (MQ=255)

                                                      tACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTa                                   <  2:144944/93‑1 (MQ=255)

                                                      tACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTa                                   <  2:5576704/93‑1 (MQ=255)

                                                      tACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTa                                   >  2:5134569/1‑93 (MQ=255)

                                                       aCCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTAc                                  >  1:1507781/1‑93 (MQ=255)

                                                       aCCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTAc                                  <  1:1229693/93‑1 (MQ=255)

                                                         cGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgc                                >  1:999826/1‑93 (MQ=255)

                                                          gCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgct                               >  1:4332328/1‑93 (MQ=255)

                                                            tGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgctaa                             <  2:4577962/93‑1 (MQ=255)

                                                             gATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgctaag                            >  2:1821933/1‑93 (MQ=255)

                                                             gATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgctaag                            >  1:3552518/1‑93 (MQ=255)

                                                              aTGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgctaagc                           <  1:3505665/93‑1 (MQ=255)

                                                                 ccGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACgctaagctaa                        <  1:1088814/93‑1 (MQ=255)

                                                                  cGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGTGCGACGGCTTCTTTTACGCTAAGCTAAt                       <  2:6373124/93‑1 (MQ=255)

                                                                  cGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAAt                       >  2:6681932/1‑93 (MQ=255)

                                                                    aaCTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCa                     >  2:763759/1‑93 (MQ=255)

                                                                    aaCTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCa                     >  1:4217389/1‑93 (MQ=255)

                                                                      cTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCaaa                   <  2:1277197/93‑1 (MQ=255)

                                                                      cTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCaaa                   <  2:5194232/93‑1 (MQ=255)

                                                                        ttGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCaaaaa                 >  2:4374321/1‑93 (MQ=255)

                                                                        ttGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCaaaaa                 <  1:6244912/93‑1 (MQ=255)

                                                                            gAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGtga             >  2:6159352/1‑93 (MQ=255)

                                                                             aaaCAGCAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGtgat            <  1:474073/93‑1 (MQ=255)

                                                                               aCAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGtgatga          >  2:1715166/1‑93 (MQ=255)

                                                                               aCAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGtgatga          <  2:4682792/93‑1 (MQ=255)

                                                                               aCAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGtgatga          >  1:2049909/1‑93 (MQ=255)

                                                                               aCAGGAACACCGGAGCAACCGGGTAAACAAAATCTAACTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGtgatga          <  2:3256130/93‑1 (MQ=255)

                                                                                cAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATgag         >  1:5505558/1‑93 (MQ=255)

                                                                                cAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATgag         <  2:5920554/93‑1 (MQ=255)

                                                                                  ggAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGAt       <  1:6265555/93‑1 (MQ=255)

                                                                                  ggAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGAt       >  1:4178040/1‑93 (MQ=255)

                                                                                  ggAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGGGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGAt       >  2:3111927/1‑93 (MQ=255)

                                                                                   gAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATa      >  1:4456841/1‑93 (MQ=255)

                                                                                    aaCACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATaa     <  2:2265215/93‑1 (MQ=255)

                                                                                    aaCACCGGAGCAACCGGGCAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATaa     >  2:1325537/1‑93 (MQ=255)

                                                                                     acacCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAAc    <  2:6005379/93‑1 (MQ=255)

                                                                                     acacCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAAc    <  1:1809602/93‑1 (MQ=255)

                                                                                       acCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACgg  >  1:4307534/1‑93 (MQ=255)

CTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCAGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGG  >  NC_000913/3433965‑3434144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CACCTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCAGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGGGTCG  >  NC_000913/3433962‑3434148

CACCTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCG                                                                                               >  SRR4302536.5658160/1‑94 (MQ=60)

 CCCTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGG                                                                                              <  SRR4302536.1946974/94‑1 (MQ=60)

  CCTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGA                                                                                             >  SRR4302536.4998540/1‑94 (MQ=60)

   CTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAG                                                                                            <  SRR4302536.4266665/94‑1 (MQ=60)

   CTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAG                                                                                            <  SRR4302536.1070239/94‑1 (MQ=60)

   CTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAG                                                                                            >  SRR4302536.475463/1‑94 (MQ=60)

   CTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAG                                                                                            >  SRR4302536.2088698/1‑94 (MQ=60)

       TCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAAC                                                                                        >  SRR4302536.2241877/1‑94 (MQ=60)

        CGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACC                                                                                       <  SRR4302536.1176079/94‑1 (MQ=60)

        CGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACC                                                                                       <  SRR4302536.2222798/94‑1 (MQ=60)

           TGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGG                                                                                    <  SRR4302536.5112308/94‑1 (MQ=60)

             TTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTA                                                                                  <  SRR4302536.5023991/94‑1 (MQ=60)

             TTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTAACGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTA                                                                                  >  SRR4302536.5174936/1‑94 (MQ=60)

              TACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAA                                                                                 >  SRR4302536.4232075/1‑94 (MQ=60)

                CCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAAC                                                                               >  SRR4302536.596231/1‑94 (MQ=60)

                CCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAAC                                                                               >  SRR4302536.1325001/1‑94 (MQ=60)

                 CGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACA                                                                              <  SRR4302536.3878940/94‑1 (MQ=60)

                  GGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAA                                                                             <  SRR4302536.355009/94‑1 (MQ=60)

                    AAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAA                                                                           >  SRR4302536.4960148/1‑94 (MQ=60)

                     AGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAAT                                                                          <  SRR4302536.603/94‑1 (MQ=60)

                     AGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAAT                                                                          <  SRR4302536.645645/94‑1 (MQ=60)

                     AGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAAT                                                                          >  SRR4302536.5372333/1‑94 (MQ=60)

                      GAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATC                                                                         >  SRR4302536.4744178/1‑94 (MQ=60)

                         AATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTAC                                                                      >  SRR4302536.1641684/1‑94 (MQ=60)

                         AATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGAAGACAAAATCTAC                                                                      >  SRR4302536.5997499/1‑94 (MQ=60)

                          ATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTACACACAATCTACC                                                                     >  SRR4302536.5986737/1‑94 (MQ=60)

                          ATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACC                                                                     >  SRR4302536.625617/1‑94 (MQ=60)

                           TAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCT                                                                    >  SRR4302536.365237/1‑94 (MQ=60)

                           TAGCCTGCAGATTAAAGCCTTTTGGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCT                                                                    <  SRR4302536.5776545/94‑1 (MQ=60)

                            AGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTG                                                                   <  SRR4302536.5868641/94‑1 (MQ=60)

                            AGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTG                                                                   >  SRR4302536.6845902/1‑94 (MQ=60)

                            AGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTG                                                                   >  SRR4302536.1489998/1‑94 (MQ=60)

                            AGCCTGCAGATTAAAGCCTGTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTG                                                                   <  SRR4302536.4753993/94‑1 (MQ=60)

                            AGCCCGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTG                                                                   <  SRR4302536.3093959/94‑1 (MQ=60)

                              CCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGT                                                                 >  SRR4302536.2432563/1‑94 (MQ=60)

                                  CAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCG                                                             >  SRR4302536.3432176/1‑94 (MQ=60)

                                   AGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGA                                                            >  SRR4302536.1183120/1‑94 (MQ=60)

                                   AGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGA                                                            >  SRR4302536.2334351/1‑94 (MQ=60)

                                    CATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTTCCTGGTGCCGAA                                                           <  SRR4302536.178120/94‑1 (MQ=60)

                                      TTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGA                                                         >  SRR4302536.138513/1‑94 (MQ=60)

                                       TAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAG                                                        <  SRR4302536.1034296/94‑1 (MQ=60)

                                       TAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAG                                                        <  SRR4302536.5355007/94‑1 (MQ=60)

                                       TAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAG                                                        >  SRR4302536.685853/1‑94 (MQ=60)

                                       TAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAG                                                        <  SRR4302536.6872217/94‑1 (MQ=60)

                                       TAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAG                                                        >  SRR4302536.753332/1‑94 (MQ=60)

                                       TAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAAGCTACCTGGTGCCGAAGAG                                                        <  SRR4302536.3498991/94‑1 (MQ=60)

                                        AAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGG                                                       >  SRR4302536.4075601/1‑94 (MQ=60)

                                        AAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGG                                                       >  SRR4302536.6278647/1‑94 (MQ=60)

                                        AAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGG                                                       >  SRR4302536.4389185/1‑94 (MQ=60)

                                         AAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGG                                                      >  SRR4302536.1126817/1‑94 (MQ=60)

                                          AGCGTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGC                                                     <  SRR4302536.2145617/94‑1 (MQ=60)

                                          AGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGC                                                     >  SRR4302536.3132834/1‑94 (MQ=60)

                                          AGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGC                                                     <  SRR4302536.214920/94‑1 (MQ=60)

                                          AGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGC                                                     >  SRR4302536.4461126/1‑94 (MQ=60)

                                           GCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTTGTGCCGAAGAGGGCG                                                    >  SRR4302536.121735/1‑94 (MQ=60)

                                           GCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCG                                                    <  SRR4302536.4697083/94‑1 (MQ=60)

                                            CCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGA                                                   >  SRR4302536.2184690/1‑94 (MQ=60)

                                            CCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGA                                                   >  SRR4302536.4677365/1‑94 (MQ=60)

                                            CCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGA                                                   >  SRR4302536.4336534/1‑94 (MQ=60)

                                             CTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGAC                                                  >  SRR4302536.897206/1‑94 (MQ=60)

                                             CTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGAC                                                  >  SRR4302536.29008/1‑94 (MQ=60)

                                              TTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACG                                                 <  SRR4302536.361698/94‑1 (MQ=60)

                                              TTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACG                                                 >  SRR4302536.2027552/1‑94 (MQ=60)

                                              TTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACG                                                 <  SRR4302536.4497097/94‑1 (MQ=60)

                                              TTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTAACTGGCGCCGAAGAGGGCGACG                                                 >  SRR4302536.906969/1‑94 (MQ=60)

                                               TTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGG                                                >  SRR4302536.2069671/1‑94 (MQ=60)

                                                 TTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCT                                              <  SRR4302536.2159071/94‑1 (MQ=60)

                                                 TTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCT                                              <  SRR4302536.657933/94‑1 (MQ=60)

                                                  TGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTT                                             >  SRR4302536.6623963/1‑94 (MQ=60)

                                                   GCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTC                                            <  SRR4302536.3152700/94‑1 (MQ=60)

                                                    CAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCT                                           <  SRR4302536.5352904/94‑1 (MQ=60)

                                                     AACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTT                                          >  SRR4302536.1743812/1‑94 (MQ=60)

                                                     AACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTT                                          <  SRR4302536.5901320/94‑1 (MQ=60)

                                                     AACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTT                                          >  SRR4302536.2890989/1‑94 (MQ=60)

                                                      ACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTT                                         <  SRR4302536.6170694/94‑1 (MQ=60)

                                                      ACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTT                                         <  SRR4302536.6607884/94‑1 (MQ=60)

                                                        GTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTA                                       <  SRR4302536.5652061/94‑1 (MQ=60)

                                                         TACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTAC                                      <  SRR4302536.2792861/94‑1 (MQ=60)

                                                         TACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTAC                                      >  SRR4302536.1552213/1‑94 (MQ=60)

                                                          ACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACG                                     >  SRR4302536.2788266/1‑94 (MQ=60)

                                                          ACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACG                                     >  SRR4302536.3852894/1‑94 (MQ=60)

                                                          ACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACG                                     <  SRR4302536.1266620/94‑1 (MQ=60)

                                                          ACCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACG                                     <  SRR4302536.3019107/94‑1 (MQ=60)

                                                           CCGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGC                                    >  SRR4302536.1029330/1‑94 (MQ=60)

                                                            CGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCT                                   >  SRR4302536.3538973/1‑94 (MQ=60)

                                                            CGCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCT                                   >  SRR4302536.4462080/1‑94 (MQ=60)

                                                             GCTGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTA                                  <  SRR4302536.4774922/94‑1 (MQ=60)

                                                               TGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAG                                <  SRR4302536.4519423/94‑1 (MQ=60)

                                                               TGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAG                                >  SRR4302536.3658736/1‑94 (MQ=60)

                                                               TGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAG                                >  SRR4302536.4406937/1‑94 (MQ=60)

                                                               TGATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAG                                >  SRR4302536.5626676/1‑94 (MQ=60)

                                                                 ATGCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCT                              <  SRR4302536.3610290/94‑1 (MQ=60)

                                                                   GCCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAA                            >  SRR4302536.4039857/1‑94 (MQ=60)

                                                                    CCGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAAT                           <  SRR4302536.1121460/94‑1 (MQ=60)

                                                                     CGAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATC                          <  SRR4302536.6510678/94‑1 (MQ=60)

                                                                      GAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCA                         >  SRR4302536.4342833/1‑94 (MQ=60)

                                                                      GAACTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGATTCTTTTACGCTAAGCTAATCA                         >  SRR4302536.6444549/1‑94 (MQ=60)

                                                                         CTTTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAA                      >  SRR4302536.5007232/1‑94 (MQ=60)

                                                                           TTGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAG                    <  SRR4302536.6430944/94‑1 (MQ=60)

                                                                            TGCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGT                   <  SRR4302536.6596215/94‑1 (MQ=60)

                                                                             GCGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTG                  <  SRR4302536.1298237/94‑1 (MQ=60)

                                                                              CGAAACAGGCACACCGGAGCAACCGGTTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGA                 <  SRR4302536.5338136/94‑1 (MQ=60)

                                                                              CGAAACAGGAACACCGGAGCAACCGGTTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGA                 <  SRR4302536.607042/94‑1 (MQ=60)

                                                                              CGAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGA                 <  SRR4302536.2981436/94‑1 (MQ=60)

                                                                               GAAACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGAT                <  SRR4302536.6340997/94‑1 (MQ=60)

                                                                                AAACAGCAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATG               <  SRR4302536.486419/94‑1 (MQ=60)

                                                                                 AACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGA              >  SRR4302536.5042564/1‑94 (MQ=60)

                                                                                 AACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGA              >  SRR4302536.5939177/1‑94 (MQ=60)

                                                                                 AACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGA              >  SRR4302536.2111639/1‑94 (MQ=60)

                                                                                  ACAGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAG             >  SRR4302536.5669798/1‑94 (MQ=60)

                                                                                    AGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGAT           >  SRR4302536.4302142/1‑94 (MQ=60)

                                                                                    AGGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGAT           >  SRR4302536.4963219/1‑94 (MQ=60)

                                                                                     GGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATA          >  SRR4302536.4590742/1‑94 (MQ=60)

                                                                                     GGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATA          <  SRR4302536.6452213/94‑1 (MQ=60)

                                                                                     GGAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATA          >  SRR4302536.6714585/1‑94 (MQ=60)

                                                                                      GAACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAA         <  SRR4302536.1596426/94‑1 (MQ=60)

                                                                                       AACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAAC        <  SRR4302536.2076839/94‑1 (MQ=60)

                                                                                        ACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACG       >  SRR4302536.639766/1‑94 (MQ=60)

                                                                                        ACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACG       <  SRR4302536.1864199/94‑1 (MQ=60)

                                                                                        ACACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACG       <  SRR4302536.4968514/94‑1 (MQ=60)

                                                                                         CACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGG      >  SRR4302536.4436397/1‑94 (MQ=60)

                                                                                          ACCGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGGG     >  SRR4302536.5134518/1‑94 (MQ=60)

                                                                                            CGGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGGGTC   >  SRR4302536.1997680/1‑94 (MQ=60)

                                                                                             GGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGGGTCG  <  SRR4302536.2438610/94‑1 (MQ=60)

                                                                                             GGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGGGTCG  <  SRR4302536.6041207/94‑1 (MQ=60)

                                                                                             GGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGGGTCG  <  SRR4302536.1480396/94‑1 (MQ=60)

                                                                                             GGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGGGTCG  <  SRR4302536.3244404/94‑1 (MQ=60)

                                                                                             GGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGGGTCG  >  SRR4302536.1456200/1‑94 (MQ=60)

CACCTGTTCGGTGTTACCGGAAGAGAATAGCCTGCAGATTAAAGCCTTTTTGCAACGTACCGCTGATGCCGAACTTTGCGAAACAGGAACACCAGAGCAACCGGGTAAACAAAATCTACCTGGTGCCGAAGAGGGCGACGGCTTCTTTTACGCTAAGCTAATCAAAAAGTGATGAGATAACGGGTCG  >  NC_000913/3433962‑3434148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`