Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,175,949 |
+G |
intergenic (+82/‑76) |
nusG → / → rplK |
NusG/50S ribosomal subunit protein L11 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,175,947 | 1 | . | G | 99.5%
| 601.4
/ ‑3.7
| 183 | intergenic (+80/‑78) | nusG/rplK | NusG/50S ribosomal subunit protein L11 |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (87/95); total (87/96) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-01 |
Only 100 of 199 total aligned reads displayed.
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGA > NC_000913/4175856‑4176034
|
gAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g < 2:4095745/93‑1 (MQ=255)
gAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g < 1:358724/93‑1 (MQ=255)
aaaaaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑gg < 1:1041994/93‑1 (MQ=255)
aaaaaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑gg < 2:980717/93‑1 (MQ=255)
aaaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑gggc < 2:2785241/93‑3 (MQ=255)
aaaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑gggc > 1:345772/1‑91 (MQ=255)
aaaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑gggc > 1:3183138/1‑91 (MQ=255)
aaGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑gggcc > 2:2694568/1‑90 (MQ=255)
aGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑gggcct > 2:2589055/1‑89 (MQ=255)
tAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGcc > 1:391281/1‑93 (MQ=255)
aaCCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGccc < 1:1855420/93‑1 (MQ=255)
ccAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTa < 2:2075770/93‑1 (MQ=255)
ccAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCATTGCCCGTa > 1:2415878/1‑93 (MQ=255)
cAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTaa > 1:4104989/1‑93 (MQ=255)
cAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTaa < 1:3134085/93‑1 (MQ=255)
cAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTaa > 2:45684/1‑93 (MQ=255)
aGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTaaa > 2:623797/1‑93 (MQ=255)
aTCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGa < 2:3734687/93‑1 (MQ=255)
cAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAtt < 2:4634118/93‑1 (MQ=255)
aaaaaaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAttt > 2:396046/1‑93 (MQ=255)
aaaaaaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAttt < 2:179216/93‑1 (MQ=255)
aaaaaaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAttt < 2:2706199/93‑1 (MQ=255)
aaaaaaGCGGCGATTTAATCGGTGCACAAGGCGTGAGATTGGAATACAATTGCGCGCCTTTTGTTTGTATGGGCCTTGCCCGCATAACGAttt > 2:4209906/1‑93 (MQ=255)
aaaaaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAtttt < 1:4462176/93‑1 (MQ=255)
aaaaaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAtttt < 2:71529/93‑1 (MQ=255)
aaaaaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAtttt < 2:2011977/93‑1 (MQ=255)
aaaaaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGAtttt > 2:1037797/1‑93 (MQ=255)
aaGCGGCGATTTACTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTta < 2:1131582/93‑1 (MQ=255)
aaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCAGTAAAACGATTTTTta > 2:1423757/1‑93 (MQ=255)
gcggcgATTTAATCGTTTCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTtata < 2:1218149/93‑1 (MQ=255)
cggcgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTatat < 1:3407669/93‑1 (MQ=255)
cggcgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTatat < 1:2554363/93‑1 (MQ=255)
ggcgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATc < 2:1587642/93‑1 (MQ=255)
gcgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCa > 1:567135/1‑93 (MQ=255)
cgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCAc > 1:2247837/1‑93 (MQ=255)
gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACg > 2:1273073/1‑93 (MQ=255)
gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACg > 2:2023120/1‑93 (MQ=255)
gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACg < 2:764954/93‑1 (MQ=255)
aTTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACgg > 1:3652342/1‑93 (MQ=255)
aTTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACgg > 1:4670310/1‑93 (MQ=255)
tttAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACggg < 2:3355351/93‑1 (MQ=255)
tttAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACggg < 1:1365076/93‑1 (MQ=255)
tttAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACggg > 2:1020246/1‑93 (MQ=255)
ttAATCGTTGCACAAGGCGTGAGATTGGAACCCAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACgggg > 2:2329927/1‑93 (MQ=255)
aaTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAg < 1:213229/93‑1 (MQ=255)
aaTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAg > 1:4186325/1‑93 (MQ=255)
aTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGc > 1:159720/1‑93 (MQ=255)
aTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGc > 1:4355965/1‑93 (MQ=255)
tCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGcc < 2:4714361/93‑1 (MQ=255)
tCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGcc > 1:1446714/1‑93 (MQ=255)
tCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGcc > 1:3728113/1‑93 (MQ=255)
gTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctc > 2:3573145/1‑93 (MQ=255)
gTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctc < 2:670308/93‑1 (MQ=255)
ttGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctct < 1:1514379/93‑1 (MQ=255)
ttGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctct < 1:4217630/93‑1 (MQ=255)
tGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCtctc < 1:1830571/93‑1 (MQ=255)
gCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCa < 1:4485683/93‑1 (MQ=255)
gCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCa > 1:3826857/1‑93 (MQ=255)
acaAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCaga < 1:2794551/93‑1 (MQ=255)
acaAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCaga < 2:459634/93‑1 (MQ=255)
aGGCGTTAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGc < 2:1507926/93‑1 (MQ=255)
aGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGc > 1:2001144/1‑93 (MQ=255)
aGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGc > 1:989613/1‑93 (MQ=255)
aGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGc < 2:3126183/93‑1 (MQ=255)
ggCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCg < 1:28813/93‑1 (MQ=255)
ggCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCg < 2:1318370/93‑1 (MQ=255)
gCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGt > 2:4266107/1‑93 (MQ=255)
gCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGt < 2:1543265/93‑1 (MQ=255)
cGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGtt < 2:4477316/93‑1 (MQ=255)
gTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGtta > 2:1702054/1‑93 (MQ=255)
gTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGtta > 2:2269413/1‑93 (MQ=255)
tGAGATTGGAATACAATTTCGCGCCTTGTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttat < 2:4672900/93‑1 (MQ=255)
agaTTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttatta < 1:1027041/93‑1 (MQ=255)
gaTTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAc > 1:733647/1‑93 (MQ=255)
aTTGAAATACTATTTCGCGCCTTGTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTTcc < 2:1026703/93‑1 (MQ=255)
ttGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAccc > 2:1059146/1‑93 (MQ=255)
tGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCa < 1:2695356/93‑1 (MQ=255)
ggAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCaa > 2:1608434/1‑93 (MQ=255)
ggAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCaa > 1:3054850/1‑93 (MQ=255)
aaTACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACt > 2:1008820/1‑93 (MQ=255)
aaTACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACt > 1:1294338/1‑93 (MQ=255)
aTACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACtt < 1:45520/93‑1 (MQ=255)
aCAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACTCAACTTGa > 2:2973207/1‑93 (MQ=255)
aCAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGa < 2:1880340/93‑1 (MQ=255)
cAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAg > 1:4022853/1‑93 (MQ=255)
aaTTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAgg > 2:3034725/1‑93 (MQ=255)
aaTTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAgg > 1:532804/1‑93 (MQ=255)
attCGCGGCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGaa < 1:666477/92‑1 (MQ=255)
tCGCGCCTGTTGTTTTTATGGGCCTTGCCCGTAAACCGATTTTTTATATCACGGGCAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAAtt < 2:3269904/93‑1 (MQ=255)
cgcgCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAAttt > 1:2737204/1‑93 (MQ=255)
gcgcCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTta < 2:52830/93‑1 (MQ=255)
gcgcCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTta > 1:2048030/1‑93 (MQ=255)
gcCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTtata < 2:3910693/93‑1 (MQ=255)
gcCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTtata > 2:1366849/1‑93 (MQ=255)
ccTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATaa < 2:2838012/93‑1 (MQ=255)
ccTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATaa > 2:3804083/1‑93 (MQ=255)
cTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAAt < 1:135316/93‑1 (MQ=255)
tttttATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTaa < 1:4257740/93‑1 (MQ=255)
tttttATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTaa > 2:2466843/1‑93 (MQ=255)
tttATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGa < 2:1935756/93‑1 (MQ=255)
|
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑GGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGA > NC_000913/4175856‑4176034
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑G‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA > NC_000913/4175856‑4176042
|
GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑G‑G < SRR4302544.362398/94‑1 (MQ=60)
AAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑G‑GG < SRR4302544.1052331/94‑1 (MQ=60)
AAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑G‑GG < SRR4302544.3367723/94‑1 (MQ=60)
AAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑G‑GG‑C > SRR4302544.349330/1‑94 (MQ=60)
AAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑G‑GG‑C > SRR4302544.3213431/1‑94 (MQ=60)
AGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTT < SRR4302544.2803168/94‑1 (MQ=60)
AGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTT > SRR4302544.4492409/1‑94 (MQ=60)
GCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTG < SRR4302544.585345/94‑1 (MQ=60)
CTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCC > SRR4302544.395250/1‑94 (MQ=60)
TAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCC < SRR4302544.3210337/94‑1 (MQ=60)
AACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCG < SRR4302544.1873362/94‑1 (MQ=60)
CCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑ATTGCCCGTA > SRR4302544.2438869/1‑94 (MQ=60)
CCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAA > SRR4302544.4145812/1‑94 (MQ=60)
CCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAA > SRR4302544.4436127/1‑94 (MQ=60)
CCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAA > SRR4302544.1860767/1‑94 (MQ=60)
CCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAA > SRR4302544.3851724/1‑94 (MQ=60)
CAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAA < SRR4302544.3163858/94‑1 (MQ=60)
GCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAAC < SRR4302544.482400/94‑1 (MQ=60)
CGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACG > SRR4302544.3934990/1‑94 (MQ=60)
CGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACG < SRR4302544.555989/94‑1 (MQ=60)
ATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGAT > SRR4302544.1473993/1‑94 (MQ=60)
AAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTT < SRR4302544.4507086/94‑1 (MQ=60)
CGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATC < SRR4302544.3440251/94‑1 (MQ=60)
CGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATC < SRR4302544.2236809/94‑1 (MQ=60)
CGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATC < SRR4302544.2578886/94‑1 (MQ=60)
GGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCA > SRR4302544.572674/1‑94 (MQ=60)
GCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCAC < SRR4302544.3711348/94‑1 (MQ=60)
GCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCAC > SRR4302544.2268967/1‑94 (MQ=60)
GATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGG > SRR4302544.3688786/1‑94 (MQ=60)
GATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGG > SRR4302544.720147/1‑94 (MQ=60)
GATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGG > SRR4302544.4716473/1‑94 (MQ=60)
ATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGG < SRR4302544.2021817/94‑1 (MQ=60)
ATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGG > SRR4302544.1652644/1‑94 (MQ=60)
TTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGG < SRR4302544.1378645/94‑1 (MQ=60)
TAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAG < SRR4302544.4538749/94‑1 (MQ=60)
TAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAG > SRR4302544.4227784/1‑94 (MQ=60)
AATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGC > SRR4302544.4400193/1‑94 (MQ=60)
AATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGC < SRR4302544.215420/94‑1 (MQ=60)
AATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGC > SRR4302544.161281/1‑94 (MQ=60)
AATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGAAAAACGATTTTTTATATCACGGGGAGC < SRR4302544.215419/94‑1 (MQ=60)
ATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCC > SRR4302544.3765181/1‑94 (MQ=60)
ATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCC > SRR4302544.1461098/1‑94 (MQ=60)
TCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCT < SRR4302544.451559/94‑1 (MQ=60)
CGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTC > SRR4302544.1930060/1‑94 (MQ=60)
CGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTC > SRR4302544.1372282/1‑94 (MQ=60)
TTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTC < SRR4302544.4260270/94‑1 (MQ=60)
TTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTC < SRR4302544.1529395/94‑1 (MQ=60)
TGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCA > SRR4302544.3864809/1‑94 (MQ=60)
TGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCA < SRR4302544.1009474/94‑1 (MQ=60)
TGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCA < SRR4302544.1848370/94‑1 (MQ=60)
GCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAG < SRR4302544.4530745/94‑1 (MQ=60)
CACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGNTTNTAT‑G‑GNGCTTNCCCGTAAAACGATTnnnnnnntnacggggnnnnncncnnn > SRR4302544.2612624/1‑68 (MQ=60)
ACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAG < SRR4302544.2821463/94‑1 (MQ=60)
ACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAG < SRR4302544.2666433/94‑1 (MQ=60)
AAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGC > SRR4302544.2020576/1‑94 (MQ=60)
AAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGC > SRR4302544.999351/1‑94 (MQ=60)
GGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGT < SRR4302544.29088/94‑1 (MQ=60)
GCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTT < SRR4302544.4194517/94‑1 (MQ=60)
GCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTT < SRR4302544.2728893/94‑1 (MQ=60)
GTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTAT < SRR4302544.1208237/94‑1 (MQ=60)
AGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAC > SRR4302544.740820/1‑94 (MQ=60)
AGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAC > SRR4302544.41451/1‑94 (MQ=60)
AGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAC < SRR4302544.1037284/94‑1 (MQ=60)
ATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCC < SRR4302544.134848/94‑1 (MQ=60)
TGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAA < SRR4302544.2721233/94‑1 (MQ=60)
TGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAA > SRR4302544.3084018/1‑94 (MQ=60)
GGAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAAC > SRR4302544.4053304/1‑94 (MQ=60)
GAATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACT > SRR4302544.1307085/1‑94 (MQ=60)
ATACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTG < SRR4302544.45973/94‑1 (MQ=60)
ACAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAG > SRR4302544.4062915/1‑94 (MQ=60)
CAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGG < SRR4302544.3512831/94‑1 (MQ=60)
CAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGG < SRR4302544.77851/94‑1 (MQ=60)
CAATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGG > SRR4302544.538082/1‑94 (MQ=60)
AATTTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGA > SRR4302544.234535/1‑94 (MQ=60)
ATTCGCGGCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAAT < SRR4302544.673055/94‑1 (MQ=60)
TTCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATAACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATT > SRR4302544.1414922/1‑94 (MQ=60)
TCGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTT > SRR4302544.2763589/1‑94 (MQ=60)
CGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTA > SRR4302544.2067762/1‑94 (MQ=60)
CGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTA > SRR4302544.3049760/1‑94 (MQ=60)
CGCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTAAGGAATTTA > SRR4302544.4714578/1‑94 (MQ=60)
GCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTAT > SRR4302544.365812/1‑94 (MQ=60)
GCGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTAT > SRR4302544.4288282/1‑94 (MQ=60)
CGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATA > SRR4302544.4381605/1‑94 (MQ=60)
CGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATA < SRR4302544.1535288/94‑1 (MQ=60)
CGCCTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTGAGTACCCAACATGAGGAATTTATA > SRR4302544.4238173/1‑94 (MQ=60)
CTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATG < SRR4302544.136591/94‑1 (MQ=60)
CTTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATG < SRR4302544.2870246/94‑1 (MQ=60)
TTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGG < SRR4302544.344314/94‑1 (MQ=60)
TTTTGTTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGG < SRR4302544.622778/94‑1 (MQ=60)
TTTTGTTTTTAT‑GAGC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGG < SRR4302544.311273/94‑1 (MQ=60)
TTTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAG < SRR4302544.4301150/94‑1 (MQ=60)
TTTTATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGA < SRR4302544.2568242/94‑1 (MQ=60)
TATGG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAG < SRR4302544.4789261/94‑1 (MQ=60)
tgG‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTA > SRR4302544.3862774/3‑94 (MQ=60)
G‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACA > SRR4302544.778115/1‑94 (MQ=60)
GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA < SRR4302544.3531914/94‑1 (MQ=60)
GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA < SRR4302544.3514001/94‑1 (MQ=60)
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GAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑G‑GC‑CTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAATGGCTAAGAAAGTACAA > NC_000913/4175856‑4176042
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
