Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1357	179.3	9500450	96.1%	9129932	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,201,958	G→A	W354* (TGG→TAG)	hydG →	HydG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,201,958	0	G	A	100.0%	518.5 / NA	147	W354* (TGG→TAG)	hydG	HydG
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (80/67); total (80/67)

Only 100 of 153 total aligned reads displayed.

CCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTGGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCG  >  NC_000913/4201869‑4202046

ccATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGcc                                                                                       >  1:2740116/1‑93 (MQ=255)

 cATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCg                                                                                      >  2:155464/1‑93 (MQ=255)

   ttttCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCggg                                                                                    <  1:2764035/93‑1 (MQ=255)

   ttttCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCggg                                                                                    >  1:4276012/1‑93 (MQ=255)

      tCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGaaa                                                                                 <  1:2914043/93‑1 (MQ=255)

      tCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGaaa                                                                                 <  1:1903123/93‑1 (MQ=255)

         gCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAatat                                                                              >  1:3517978/1‑93 (MQ=255)

          cAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATAtt                                                                             <  1:3534716/93‑1 (MQ=255)

          cAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATAtt                                                                             <  1:2273086/93‑1 (MQ=255)

           aGCGTTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTc                                                                            <  1:3493597/93‑1 (MQ=255)

           aGCGCTTGTCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGTATCTGTTGATTCATTACGACTAGCCGGGAAATATTc                                                                            <  2:1927240/93‑1 (MQ=255)

            gcgcTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCg                                                                           >  1:1027248/1‑93 (MQ=255)

            gcgcTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCg                                                                           >  2:4376590/1‑93 (MQ=255)

              gcTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTg                                                                         >  1:4194357/1‑93 (MQ=255)

              gcTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTg                                                                         >  2:4726124/1‑93 (MQ=255)

               cTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGa                                                                        >  2:2008662/1‑93 (MQ=255)

                tttGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAg                                                                       <  1:2103165/93‑1 (MQ=255)

                 ttGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGc                                                                      >  2:4716345/1‑93 (MQ=255)

                  tGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCt                                                                     <  1:1301754/93‑1 (MQ=255)

                   gCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTg                                                                    <  2:3539080/93‑1 (MQ=255)

                   gCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTg                                                                    <  1:26236/93‑1 (MQ=255)

                   gCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTg                                                                    <  2:1446276/93‑1 (MQ=255)

                     cGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGa                                                                  <  2:205001/93‑1 (MQ=255)

                     cGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGa                                                                  >  2:13691/1‑93 (MQ=255)

                     cGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGa                                                                  >  1:3466383/1‑93 (MQ=255)

                     cGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGa                                                                  >  1:1975591/1‑93 (MQ=255)

                       aGCGTACTCGCAAGGCGGTAAAAGGTTTTACGCCACAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGaaa                                                                <  1:332125/93‑1 (MQ=255)

                        gCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGaaaa                                                               <  2:2603511/93‑1 (MQ=255)

                         cGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAAc                                                              <  2:1951168/93‑1 (MQ=255)

                          gTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAAcg                                                             >  2:3631122/1‑93 (MQ=255)

                          gTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAAcg                                                             >  2:1711376/1‑93 (MQ=255)

                           tAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAACCGGGAAATATTCGTGAGCTGGAAAAcgc                                                            >  2:2134110/1‑93 (MQ=255)

                            aaTCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAAcgcg                                                           >  1:453222/1‑93 (MQ=255)

                             aTCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCgg                                                          >  2:505397/1‑93 (MQ=255)

                             aTCGCAAGGCAGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCgg                                                          <  2:218772/93‑1 (MQ=255)

                              tCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCggg                                                         >  1:719686/1‑92 (MQ=255)

                               cGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTg                                                        <  1:422324/93‑1 (MQ=255)

                               cGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTg                                                        <  1:4538544/93‑1 (MQ=255)

                                 cAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGa                                                      <  1:2271391/93‑1 (MQ=255)

                                 cAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGa                                                      >  1:122245/1‑93 (MQ=255)

                                  aaGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGaa                                                     <  2:2181793/93‑1 (MQ=255)

                                  aaGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGaa                                                     >  1:3881268/1‑93 (MQ=255)

                                  aaGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGaa                                                     >  1:1637837/1‑93 (MQ=255)

                                   aGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGaag                                                    >  2:389765/1‑92 (MQ=255)

                                         tAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAg                                              >  1:2608595/1‑93 (MQ=255)

                                          aaaaGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgt                                             <  2:1853210/93‑1 (MQ=255)

                                           aaaGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgtg                                            >  2:3366768/1‑93 (MQ=255)

                                            aaGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgtgg                                           >  1:3020319/1‑93 (MQ=255)

                                            aaGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgtgg                                           <  2:2651092/93‑1 (MQ=255)

                                             aGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgtggt                                          <  1:4690525/93‑1 (MQ=255)

                                              ggTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgtggtg                                         >  1:4733655/1‑93 (MQ=255)

                                               gTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGtgc                                        <  2:1868393/93‑1 (MQ=255)

                                                 tttACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGtgctg                                      >  2:693647/1‑93 (MQ=255)

                                                 tttACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGtgctg                                      <  1:3910371/93‑1 (MQ=255)

                                                 tttACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGtgctg                                      >  1:4707049/1‑93 (MQ=255)

                                                  ttACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGtgctgc                                     <  1:968172/93‑1 (MQ=255)

                                                  ttACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGtgctgc                                     <  1:1175742/93‑1 (MQ=255)

                                                    aCGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGctgctg                                   >  2:398224/1‑93 (MQ=255)

                                                     cGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGa                                  <  1:1855792/93‑1 (MQ=255)

                                                      gCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGAc                                 >  1:1203632/1‑93 (MQ=255)

                                                      gCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGAc                                 <  2:2461462/93‑1 (MQ=255)

                                                       ccccAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTTGTGCTGCTGAcc                                <  2:1415830/93‑1 (MQ=255)

                                                        cccAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCg                               >  1:3720825/1‑93 (MQ=255)

                                                          cAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCggg                             >  1:983033/1‑93 (MQ=255)

                                                          cAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCggg                             >  2:3745532/1‑93 (MQ=255)

                                                            ggCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGa                           <  1:3171366/93‑1 (MQ=255)

                                                              cGATGGATCTTTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAat                         <  2:1817439/93‑1 (MQ=255)

                                                               gATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAata                        >  2:3094964/1‑93 (MQ=255)

                                                               gATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAata                        >  2:2198762/1‑93 (MQ=255)

                                                                aTGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAatat                       >  2:66036/1‑93 (MQ=255)

                                                                 tGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAatata                      >  1:1801859/1‑93 (MQ=255)

                                                                  ggATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACTGGCAGTGGTGCTGCTGACCGGGGAatatat                     >  1:4201255/1‑93 (MQ=255)

                                                                  ggATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAatatat                     >  2:2607370/1‑93 (MQ=255)

                                                                  ggATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAatatat                     >  1:323180/1‑93 (MQ=255)

                                                                    aTCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATAttt                   >  1:1764413/1‑93 (MQ=255)

                                                                    aTCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATAttt                   <  2:2384759/93‑1 (MQ=255)

                                                                     tCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTc                  >  2:2910987/1‑93 (MQ=255)

                                                                       tGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCg                >  1:532978/1‑93 (MQ=255)

                                                                        gTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTccta               >  2:3700091/1‑91 (MQ=255)

                                                                        gTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGa               >  2:675837/1‑93 (MQ=255)

                                                                        gTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGa               >  2:4600968/1‑93 (MQ=255)

                                                                        gTTGATTCATTACGACTAGCCGGAAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGa               <  2:3986372/93‑1 (MQ=255)

                                                                         ttGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGaa              <  1:1768945/93‑1 (MQ=255)

                                                                         ttGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGaa              >  1:2329493/1‑93 (MQ=255)

                                                                         ttGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGaa              <  1:613895/93‑1 (MQ=255)

                                                                          tGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAAc             <  2:510296/93‑1 (MQ=255)

                                                                            aTTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAAcgc           <  1:31176/93‑1 (MQ=255)

                                                                              tCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGa         <  2:370296/93‑1 (MQ=255)

                                                                              tCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGa         >  1:456677/1‑93 (MQ=255)

                                                                              tCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGa         >  1:3928473/1‑93 (MQ=255)

                                                                                aTTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGc       <  2:4095901/93‑1 (MQ=255)

                                                                                aTTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGc       >  1:3824060/1‑93 (MQ=255)

                                                                                 ttACGCCTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGATGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCt      <  2:1750506/93‑1 (MQ=255)

                                                                                 ttACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCt      <  1:193779/93‑1 (MQ=255)

                                                                                 ttACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCt      <  1:667483/93‑1 (MQ=255)

                                                                                   aCGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGc    >  1:757149/1‑93 (MQ=255)

                                                                                   aCGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGc    >  1:757147/1‑93 (MQ=255)

                                                                                   aCGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGc    <  1:4740120/93‑1 (MQ=255)

                                                                                    cGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGcc   <  2:4723452/93‑1 (MQ=255)

                                                                                     gACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCg  >  2:1237485/1‑93 (MQ=255)

CCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTGGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCG  >  NC_000913/4201869‑4202046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTGGCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTGGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTGGC  >  NC_000913/4201865‑4202051

CTGGCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTA                                                                                               >  SRR4302544.3133445/1‑94 (MQ=60)

CTGGCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTA                                                                                               >  SRR4302544.504401/1‑94 (MQ=60)

CTGGCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTA                                                                                               >  SRR4302544.570075/1‑94 (MQ=60)

 TGGCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAG                                                                                              >  SRR4302544.2388785/1‑94 (MQ=60)

   GCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCC                                                                                            >  SRR4302544.2338301/1‑94 (MQ=60)

   GCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCC                                                                                            >  SRR4302544.2766530/1‑94 (MQ=60)

    CCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCG                                                                                           >  SRR4302544.3932072/1‑94 (MQ=60)

    CCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCG                                                                                           >  SRR4302544.4781760/1‑94 (MQ=60)

      ATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGG                                                                                         >  SRR4302544.4319669/1‑94 (MQ=60)

       TTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGA                                                                                        <  SRR4302544.2790621/94‑1 (MQ=60)

         TTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAA                                                                                      >  SRR4302544.335941/1‑94 (MQ=60)

          TCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAAT                                                                                     <  SRR4302544.2942070/94‑1 (MQ=60)

          TCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAAT                                                                                     <  SRR4302544.1921517/94‑1 (MQ=60)

            TGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATAT                                                                                   >  SRR4302544.3551571/1‑94 (MQ=60)

              CAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTC                                                                                 <  SRR4302544.3568525/94‑1 (MQ=60)

              CAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTC                                                                                 <  SRR4302544.4251446/94‑1 (MQ=60)

              CAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTC                                                                                 <  SRR4302544.2294487/94‑1 (MQ=60)

               AGCGTTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCG                                                                                <  SRR4302544.3526909/94‑1 (MQ=60)

               AGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCG                                                                                <  SRR4302544.3526910/94‑1 (MQ=60)

               AGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCG                                                                                >  SRR4302544.1037493/1‑94 (MQ=60)

                 CGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTG                                                                              >  SRR4302544.3627337/1‑94 (MQ=60)

                 CGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTG                                                                              >  SRR4302544.4235931/1‑94 (MQ=60)

                   CTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAG                                                                            >  SRR4302544.3211566/1‑94 (MQ=60)

                    TTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGC                                                                           <  SRR4302544.2123403/94‑1 (MQ=60)

                      TGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTG                                                                         <  SRR4302544.1314553/94‑1 (MQ=60)

                       GCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGG                                                                        <  SRR4302544.1262066/94‑1 (MQ=60)

                       GCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGG                                                                        <  SRR4302544.26488/94‑1 (MQ=60)

                        CCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGA                                                                       >  SRR4302544.1994790/1‑94 (MQ=60)

                        CCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGA                                                                       >  SRR4302544.3499448/1‑94 (MQ=60)

                           AGCGTACTCGCAAGGCGGTAAAAGGTTTTACGCCACAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAA                                                                    <  SRR4302544.335580/94‑1 (MQ=60)

                           AGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAA                                                                    >  SRR4302544.3067520/1‑94 (MQ=60)

                              GTAATCGCAAGGCGGTAAAAGGGTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGC                                                                 >  SRR4302544.675089/1‑94 (MQ=60)

                               TAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCG                                                                >  SRR4302544.4609177/1‑94 (MQ=60)

                               TAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCG                                                                >  SRR4302544.457710/1‑94 (MQ=60)

                                 ATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGT                                                              <  SRR4302544.1213679/94‑1 (MQ=60)

                                 ATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGG                                                              >  SRR4302544.726787/1‑94 (MQ=60)

                                   CGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGG                                                            <  SRR4302544.4583918/94‑1 (MQ=60)

                                   CGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGG                                                            <  SRR4302544.426634/94‑1 (MQ=60)

                                    GCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGA                                                           >  SRR4302544.123358/1‑94 (MQ=60)

                                     CAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAA                                                          <  SRR4302544.2292769/94‑1 (MQ=60)

                                     CAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAA                                                          >  SRR4302544.1653966/1‑94 (MQ=60)

                                     CAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAA                                                          >  SRR4302544.3919810/1‑94 (MQ=60)

                                          CGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGC                                                     >  SRR4302544.17870/1‑94 (MQ=60)

                                            GTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAG                                                   >  SRR4302544.2633646/1‑94 (MQ=60)

                                              AAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTG                                                 >  SRR4302544.997768/1‑94 (MQ=60)

                                               AAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGG                                                >  SRR4302544.3049269/1‑94 (MQ=60)

                                                AAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGT                                               <  SRR4302544.4544293/94‑1 (MQ=60)

                                                 AGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTG                                              <  SRR4302544.4736866/94‑1 (MQ=60)

                                                 AGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTG                                              >  SRR4302544.4780334/1‑94 (MQ=60)

                                                   GTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCG                                            >  SRR4302544.4751606/1‑94 (MQ=60)

                                                    TTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTG                                           >  SRR4302544.4753557/1‑94 (MQ=60)

                                                     TTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGC                                          <  SRR4302544.3949219/94‑1 (MQ=60)

                                                      TTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCT                                         <  SRR4302544.977667/94‑1 (MQ=60)

                                                      TTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCT                                         <  SRR4302544.1187463/94‑1 (MQ=60)

                                                      TTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCT                                         >  SRR4302544.4149172/1‑94 (MQ=60)

                                                       TACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTG                                        <  SRR4302544.754047/94‑1 (MQ=60)

                                                       TACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTG                                        >  SRR4302544.2281169/1‑94 (MQ=60)

                                                         CGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGAC                                      >  SRR4302544.1215556/1‑94 (MQ=60)

                                                         CGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGAC                                      <  SRR4302544.1873739/94‑1 (MQ=60)

                                                           CCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCG                                    >  SRR4302544.3757834/1‑94 (MQ=60)

                                                           CCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCG                                    <  SRR4302544.977297/94‑1 (MQ=60)

                                                           CCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCG                                    >  SRR4302544.1907417/1‑94 (MQ=60)

                                                             CCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGG                                  >  SRR4302544.992668/1‑94 (MQ=60)

                                                               AGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGA                                >  SRR4302544.1769797/1‑94 (MQ=60)

                                                                GGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAA                               <  SRR4302544.3201546/94‑1 (MQ=60)

                                                                   GATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATAT                            >  SRR4302544.3865399/1‑94 (MQ=60)

                                                                    ATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATA                           >  SRR4302544.1819463/1‑94 (MQ=60)

                                                                     TGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACTGGCAGTGGTGCTGCTGACCGGGGAATATAT                          >  SRR4302544.4243227/1‑94 (MQ=60)

                                                                     TGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATAT                          >  SRR4302544.326536/1‑94 (MQ=60)

                                                                       GATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTT                        >  SRR4302544.1781676/1‑94 (MQ=60)

                                                                          CTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCG                     <  SRR4302544.579136/94‑1 (MQ=60)

                                                                          CTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCG                     >  SRR4302544.538259/1‑94 (MQ=60)

                                                                            GTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAA                   >  SRR4302544.2351578/1‑94 (MQ=60)

                                                                             TTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAAC                  <  SRR4302544.1786260/94‑1 (MQ=60)

                                                                             TTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAAC                  <  SRR4302544.619916/94‑1 (MQ=60)

                                                                              TGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACG                 <  SRR4302544.2600602/94‑1 (MQ=60)

                                                                                ATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCG               <  SRR4302544.31475/94‑1 (MQ=60)

                                                                                 TTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGA              >  SRR4302544.3967488/1‑94 (MQ=60)

                                                                                 TTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGA              >  SRR4302544.461180/1‑94 (MQ=60)

                                                                                  TCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAG             <  SRR4302544.2880051/94‑1 (MQ=60)

                                                                                   CATTCCGACTAGCCGGGAAATATTCGTGAGCTGGAAACCGCGGTGGCACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGC            <  SRR4302544.1990463/94‑1 (MQ=60)

                                                                                   CATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGC            >  SRR4302544.3861978/1‑94 (MQ=60)

                                                                                     TTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTG          <  SRR4302544.195727/94‑1 (MQ=60)

                                                                                     TTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTG          <  SRR4302544.674072/94‑1 (MQ=60)

                                                                                      TACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGC         >  SRR4302544.764542/1‑94 (MQ=60)

                                                                                      TACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGC         >  SRR4302544.764544/1‑94 (MQ=60)

                                                                                       ACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCC        <  SRR4302544.4786839/94‑1 (MQ=60)

                                                                                        CGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCG       <  SRR4302544.2737684/94‑1 (MQ=60)

                                                                                           CTAGCCGGGAAATATTCGTGAGCTGTAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTG    <  SRR4302544.1672505/94‑1 (MQ=60)

                                                                                           CTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTG    <  SRR4302544.1672504/94‑1 (MQ=60)

                                                                                           CTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTG    <  SRR4302544.4741709/94‑1 (MQ=60)

                                                                                           CTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTG    >  SRR4302544.4112710/1‑94 (MQ=60)

                                                                                             AGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTGGC  >  SRR4302544.1052970/1‑94 (MQ=60)

CTGGCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTGGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTGGC  >  NC_000913/4201865‑4202051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`