Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,203,198 |
Δ1 bp |
coding (312/1290 nt) |
purD ← |
phosphoribosylglycinamide synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,203,195 | 0 | T | . | 94.6%
| 300.8
/ 10.4
| 74 | coding (315/1290 nt) | purD | phosphoribosylglycinamide synthetase |
| Reads supporting (aligned to +/- strand): ref base T (2/2); new base . (28/42); total (30/44) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
Only 100 of 103 total aligned reads displayed.
GCAGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCA > NC_000913/4203104‑4203283
|
gCAGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAATC‑TTTTGTAAACGCtt > 1:4311194/1‑93 (MQ=255)
ccAGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGCtt < 2:3884558/92‑1 (MQ=255)
gATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAGAAA‑TTTGGTAAAAGCtttgg > 1:3743473/1‑91 (MQ=255)
gATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGACAGGAAAGCTTTTGTTTAACGCtttg > 1:1897404/1‑92 (MQ=255)
tACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAATC‑TTTTGTAAAAGCttttagc > 2:1812737/1‑90 (MQ=255)
aCGCCAGCGCAGGTTCTACCTCGGTGAAGGTCTGGTATGCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGcc < 1:3373065/93‑1 (MQ=255)
aGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGGAATC‑TTTGGGAAACGCTTTT‑AGCCTTccc > 1:844047/1‑92 (MQ=255)
aGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCa < 1:1302582/93‑1 (MQ=255)
aGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAAAC‑TTTGGTAAAACCTTTT‑AGCCTTCCa > 1:1014776/1‑93 (MQ=255)
gcgcAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCCGGAAATC‑TTTTGTAAACGCTTTT‑AGCCTTCCAg > 1:74542/1‑93 (MQ=255)
gcgcAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATA‑TTTGGTAAACGC‑TTTGAGGCTTcccg > 1:4278475/1‑91 (MQ=255)
gcAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCAGGAAATC‑TTTTGTAAACGC‑TTTGAGACTTTCAggt > 2:250400/1‑91 (MQ=255)
cAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAAAC‑TTTGGTAAACGC‑TTTGAGCCCTCCCGttt > 2:3531748/1‑92 (MQ=255)
acgTTCTACCGCGGCGAAGTTCTGTTGTTCCGCCCTAGGGATCTTATGGCGGCCCAGTAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTgg < 2:1090301/91‑1 (MQ=255)
aGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCCGTTgg > 2:2908173/1‑93 (MQ=255)
aGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTgg < 2:191762/93‑1 (MQ=255)
gTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGc < 1:379072/93‑1 (MQ=255)
tACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTTGTAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCa > 2:3305666/1‑93 (MQ=255)
ccTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCAcc < 2:1400619/93‑1 (MQ=255)
ccTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCAcc < 1:3717824/93‑1 (MQ=255)
ccTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCAcc < 1:3717823/93‑1 (MQ=255)
cTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTTGTAAACGCTTTT‑AGCCCTCCCGTTGGGCCGCAccc > 1:2457565/1‑92 (MQ=255)
cTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCAcc < 1:4024948/93‑1 (MQ=255)
cGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGc < 2:3834550/93‑1 (MQ=255)
cGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGc < 1:3237617/93‑1 (MQ=255)
cGGTGAAGTTCTGGTATTCCGCAGTAGGGATCTTATGGCGGGCCAGGGAATC‑TTTGGTAAAAGC‑TTTGAGCCTTCCAGTTGGGGCGCACCTGc > 2:2992005/1‑93 (MQ=255)
ggTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTTGTAAACGCTTTT‑AGCCTTCCAGTTGGGGCGCACCTGCg > 2:771734/1‑93 (MQ=255)
ggTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCg < 2:488185/93‑1 (MQ=255)
gTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCCGTTGGGCCGCACCTGCgg > 1:1938957/1‑93 (MQ=255)
tGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGt > 1:3315792/1‑93 (MQ=255)
gAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCACCTGCgggt > 1:4410036/1‑91 (MQ=255)
aaGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATC‑TTTTGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCCGCGGGTg > 2:1217298/1‑93 (MQ=255)
gTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGGAATC‑TTTTGTAAACGCTTTT‑AGCCTTCCAGTTGGGGCGCACCTGCGGGTggg > 2:4713641/1‑93 (MQ=255)
ttCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATC‑TTTTGTAAAAGCTTTT‑AGCCTTCCCGTTGGGGCGCCCCCGCGGGTGGGc > 2:3796292/1‑93 (MQ=255)
ttCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAAAC‑TTTTGTAAACGCTTTT‑TGCCTTCCCGTTTGGCCGCACCTGCGGGTGGGc > 2:3558089/1‑93 (MQ=255)
tCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTTGTAAACGC‑TTTGAGCCTTCCAGTTTGGCCGCACCTGCGGGTGGGcc > 2:3015185/1‑93 (MQ=255)
tCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAAAGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGGTGGGcc > 1:3853607/1‑93 (MQ=255)
cTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGGTGGGCCg > 1:555098/1‑93 (MQ=255)
tATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGa < 2:1485873/93‑1 (MQ=255)
cgccgTAGGGATCTTATGGCGGGCCAGGAAATT‑TTTGGTAAACGCTTTT‑AGCCTTCCAGTTGGGGCGCACCTGCGGTTGGGCCGAAGA‑ttttg > 1:4164376/1‑92 (MQ=255)
gccgTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCa < 2:566001/93‑1 (MQ=255)
gccgTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCa < 2:4387895/93‑1 (MQ=255)
ccgTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTTGTAAACGC‑TTTGAGCCTTCCCGTTGGGGCGCACCTGCGGTTGGGCCGGAGA‑TTTTCAg > 2:2199057/1‑93 (MQ=255)
gTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGcc < 1:2617035/93‑1 (MQ=255)
ctAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGcc < 1:2943301/92‑1 (MQ=255)
tAGGGATCTTATGGCGGGCCCGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCACCTGCGGTTGGGGCGGAGATTTTTCAGcc > 1:3776222/1‑93 (MQ=255)
tAGGGATCTTATGGCGGGCCAGGGAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGGCGAAGA‑TTTTCAGccc > 1:3263513/1‑93 (MQ=255)
tAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGccc < 2:1964306/93‑1 (MQ=255)
tAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAAAGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGccc > 1:963474/1‑93 (MQ=255)
aGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCcg < 2:4023843/93‑1 (MQ=255)
aGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGGAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTTGGCCGAAGA‑TTTTCAGCCcg > 2:587438/1‑93 (MQ=255)
gggATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCcgg < 1:2159123/93‑1 (MQ=255)
ggATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCcggc < 2:3947534/93‑1 (MQ=255)
gATCGTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCcggcg < 1:792572/93‑1 (MQ=255)
aTCTTATGGCGGGCCAGGAAATC‑TTTTGTAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCACCTGCGGGTGGGCCGAAGA‑TTTTTAGCCcggcgg > 2:2991710/1‑93 (MQ=255)
aTCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCcggcgg < 2:2949552/93‑1 (MQ=255)
tCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCggcggc < 1:1211079/93‑1 (MQ=255)
tCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCggcggc < 2:421662/93‑1 (MQ=255)
tCTTATGGCGGGCCAGGAAATC‑TTTGGTAAAAGCTTTT‑AGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCggcggc > 1:4416865/1‑93 (MQ=255)
ttATGGCGGGCCAGGAAATC‑TTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGgcggcg < 2:4044362/93‑1 (MQ=255)
ttATGGCGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCCGCGgcgc > 2:399094/1‑93 (MQ=255)
ggggCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAgg < 1:3716870/92‑1 (MQ=255)
cGGGCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAgg < 1:1010414/93‑1 (MQ=255)
gggCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGt < 1:2489249/93‑1 (MQ=255)
gggCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGt < 1:4091255/93‑1 (MQ=255)
gCCAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTAt < 2:76824/93‑1 (MQ=255)
ccAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATc < 2:798215/93‑1 (MQ=255)
cAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCg > 2:3735711/1‑93 (MQ=255)
cAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCg > 2:3067575/1‑93 (MQ=255)
cAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCg > 2:3998893/1‑93 (MQ=255)
cAGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGGATCg > 2:3462530/1‑93 (MQ=255)
aGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGa > 1:1350598/1‑93 (MQ=255)
aGGAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGa > 1:797910/1‑93 (MQ=255)
ggAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGAc < 1:2981498/93‑1 (MQ=255)
ggAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGAc < 1:2772362/93‑1 (MQ=255)
ggAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGAc > 2:1124473/1‑93 (MQ=255)
ggAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGAc > 1:2376267/1‑93 (MQ=255)
gAAATC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGAcc > 2:2810783/1‑93 (MQ=255)
aaaTC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCTGCGGCGCCGAAGGTATCGACCa > 2:4411245/1‑93 (MQ=255)
aaaTC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCa > 1:1219897/1‑93 (MQ=255)
aaaTC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCa > 2:3510126/1‑93 (MQ=255)
aaaTC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCa < 1:473406/93‑1 (MQ=255)
aaTC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCAc < 1:2455636/93‑1 (MQ=255)
aTC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACg > 1:3264799/1‑93 (MQ=255)
aTC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACg < 1:1825297/93‑1 (MQ=255)
tC‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGc > 1:3850997/1‑93 (MQ=255)
c‑TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGcc > 1:2924713/1‑93 (MQ=255)
gtttGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGTTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGcc < 2:4580016/92‑1 (MQ=255)
tttGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCt > 1:1906376/1‑93 (MQ=255)
tttGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCt < 1:1642267/93‑1 (MQ=255)
tttGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGACt > 1:1359306/1‑93 (MQ=255)
tGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCttt < 1:4297933/93‑1 (MQ=255)
tGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGCCGGCGCGGACGGTATCGACCACGCAttt > 1:2284816/1‑93 (MQ=255)
ggTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTc < 2:1094343/93‑1 (MQ=255)
ggTAAACGC‑TTTGAGCCTTCCAGGTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTc < 1:4079797/93‑1 (MQ=255)
tAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCAc < 2:1865011/93‑1 (MQ=255)
aaaCGC‑TTTGATCCTGCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCAcc < 1:2241563/93‑1 (MQ=255)
aaaCGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCAcc < 1:2241564/93‑1 (MQ=255)
aaCGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCa < 2:1830996/93‑1 (MQ=255)
aaCGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGCGATCCACGACGCCTTTTAccg > 2:3087934/1‑92 (MQ=255)
|
GCAGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATC‑TTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCA > NC_000913/4203104‑4203283
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGCGCT > NC_000913/4203106‑4203291
|
AGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAGAAATTTGGTAAAAGCTTTGG > SRR4302544.3780667/1‑94 (MQ=60)
ACGCCAGCGCAGGTTCTACCTCGGTGAAGGTCTGGTATGCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCT < SRR4302544.3405270/94‑1 (MQ=60)
CAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGGAATCTTTGGGAAACGCTTTT‑AGCCTTCCC > SRR4302544.852380/1‑94 (MQ=60)
CAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAAACTTTGGTAAAACCTTTT‑AGCCTTCCA > SRR4302544.1024897/1‑94 (MQ=60)
AGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGGCCGGAAATCTTTTGTAAACGCTTTT‑AGCCTTCCAG > SRR4302544.75257/1‑94 (MQ=60)
AGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAG < SRR4302544.1315390/94‑1 (MQ=60)
GTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCC < SRR4302544.382933/94‑1 (MQ=60)
CCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAACGCTTTT‑AGCCCTCCCGTTGGGCCGCACCC > SRR4302544.2481006/1‑94 (MQ=60)
CCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCT < SRR4302544.3754804/94‑1 (MQ=60)
CCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCT < SRR4302544.3754805/94‑1 (MQ=60)
CTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCT < SRR4302544.4065038/94‑1 (MQ=60)
CGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCG < SRR4302544.3268604/94‑1 (MQ=60)
GGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCCGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCCGTTGGGCCGCACCTGCGG > SRR4302544.1957730/1‑94 (MQ=60)
GTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGT > SRR4302544.3347372/1‑94 (MQ=60)
TGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCACCTGCGGGT > SRR4302544.4454565/1‑94 (MQ=60)
TTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAAAGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGGTGGGCC > SRR4302544.3891857/1‑94 (MQ=60)
TCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGGAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGGTGGGCCG > SRR4302544.560530/1‑94 (MQ=60)
CCGCCGTAGGGATCTTATGGCGGGCCAGGAAATTTTTGGTAAACGCTTTT‑AGCCTTCCAGTTGGGGCGCACCTGCGGTTGGGCCGAAGA‑TTTTG > SRR4302544.4205628/1‑94 (MQ=60)
GTAGGGATCTTATGGCGGGCCCGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGGCGCACCTGCGGTTGGGGCGGAGATTTTTCAGCC > SRR4302544.3813645/1‑94 (MQ=60)
GTAGGGATCTTATGGCGGGCCAGGGAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGGCGAAGA‑TTTTCAGCCC > SRR4302544.3294679/1‑94 (MQ=60)
GTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCC < SRR4302544.2642150/94‑1 (MQ=60)
GTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAAAGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCC > SRR4302544.972935/1‑94 (MQ=60)
CTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCC < SRR4302544.2971574/94‑1 (MQ=60)
AGGGATCTTATGGCGGGCCAGGAAATCTTTTGTAAACGC‑TTTGAGCCCTTCAGTTGGGGCGCACCCGCGGTTGGGGCGAAGA‑TTTTCAGCCCGG > SRR4302544.4187310/1‑94 (MQ=60)
AGGGATCTTATGGCGGGCCAGGAAAACTTTAGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGGACCTGCGGTTGGGCCGGAGA‑TTTTCAACCCGG > SRR4302544.2958663/1‑94 (MQ=60)
GGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGC < SRR4302544.2179637/94‑1 (MQ=60)
GATCGTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGG < SRR4302544.800244/94‑1 (MQ=60)
ATCTTATGGCGGGCCAGGAAATCTTTGGTAAAAGCTTTT‑AGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGC > SRR4302544.4461448/1‑94 (MQ=60)
TCTTATGGCGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCG < SRR4302544.1223071/94‑1 (MQ=60)
GGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGT < SRR4302544.3753845/94‑1 (MQ=60)
CGGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGT < SRR4302544.1020480/94‑1 (MQ=60)
GGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTA < SRR4302544.4131946/94‑1 (MQ=60)
GGGCCAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTA < SRR4302544.2513092/94‑1 (MQ=60)
CAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGA > SRR4302544.805650/1‑94 (MQ=60)
CAGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGA > SRR4302544.1363983/1‑94 (MQ=60)
AGGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGAC > SRR4302544.2398766/1‑94 (MQ=60)
GGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACC < SRR4302544.3010092/94‑1 (MQ=60)
GGAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACC < SRR4302544.2799031/94‑1 (MQ=60)
GAAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCA > SRR4302544.1231964/1‑94 (MQ=60)
AAATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCAC < SRR4302544.478033/94‑1 (MQ=60)
AATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACG < SRR4302544.2479063/94‑1 (MQ=60)
AATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACG > SRR4302544.3295972/1‑94 (MQ=60)
AATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTGGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACG < SRR4302544.2709366/94‑1 (MQ=60)
ATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGC < SRR4302544.1843075/94‑1 (MQ=60)
ATCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGC > SRR4302544.3889223/1‑94 (MQ=60)
TCTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCC > SRR4302544.2952826/1‑94 (MQ=60)
CTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCT > SRR4302544.1924806/1‑94 (MQ=60)
CTTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGACT > SRR4302544.1372799/1‑94 (MQ=60)
TTTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTT < SRR4302544.1658452/94‑1 (MQ=60)
TTGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGCCGGCGCGGACGGTATCGACCACGCATTT > SRR4302544.2306351/1‑94 (MQ=60)
TGGTAAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTC < SRR4302544.4341795/94‑1 (MQ=60)
GGTAAACGC‑TTTGAGCCTTCCAGGTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCA < SRR4302544.4120386/94‑1 (MQ=60)
AAACGC‑TTTGATCCTGCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCA < SRR4302544.2262651/94‑1 (MQ=60)
AAACGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCA < SRR4302544.2262652/94‑1 (MQ=60)
aactcTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTGTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCcgccaccag > SRR4302544.4242432/6‑85 (MQ=60)
CGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCG > SRR4302544.865149/1‑94 (MQ=60)
CGC‑TTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCG < SRR4302544.2848370/94‑1 (MQ=60)
TGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGGATCGACCACGCCTTTCACCAGCGGCGCT > SRR4302544.1988638/1‑94 (MQ=60)
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AGATACGCCAGCGCAGGTTCTACCTCGGTGAAGTTCTGGTATTCCGCCGTAGGGATCTTATGGCGGGCCAGGAAATCTTTGGTAAACGCTTTTGAGCCTTCCAGTTGGGCCGCACCTGCGGTTGGGCCGAAGA‑TTTTCAGCCCGGCGGCGCGGAAGGTATCGACCACGCCTTTCACCAGCGGCGCT > NC_000913/4203106‑4203291
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
