Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,201,958	G→A	W354* (TGG→TAG)	hydG →	HydG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,201,958	0	G	A	100.0%	985.7 / NA	260	W354* (TGG→TAG)	hydG	HydG
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (139/121); total (139/121)

Only 100 of 262 total aligned reads displayed.

GCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTGGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGC  >  NC_000913/4201868‑4202047

  cATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCg                                                                                       <  1:1878666/93‑1 (MQ=255)

  cATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCg                                                                                       <  1:5228580/93‑1 (MQ=255)

  cATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCg                                                                                       <  2:359633/93‑1 (MQ=255)

  cATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCg                                                                                       >  1:1842858/1‑93 (MQ=255)

  cATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCg                                                                                       >  1:1019737/1‑93 (MQ=255)

  cATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCg                                                                                       >  1:69766/1‑93 (MQ=255)

   aTTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCgg                                                                                      >  2:5406068/1‑93 (MQ=255)

     tttCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGa                                                                                    <  2:2013803/93‑1 (MQ=255)

      ttCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGaa                                                                                   >  2:4903831/1‑93 (MQ=255)

      ttCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGaa                                                                                   <  1:5927590/93‑1 (MQ=255)

         tGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAata                                                                                <  2:5687050/93‑1 (MQ=255)

            aGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTc                                                                             >  2:1204221/1‑93 (MQ=255)

             gcgcTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCg                                                                            >  2:617395/1‑93 (MQ=255)

             gcgcTTTGCCGAGCATAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCg                                                                            <  1:2534283/93‑1 (MQ=255)

              ctcTTTGCCGAGCGTAATCGCAAGTCGGTAAAGGGTTTTACTCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGt                                                                           <  2:3227262/91‑1 (MQ=255)

              cgcTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGt                                                                           <  2:3155037/93‑1 (MQ=255)

              cgcTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGt                                                                           <  1:3333065/93‑1 (MQ=255)

               gcTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTg                                                                          <  2:3780883/93‑1 (MQ=255)

               gcTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTg                                                                          >  2:4485725/1‑93 (MQ=255)

                cTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGa                                                                         <  1:2877060/93‑1 (MQ=255)

                cTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGa                                                                         >  1:5440768/1‑93 (MQ=255)

                cTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGa                                                                         >  1:6118197/1‑93 (MQ=255)

                 tttGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAg                                                                        <  2:156895/93‑1 (MQ=255)

                  ttGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGc                                                                       <  2:4754756/93‑1 (MQ=255)

                   tGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCt                                                                      <  1:5295606/93‑1 (MQ=255)

                    gCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTg                                                                     >  2:1411143/1‑93 (MQ=255)

                     ccGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTgg                                                                    <  1:1225139/93‑1 (MQ=255)

                       gAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGaa                                                                  <  1:4676420/93‑1 (MQ=255)

                       gAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGaa                                                                  >  1:1276497/1‑93 (MQ=255)

                         gCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGaaaa                                                                <  2:5504403/93‑1 (MQ=255)

                           gTAATCGCCAGGCGGTAAATGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAAcc                                                              >  1:6513789/1‑92 (MQ=255)

                            tAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAAcgc                                                             <  2:6687407/93‑1 (MQ=255)

                            tAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAAcgc                                                             >  2:3046623/1‑93 (MQ=255)

                            tAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAAcgc                                                             >  1:1327078/1‑93 (MQ=255)

                             aaTCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAAcgcg                                                            <  2:383687/93‑1 (MQ=255)

                             aaTCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAAcgcg                                                            >  1:2597141/1‑93 (MQ=255)

                             aaTCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAAcgcg                                                            >  2:6359132/1‑93 (MQ=255)

                              aTCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCgg                                                           >  1:4599672/1‑93 (MQ=255)

                              aTCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCgg                                                           <  2:823699/93‑1 (MQ=255)

                               tCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGt                                                          <  2:4344715/93‑1 (MQ=255)

                               tCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGt                                                          <  2:6508676/93‑1 (MQ=255)

                                cGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTg                                                         <  2:5963152/93‑1 (MQ=255)

                                   aaGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGaa                                                      <  2:4029047/93‑1 (MQ=255)

                                   aaGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGaa                                                      <  2:4844144/93‑1 (MQ=255)

                                    aGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAAc                                                     >  1:4049895/1‑93 (MQ=255)

                                    aGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAAc                                                     >  2:1746746/1‑93 (MQ=255)

                                        ggTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGc                                                 >  1:3909584/1‑93 (MQ=255)

                                         gTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCa                                                <  2:4251168/93‑1 (MQ=255)

                                           aaaaGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgt                                              >  1:6307433/1‑93 (MQ=255)

                                           aaaaGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgt                                              >  2:5340812/1‑93 (MQ=255)

                                            aaaGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgtg                                             >  1:1395844/1‑93 (MQ=255)

                                            aaaGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgtg                                             >  1:219679/1‑93 (MQ=255)

                                             aaGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgtgg                                            <  1:4724896/93‑1 (MQ=255)

                                              aGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgtggt                                           >  1:3740769/1‑93 (MQ=255)

                                              aGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgtggt                                           >  2:1817367/1‑93 (MQ=255)

                                               ggTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgtggtg                                          >  1:766356/1‑93 (MQ=255)

                                               ggTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAgtggtg                                          >  1:5544785/1‑93 (MQ=255)

                                                gTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGtgc                                         >  1:6173799/1‑93 (MQ=255)

                                                   ttACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGtgctgc                                      <  2:5791176/93‑1 (MQ=255)

                                                   ttACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGtgctgc                                      <  2:2419642/93‑1 (MQ=255)

                                                   ttACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGtgctgc                                      >  1:4977215/1‑93 (MQ=255)

                                                   ttACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGtgctgc                                      <  1:5096099/93‑1 (MQ=255)

                                                    tACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTgctgct                                     >  1:3791496/1‑93 (MQ=255)

                                                     aCGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGctgctg                                    <  1:1659533/93‑1 (MQ=255)

                                                     aCGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGctgctg                                    >  2:3064050/1‑93 (MQ=255)

                                                         cccAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCg                                >  1:2032272/1‑93 (MQ=255)

                                                          ccAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCgg                               >  2:330387/1‑93 (MQ=255)

                                                          ccAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCgg                               <  2:3485015/93‑1 (MQ=255)

                                                           cAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCggg                              >  2:3589226/1‑93 (MQ=255)

                                                            aGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCgggg                             >  2:1076183/1‑93 (MQ=255)

                                                            aGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCgggg                             <  2:5832332/93‑1 (MQ=255)

                                                             ggCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGa                            >  1:5716052/1‑93 (MQ=255)

                                                                gATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAata                         >  1:5845730/1‑93 (MQ=255)

                                                                gATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAata                         >  1:3890459/1‑93 (MQ=255)

                                                                gATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAata                         <  2:715677/93‑1 (MQ=255)

                                                                gATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAata                         >  1:3626164/1‑93 (MQ=255)

                                                                 aTGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAatat                        >  1:3067315/1‑93 (MQ=255)

                                                                  tGGATCTGTTGGTTCATTACGACTAGACGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGAGCGGGGAatata                       >  1:1714289/1‑93 (MQ=38)

                                                                  tGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAatata                       >  1:4458411/1‑93 (MQ=255)

                                                                   ggATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAatatat                      >  1:5937619/1‑93 (MQ=255)

                                                                   ggATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAatatat                      >  2:2240229/1‑93 (MQ=255)

                                                                   ggATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCCGGGAatatat                      >  1:1549427/1‑93 (MQ=255)

                                                                    gATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATAtt                     <  2:6293526/93‑1 (MQ=255)

                                                                     aTCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGTATATAttt                    >  2:461502/1‑93 (MQ=255)

                                                                      tCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTc                   >  2:2856662/1‑93 (MQ=255)

                                                                      tCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTc                   >  1:1241152/1‑93 (MQ=255)

                                                                          ttGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGCGCAGTGTTGCTGCTGACCGGGGAATATATTTCCGaa               <  1:3137240/93‑1 (MQ=255)

                                                                              ttCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAAcgcg           >  1:4424567/1‑93 (MQ=255)

                                                                              ttCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAAcgcg           <  1:4782321/93‑1 (MQ=255)

                                                                               tCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGa          <  1:851629/93‑1 (MQ=255)

                                                                                cATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAg         >  2:1243114/1‑93 (MQ=255)

                                                                                 aTTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGc        >  2:5282535/1‑93 (MQ=255)

                                                                                 aTTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGc        <  2:4492793/93‑1 (MQ=255)

                                                                                   tACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTg      >  1:3967391/1‑93 (MQ=255)

                                                                                   tACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTg      <  1:663878/93‑1 (MQ=255)

                                                                                    aCGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGc     <  2:2706359/93‑1 (MQ=255)

                                                                                     cGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTgac    >  1:232043/1‑91 (MQ=255)

                                                                                     cGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGcc    <  2:220754/93‑1 (MQ=255)

                                                                                       aCTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGc  >  2:748580/1‑93 (MQ=255)

                                                                                       aCTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGc  <  1:1113110/93‑1 (MQ=255)

GCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTGGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGC  >  NC_000913/4201868‑4202047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTGGCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTGGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTGG  >  NC_000913/4201865‑4202050

CTGGCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTA                                                                                              <  SRR4302536.4216809/94‑1 (MQ=60)

CCGGCCATTTTCTGCAGCGCTTTGCCGAGCATAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTA                                                                                              <  SRR4302536.4216609/94‑1 (MQ=60)

 TGGCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAG                                                                                             >  SRR4302536.761623/1‑94 (MQ=60)

 TGGCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAG                                                                                             >  SRR4302536.6066054/1‑94 (MQ=60)

 TGGACATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAG                                                                                             <  SRR4302536.644012/94‑1 (MQ=60)

  GGCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGC                                                                                            <  SRR4302536.6050792/94‑1 (MQ=60)

  GGCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGC                                                                                            >  SRR4302536.6383805/1‑94 (MQ=60)

    CCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCG                                                                                          >  SRR4302536.1049920/1‑94 (MQ=60)

    CCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCG                                                                                          >  SRR4302536.1898392/1‑94 (MQ=60)

    CCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCG                                                                                          >  SRR4302536.71656/1‑94 (MQ=60)

    CCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCG                                                                                          <  SRR4302536.3951917/94‑1 (MQ=60)

     CATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGG                                                                                         <  SRR4302536.1103768/94‑1 (MQ=60)

     CATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGG                                                                                         <  SRR4302536.1935194/94‑1 (MQ=60)

     CATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGG                                                                                         <  SRR4302536.5384372/94‑1 (MQ=60)

      ATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGG                                                                                        <  SRR4302536.2491943/94‑1 (MQ=60)

       TTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGA                                                                                       <  SRR4302536.400793/94‑1 (MQ=60)

       TTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGA                                                                                       <  SRR4302536.4747036/94‑1 (MQ=60)

         TTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAA                                                                                     <  SRR4302536.6104156/94‑1 (MQ=60)

           CTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATA                                                                                   <  SRR4302536.3868510/94‑1 (MQ=60)

            TGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATAT                                                                                  <  SRR4302536.1294511/94‑1 (MQ=60)

            TGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATAT                                                                                  <  SRR4302536.4689763/94‑1 (MQ=60)

            TGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATAT                                                                                  <  SRR4302536.1913619/94‑1 (MQ=60)

             GCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATT                                                                                 <  SRR4302536.6605843/94‑1 (MQ=60)

              CAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTC                                                                                >  SRR4302536.5783182/1‑94 (MQ=60)

              CAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTC                                                                                >  SRR4302536.126943/1‑94 (MQ=60)

              CAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTC                                                                                <  SRR4302536.1439444/94‑1 (MQ=60)

              CAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTC                                                                                >  SRR4302536.4852590/1‑94 (MQ=60)

               AGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCG                                                                               <  SRR4302536.1715970/94‑1 (MQ=60)

               AGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCG                                                                               >  SRR4302536.1206066/1‑94 (MQ=60)

                GCGCTTTGCCGAGCATAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGT                                                                              <  SRR4302536.2610644/94‑1 (MQ=60)

                 CGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTG                                                                             <  SRR4302536.3431737/94‑1 (MQ=60)

                 CGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTG                                                                             >  SRR4302536.2815182/1‑94 (MQ=60)

                  GCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGA                                                                            >  SRR4302536.6300551/1‑94 (MQ=60)

                  GCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGA                                                                            >  SRR4302536.5603481/1‑94 (MQ=60)

                   CTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAG                                                                           >  SRR4302536.765419/1‑94 (MQ=60)

                   CTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAG                                                                           <  SRR4302536.2961987/94‑1 (MQ=60)

                   CTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAG                                                                           >  SRR4302536.5482168/1‑94 (MQ=60)

                    TTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGC                                                                          <  SRR4302536.5024097/94‑1 (MQ=60)

                     TTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCT                                                                         <  SRR4302536.6316137/94‑1 (MQ=60)

                     TTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCT                                                                         <  SRR4302536.6463336/94‑1 (MQ=60)

                      TGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTG                                                                        <  SRR4302536.5453517/94‑1 (MQ=60)

                        CCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGA                                                                      <  SRR4302536.1261948/94‑1 (MQ=60)

                         CGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAA                                                                     >  SRR4302536.1314709/1‑94 (MQ=60)

                         CGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAA                                                                     <  SRR4302536.4552934/94‑1 (MQ=60)

                          GAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAA                                                                    <  SRR4302536.4817052/94‑1 (MQ=60)

                          GAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAA                                                                    >  SRR4302536.5704836/1‑94 (MQ=60)

                           AGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAA                                                                   >  SRR4302536.5295250/1‑94 (MQ=60)

                           AGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAA                                                                   <  SRR4302536.5632262/94‑1 (MQ=60)

                             CGTAATCGCCAGGCGGTAAATGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACC                                                                 >  SRR4302536.6707884/1‑94 (MQ=60)

                             CGTAATCGCAAGGCTGTAAAAGCTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGAAAATATTCGTGAGCTGGAAAACG                                                                 <  SRR4302536.5416310/94‑1 (MQ=60)

                             CGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACG                                                                 >  SRR4302536.3847047/1‑94 (MQ=60)

                              GTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGC                                                                >  SRR4302536.1366686/1‑94 (MQ=60)

                               TAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCG                                                               >  SRR4302536.2675137/1‑94 (MQ=60)

                               TAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCG                                                               <  SRR4302536.1288528/94‑1 (MQ=60)

                               TAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGACTCATTACGACTAGCCGGGAAATATTCGTGTGCTGGAAACCGCG                                                               >  SRR4302536.3417255/1‑94 (MQ=60)

                                AATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGG                                                              >  SRR4302536.4737781/1‑94 (MQ=60)

                                AATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGG                                                              >  SRR4302536.592884/1‑94 (MQ=60)

                                    GCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGA                                                          <  SRR4302536.3115560/94‑1 (MQ=60)

                                     CAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAA                                                         <  SRR4302536.213005/94‑1 (MQ=60)

                                      AAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAAC                                                        >  SRR4302536.1830074/1‑94 (MQ=60)

                                      AAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAAC                                                        >  SRR4302536.4169954/1‑94 (MQ=60)

                                      AAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAAC                                                        >  SRR4302536.4169952/1‑94 (MQ=60)

                                       AGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACG                                                       >  SRR4302536.6260641/1‑94 (MQ=60)

                                          CGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGC                                                    <  SRR4302536.697848/94‑1 (MQ=60)

                                          CGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGC                                                    >  SRR4302536.1699134/1‑94 (MQ=60)

                                          CGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGC                                                    >  SRR4302536.4025800/1‑94 (MQ=60)

                                           GGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCA                                                   <  SRR4302536.1366637/94‑1 (MQ=60)

                                            GTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAG                                                  <  SRR4302536.2297048/94‑1 (MQ=60)

                                             TAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGT                                                 >  SRR4302536.6047835/1‑94 (MQ=60)

                                             TAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGT                                                 >  SRR4302536.6495314/1‑94 (MQ=60)

                                             TAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGT                                                 >  SRR4302536.1718465/1‑94 (MQ=60)

                                              AAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTG                                                <  SRR4302536.5491997/94‑1 (MQ=60)

                                              AAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTG                                                >  SRR4302536.225507/1‑94 (MQ=60)

                                              AAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTG                                                <  SRR4302536.5292920/94‑1 (MQ=60)

                                              AAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTG                                                >  SRR4302536.1437396/1‑94 (MQ=60)

                                                AAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGT                                              <  SRR4302536.4867050/94‑1 (MQ=60)

                                                AAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGT                                              >  SRR4302536.3852582/1‑94 (MQ=60)

                                                 AGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTG                                             >  SRR4302536.788817/1‑94 (MQ=60)

                                                 AGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTG                                             >  SRR4302536.5710006/1‑94 (MQ=60)

                                                 AGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTG                                             <  SRR4302536.6026866/94‑1 (MQ=60)

                                                  GGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGC                                            >  SRR4302536.6357688/1‑94 (MQ=60)

                                                  GGTTTTACGCCCCAGGCGATGCATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGC                                            <  SRR4302536.3589377/94‑1 (MQ=60)

                                                   GTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCT                                           <  SRR4302536.6159566/94‑1 (MQ=60)

                                                    TTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTG                                          <  SRR4302536.3617816/94‑1 (MQ=60)

                                                    TTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTG                                          <  SRR4302536.3859945/94‑1 (MQ=60)

                                                     TTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGC                                         >  SRR4302536.5126683/1‑94 (MQ=60)

                                                     TTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGC                                         >  SRR4302536.2502747/1‑94 (MQ=60)

                                                      TTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCT                                        <  SRR4302536.2640290/94‑1 (MQ=60)

                                                      TTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCT                                        <  SRR4302536.212772/94‑1 (MQ=60)

                                                      TTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCT                                        <  SRR4302536.5248484/94‑1 (MQ=60)

                                                      TTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCT                                        >  SRR4302536.3904609/1‑94 (MQ=60)

                                                       TACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTG                                       >  SRR4302536.30888/1‑94 (MQ=60)

                                                       TACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTG                                       <  SRR4302536.1992690/94‑1 (MQ=60)

                                                        ACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGA                                      <  SRR4302536.1707710/94‑1 (MQ=60)

                                                          GCCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACC                                    >  SRR4302536.6606881/1‑94 (MQ=60)

                                                           CCCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCG                                   >  SRR4302536.2093470/1‑94 (MQ=60)

                                                            CCCAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGG                                  >  SRR4302536.6109715/1‑94 (MQ=60)

                                                              CAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGG                                >  SRR4302536.4790294/1‑94 (MQ=60)

                                                              CAGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGG                                >  SRR4302536.4928501/1‑94 (MQ=60)

                                                               AGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGA                               >  SRR4302536.5886034/1‑94 (MQ=60)

                                                               AGGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGA                               >  SRR4302536.2753519/1‑94 (MQ=60)

                                                               AGGCGATGGATCTGCTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCGGCTGACCGGGGA                               >  SRR4302536.1182785/1‑94 (MQ=60)

                                                                GGCGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAA                              <  SRR4302536.5158832/94‑1 (MQ=60)

                                                                  CGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATA                            >  SRR4302536.3734612/1‑94 (MQ=60)

                                                                  CGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATA                            >  SRR4302536.6019894/1‑94 (MQ=60)

                                                                  CGATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATA                            >  SRR4302536.4006146/1‑94 (MQ=60)

                                                                   GATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATAT                           >  SRR4302536.3157225/1‑94 (MQ=60)

                                                                   GATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATAT                           >  SRR4302536.179388/1‑94 (MQ=60)

                                                                    ATGGATCTGTTGGTTCATTACGACTAGACGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGAGCGGGGAATATA                          >  SRR4302536.1763860/1‑94 (MQ=60)

                                                                    ATGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATA                          >  SRR4302536.4592381/1‑94 (MQ=60)

                                                                     TGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATAT                         >  SRR4302536.799269/1‑94 (MQ=60)

                                                                     TGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATAT                         <  SRR4302536.4016562/94‑1 (MQ=60)

                                                                     TGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATAT                         <  SRR4302536.4077530/94‑1 (MQ=60)

                                                                     TGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATAT                         >  SRR4302536.6114495/1‑94 (MQ=60)

                                                                     TGGATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCCGGGAATATAT                         >  SRR4302536.1594968/1‑94 (MQ=60)

                                                                       GATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTT                       >  SRR4302536.3417990/1‑94 (MQ=60)

                                                                        ATCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTC                      >  SRR4302536.1278415/1‑94 (MQ=60)

                                                                         TCTGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCC                     >  SRR4302536.1347660/1‑94 (MQ=60)

                                                                           TGTTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGA                   >  SRR4302536.3198277/1‑94 (MQ=60)

                                                                             TTGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGCGCAGTGTTGCTGCTGACCGGGGAATATATTTCCGAAT                 <  SRR4302536.3229053/94‑1 (MQ=60)

                                                                              TGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACG                <  SRR4302536.6783789/94‑1 (MQ=60)

                                                                              TGATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTACTGACCGGGGAATATATTTCCGAACG                <  SRR4302536.1589470/94‑1 (MQ=60)

                                                                               GATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGC               <  SRR4302536.1005296/94‑1 (MQ=60)

                                                                                ATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCG              >  SRR4302536.717826/1‑94 (MQ=60)

                                                                                ATTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCG              >  SRR4302536.4557107/1‑94 (MQ=60)

                                                                                 TTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGA             <  SRR4302536.4874448/94‑1 (MQ=60)

                                                                                 TTCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGA             <  SRR4302536.4926312/94‑1 (MQ=60)

                                                                                  TCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAG            <  SRR4302536.876670/94‑1 (MQ=60)

                                                                                  TCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAG            <  SRR4302536.4575090/94‑1 (MQ=60)

                                                                                  TCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAG            <  SRR4302536.4059424/94‑1 (MQ=60)

                                                                                  TCATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTAGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAG            <  SRR4302536.4518985/94‑1 (MQ=60)

                                                                                  TCATGACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTTGTGCTGCTGACCGGGGAATATATTTCCGAACGCTAG            <  SRR4302536.2750930/94‑1 (MQ=60)

                                                                                   CATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGC           >  SRR4302536.4919221/1‑94 (MQ=60)

                                                                                   CATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGC           >  SRR4302536.4717401/1‑94 (MQ=60)

                                                                                    ATTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCT          >  SRR4302536.3268695/1‑94 (MQ=60)

                                                                                     TTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTG         >  SRR4302536.4085174/1‑94 (MQ=60)

                                                                                     TTACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTG         <  SRR4302536.748037/94‑1 (MQ=60)

                                                                                      TACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGC        <  SRR4302536.683355/94‑1 (MQ=60)

                                                                                       ACGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGAC       >  SRR4302536.238217/1‑94 (MQ=60)

                                                                                        CGACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCG      >  SRR4302536.1381668/1‑94 (MQ=60)

                                                                                         GACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGC     >  SRR4302536.1987849/1‑94 (MQ=60)

                                                                                          ACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCT    <  SRR4302536.5967896/94‑1 (MQ=60)

                                                                                          ACTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCT    <  SRR4302536.1146515/94‑1 (MQ=60)

                                                                                           CTAGCGGGGAAATATACGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTG   <  SRR4302536.1720295/94‑1 (MQ=60)

                                                                                           CTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTG   <  SRR4302536.1110602/94‑1 (MQ=60)

                                                                                           CTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTG   <  SRR4302536.1060151/94‑1 (MQ=60)

                                                                                           CTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTG   <  SRR4302536.1820016/94‑1 (MQ=60)

                                                                                           CTAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTG   >  SRR4302536.3779566/1‑94 (MQ=60)

                                                                                            TAGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTGG  <  SRR4302536.6465805/94‑1 (MQ=60)

                                                                                            TAGCCGGGAAATATGCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTGG  <  SRR4302536.2408910/94‑1 (MQ=60)

CTGGCCATTTTCTGCAGCGCTTTGCCGAGCGTAATCGCAAGGCGGTAAAAGGTTTTACGCCCCAGGCGATGGATCTGTTGATTCATTACGACTGGCCGGGAAATATTCGTGAGCTGGAAAACGCGGTGGAACGGGCAGTGGTGCTGCTGACCGGGGAATATATTTCCGAACGCGAGCTGCCGCTGG  >  NC_000913/4201865‑4202050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`