Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,219,434 |
A→G |
A211A (GCT→GCC) |
arp ← |
Arp |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,219,434 | 0 | A | G | 99.2%
| 767.6
/ ‑4.2
| 236 | A211A (GCT→GCC) | arp | Arp |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (125/109); total (126/110) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 263 total aligned reads displayed.
CACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCAGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGC > NC_000913/4219344‑4219523
|
accaGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGgcggca > 1:804381/1‑93 (MQ=255)
accaGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGgcggca > 1:1029489/1‑93 (MQ=255)
ccaGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaa > 2:2710305/1‑93 (MQ=255)
ccaGTAATATGGCTGCCATAAAACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCCgcaa > 2:803057/1‑93 (MQ=255)
caGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaac > 1:733676/1‑93 (MQ=255)
caGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaac > 1:2717241/1‑93 (MQ=255)
aGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaacg > 2:3471070/1‑93 (MQ=255)
aaTATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaacgcaa < 2:1778584/93‑1 (MQ=255)
aaTATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaacgcaa < 1:1506454/93‑1 (MQ=255)
aaTATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGgcaacgcaa < 2:339961/93‑1 (MQ=255)
tatGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGcaacgcaacg > 1:3052905/1‑93 (MQ=255)
tatGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGcaacgcaacg > 2:3372423/1‑93 (MQ=255)
atGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCaacgcaacgc < 1:3353295/93‑1 (MQ=255)
gCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGcccc < 1:3191077/93‑1 (MQ=255)
cTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCt < 1:2149509/93‑1 (MQ=255)
cATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAgg > 1:2326782/1‑93 (MQ=255)
cATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAgg > 1:3124534/1‑93 (MQ=255)
aTAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGa < 1:2414099/93‑1 (MQ=255)
tAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGAc > 1:2467246/1‑93 (MQ=255)
tAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGAc > 1:36572/1‑93 (MQ=255)
tAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGAc < 1:4174215/93‑1 (MQ=255)
aaCACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACg < 1:4291214/93‑1 (MQ=255)
acacTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACgg > 1:2582657/1‑93 (MQ=255)
cacTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGc < 2:1542106/93‑1 (MQ=255)
acTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCt < 1:2283633/93‑1 (MQ=255)
acTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCt < 2:3549764/93‑1 (MQ=255)
acTGATGCCATGTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCGCCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCt < 1:109023/93‑1 (MQ=255)
cTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTg < 1:1280372/93‑1 (MQ=255)
cTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTg > 2:588770/1‑93 (MQ=255)
cTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTg > 1:4410230/1‑93 (MQ=255)
tGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTgg > 1:2945391/1‑93 (MQ=255)
gATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGa > 1:4371897/1‑93 (MQ=255)
aTGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGaa > 2:4289895/1‑93 (MQ=255)
ccATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAAcc < 1:970217/93‑1 (MQ=255)
aTTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCaa < 1:2200304/93‑1 (MQ=255)
tttGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGACACCAAc > 1:3874873/1‑93 (MQ=255)
gATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGcc < 2:1890480/93‑1 (MQ=255)
gATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGcc < 2:243037/93‑1 (MQ=255)
aTTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCa > 2:2992952/1‑93 (MQ=255)
ttCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCaa < 2:1144850/93‑1 (MQ=255)
ttCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCaa < 2:2526639/93‑1 (MQ=255)
tacATCTTGTCAAAATATGCTTTCATACCTAGCCCGAAATCCCCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCaaa < 1:1934233/91‑1 (MQ=255)
tCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCaaa < 1:2823764/93‑1 (MQ=255)
cATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGt > 1:3944556/1‑93 (MQ=255)
cATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGt < 1:4733255/93‑1 (MQ=255)
aTCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAgac > 2:1478601/1‑91 (MQ=255)
aTCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTc < 2:2542837/93‑1 (MQ=255)
aTCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTc < 1:2029223/93‑1 (MQ=255)
aTCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTc < 1:1199671/93‑1 (MQ=255)
aTCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTc < 1:3521519/93‑1 (MQ=255)
aTCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCAGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTc < 1:4042649/93‑1 (MQ=255)
tCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCt < 2:3788031/93‑1 (MQ=255)
tCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCt < 2:4363353/93‑1 (MQ=255)
tCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCt > 1:566886/1‑93 (MQ=255)
tCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCt > 1:3501465/1‑93 (MQ=255)
cTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTg > 1:1424065/1‑93 (MQ=255)
ttGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTgg < 2:704522/93‑1 (MQ=255)
ttGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTgg > 2:948954/1‑93 (MQ=255)
ttGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGACCCTCAGGACGGCTGGAAATCAACGCCAAAGGCTgg > 2:412971/1‑93 (MQ=255)
tGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGt < 2:4481567/93‑1 (MQ=255)
tCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGttt < 1:3977957/93‑1 (MQ=255)
aaaaTATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGttttt > 2:3965469/1‑93 (MQ=255)
aaTATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGc > 2:3192146/1‑93 (MQ=255)
aaTATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGc < 1:2260906/93‑1 (MQ=255)
atatGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCa > 1:1792993/1‑93 (MQ=255)
tGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAttt > 1:1888158/1‑93 (MQ=255)
tttCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAtttttt > 1:488168/1‑93 (MQ=255)
tttCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAtttttt > 1:4659658/1‑93 (MQ=255)
tttCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAtttttt < 1:4139000/93‑1 (MQ=255)
aTAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTttgttg > 2:3944886/1‑93 (MQ=255)
aaCTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCTCCTCAGGACGGCTGGAAACCATCGCCAAAGTCTGGTTTTTGCATTCATTGTTGaa > 2:4214490/1‑93 (MQ=255)
aaCTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGaa > 1:3146023/1‑93 (MQ=255)
aaCTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGaa > 1:391061/1‑93 (MQ=255)
aCTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAg > 1:3621369/1‑93 (MQ=255)
cTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGt > 1:4352529/1‑93 (MQ=255)
tAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAGCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTg > 1:2667666/1‑93 (MQ=255)
tAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTg > 2:1664238/1‑93 (MQ=255)
aGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGc < 2:2373482/93‑1 (MQ=255)
gCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCg > 2:2838584/1‑93 (MQ=255)
gCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCg > 2:2956170/1‑93 (MQ=255)
ccGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTTCGTg > 2:3418680/1‑93 (MQ=255)
cGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTga < 2:308838/93‑1 (MQ=255)
cGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTga < 1:1446987/93‑1 (MQ=255)
cGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTga > 2:1333595/1‑93 (MQ=255)
gAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTTCGTgag < 2:1456011/93‑1 (MQ=255)
gAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTgag > 1:3383047/1‑93 (MQ=255)
gAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTgag > 2:2776546/1‑93 (MQ=255)
aaaTCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGATTTTGCATTTTTTGTTGAAGTGCGTgaga > 1:3723888/1‑93 (MQ=255)
aaTCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGaa > 1:3313656/1‑93 (MQ=255)
aaTCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGaa > 2:4670774/1‑93 (MQ=255)
cACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAAtt < 1:3888269/93‑1 (MQ=255)
aCCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAAttt < 2:877594/93‑1 (MQ=255)
gcaggcggCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTc < 2:3216268/93‑1 (MQ=255)
gcaggcggCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTc < 1:4235287/93‑1 (MQ=255)
caggcggCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCa < 2:2029507/93‑1 (MQ=255)
caggcggCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCa < 2:1196667/93‑1 (MQ=255)
aggcggCAACGCAAGGGCCCTCAGGACGGCTGGAAACCAAGGCCAAAGTCTGGTTTTTGTATTTTTTGTTGAAGTGCGTGAGAAATTTGTCAg > 2:4534895/1‑93 (MQ=255)
aggcggCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAg > 2:1857094/1‑93 (MQ=255)
ggcggcAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGc < 2:2363656/93‑1 (MQ=255)
ggcggcAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGc < 2:1029489/93‑1 (MQ=255)
|
CACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCAGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGC > NC_000913/4219344‑4219523
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCCACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCAGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGA > NC_000913/4219341‑4219526
|
ATCCACCAGTATTATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCG < SRR4302544.2898842/94‑1 (MQ=60)
ATCCACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCG < SRR4302544.810452/94‑1 (MQ=60)
ATCCACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCG < SRR4302544.810453/94‑1 (MQ=60)
ATCCACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCG < SRR4302544.2898841/94‑1 (MQ=60)
CACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCA > SRR4302544.3061866/1‑94 (MQ=60)
CACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCA > SRR4302544.3933284/1‑94 (MQ=60)
CACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCA > SRR4302544.812218/1‑94 (MQ=60)
CACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCA < SRR4302544.1941234/94‑1 (MQ=60)
CACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCA > SRR4302544.1039749/1‑94 (MQ=60)
ACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAA > SRR4302544.3712535/1‑94 (MQ=60)
CCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAAC > SRR4302544.891989/1‑94 (MQ=60)
CCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAAC > SRR4302544.2743392/1‑94 (MQ=60)
CCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAAC < SRR4302544.4323994/94‑1 (MQ=60)
CCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAAC > SRR4302544.740849/1‑94 (MQ=60)
CAGTAATCTGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCGCCGCAGGCGGCAACG < SRR4302544.593159/94‑1 (MQ=60)
CAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACG < SRR4302544.2524375/94‑1 (MQ=60)
GTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCA > SRR4302544.2718738/1‑94 (MQ=60)
AATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAAC < SRR4302544.1521384/94‑1 (MQ=60)
ATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACG > SRR4302544.3082066/1‑94 (MQ=60)
ATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACG < SRR4302544.3311834/94‑1 (MQ=60)
ATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACC > SRR4302544.2360974/1‑94 (MQ=60)
ATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCC < SRR4302544.3385294/94‑1 (MQ=60)
GGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCC > SRR4302544.318887/1‑94 (MQ=60)
GCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCT < SRR4302544.3221481/94‑1 (MQ=60)
CTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTC < SRR4302544.2169974/94‑1 (MQ=60)
GCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAG < SRR4302544.3593178/94‑1 (MQ=60)
CCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGG > SRR4302544.3154231/1‑94 (MQ=60)
CCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGG > SRR4302544.2348841/1‑94 (MQ=60)
ATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAGTCACCGCAGGCGGCAACGCAACGCCCCTCAGGAC < SRR4302544.810874/94‑1 (MQ=60)
ATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGAC > SRR4302544.1083079/1‑94 (MQ=60)
ATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGAC > SRR4302544.36930/1‑94 (MQ=60)
ATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGAC > SRR4302544.2490815/1‑94 (MQ=60)
ATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGAC < SRR4302544.2437064/94‑1 (MQ=60)
ATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGAC > SRR4302544.487591/1‑94 (MQ=60)
TAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACG < SRR4302544.4215559/94‑1 (MQ=60)
TAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACG < SRR4302544.2778831/94‑1 (MQ=60)
AACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGG < SRR4302544.4335037/94‑1 (MQ=60)
AACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGG > SRR4302544.2607479/1‑94 (MQ=60)
AACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGG > SRR4302544.2607478/1‑94 (MQ=60)
AACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGG > SRR4302544.1358610/1‑94 (MQ=60)
AACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGG > SRR4302544.247949/1‑94 (MQ=60)
AACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGG > SRR4302544.4520536/1‑94 (MQ=60)
CACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCT > SRR4302544.761585/1‑94 (MQ=60)
ACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTG > SRR4302544.4454761/1‑94 (MQ=60)
ACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTG < SRR4302544.2305156/94‑1 (MQ=60)
ACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTG > SRR4302544.3092497/1‑94 (MQ=60)
ACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTG < SRR4302544.1175239/94‑1 (MQ=60)
ACTGATGCCATGTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCGCCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTG < SRR4302544.110017/94‑1 (MQ=60)
CTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGG > SRR4302544.4210239/1‑94 (MQ=60)
CTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGG < SRR4302544.1292987/94‑1 (MQ=60)
CTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGG > SRR4302544.2973686/1‑94 (MQ=60)
TGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGA > SRR4302544.4416222/1‑94 (MQ=60)
ATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAA > SRR4302544.1958635/1‑94 (MQ=60)
TGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAAC < SRR4302544.3209403/94‑1 (MQ=60)
CCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCA > SRR4302544.2205791/1‑94 (MQ=60)
CCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCA < SRR4302544.979731/94‑1 (MQ=60)
CATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAA > SRR4302544.3410550/1‑94 (MQ=60)
ATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGACACCAAC > SRR4302544.3913352/1‑94 (MQ=60)
ATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAAC < SRR4302544.4029117/94‑1 (MQ=60)
ATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAAC > SRR4302544.1699380/1‑94 (MQ=60)
ATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAAC > SRR4302544.4038137/1‑94 (MQ=60)
ATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAAC < SRR4302544.2221043/94‑1 (MQ=60)
TTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACG < SRR4302544.397430/94‑1 (MQ=60)
TGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCC > SRR4302544.1182449/1‑94 (MQ=60)
GATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCA < SRR4302544.3549993/94‑1 (MQ=60)
GATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCA < SRR4302544.4403696/94‑1 (MQ=60)
ATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAA > SRR4302544.4781840/1‑94 (MQ=60)
TTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAA > SRR4302544.938158/1‑94 (MQ=60)
TCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAG < SRR4302544.2851047/94‑1 (MQ=60)
TACATCTTGTCAAAATATGCTTTCATACCTAGCCCGAAATCCCCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAG < SRR4302544.1952956/94‑1 (MQ=60)
CCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGACACCACCGCCAAAGC > SRR4302544.3983746/1‑94 (MQ=60)
CCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGT > SRR4302544.3983745/1‑94 (MQ=60)
CATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTC < SRR4302544.3060725/94‑1 (MQ=60)
CATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTC > SRR4302544.1968988/1‑94 (MQ=60)
CATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTC < SRR4302544.4779934/94‑1 (MQ=60)
ATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCT > SRR4302544.572424/1‑94 (MQ=60)
ATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCT > SRR4302544.3593049/1‑94 (MQ=60)
ATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCT < SRR4302544.3555156/94‑1 (MQ=60)
ATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCT < SRR4302544.995342/94‑1 (MQ=60)
ATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCT > SRR4302544.3534869/1‑94 (MQ=60)
ATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCT < SRR4302544.1211555/94‑1 (MQ=60)
ATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCT < SRR4302544.2048877/94‑1 (MQ=60)
ATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCAGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCT < SRR4302544.4082906/94‑1 (MQ=60)
TCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTG > SRR4302544.1438237/1‑94 (MQ=60)
ACTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTG < SRR4302544.3831659/94‑1 (MQ=60)
CTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGG < SRR4302544.2318734/94‑1 (MQ=60)
CTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGG < SRR4302544.4677548/94‑1 (MQ=60)
CTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGG < SRR4302544.219458/94‑1 (MQ=60)
CTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGG > SRR4302544.3155787/1‑94 (MQ=60)
CTTGTCAAAATATGCTTTCATAACTAGCCAGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGG < SRR4302544.1236724/94‑1 (MQ=60)
TTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGT < SRR4302544.3332373/94‑1 (MQ=60)
TGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTT > SRR4302544.4441885/1‑94 (MQ=60)
TGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTT < SRR4302544.2338402/94‑1 (MQ=60)
TGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCAGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTT > SRR4302544.2150572/1‑94 (MQ=60)
GTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTT < SRR4302544.1861782/94‑1 (MQ=60)
TCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTT < SRR4302544.4017545/94‑1 (MQ=60)
CAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTT > SRR4302544.4193818/1‑94 (MQ=60)
CAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTT < SRR4302544.2366564/94‑1 (MQ=60)
CAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTT > SRR4302544.3135576/1‑94 (MQ=60)
AAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTG > SRR4302544.1735174/1‑94 (MQ=60)
AATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCA > SRR4302544.1810523/1‑94 (MQ=60)
AATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCA < SRR4302544.2282177/94‑1 (MQ=60)
AATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCA < SRR4302544.2282179/94‑1 (MQ=60)
ATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCAT < SRR4302544.3373037/94‑1 (MQ=60)
TATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATT < SRR4302544.1463450/94‑1 (MQ=60)
TATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATT > SRR4302544.4272595/1‑94 (MQ=60)
ATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACTAACGCCtaattctggcttttcgattt > SRR4302544.2278140/1‑74 (MQ=60)
ATGCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTT > SRR4302544.1906397/1‑94 (MQ=60)
TCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTT < SRR4302544.3548885/94‑1 (MQ=60)
GCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTT > SRR4302544.1455726/1‑94 (MQ=60)
GCTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTT > SRR4302544.568882/1‑94 (MQ=60)
CTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTT > SRR4302544.4705753/1‑94 (MQ=60)
CTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTT < SRR4302544.541527/94‑1 (MQ=60)
CTTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTT > SRR4302544.492952/1‑94 (MQ=60)
TTTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTG < SRR4302544.4179984/94‑1 (MQ=60)
TTCATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGT < SRR4302544.4383568/94‑1 (MQ=60)
CATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCACAGTCTGGTTTTTGCATTTTTTGTTG > SRR4302544.3412378/1‑94 (MQ=60)
CATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTG > SRR4302544.4014874/1‑94 (MQ=60)
CATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTG > SRR4302544.1826974/1‑94 (MQ=60)
CATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTG < SRR4302544.3731265/94‑1 (MQ=60)
ATAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGA > SRR4302544.3504790/1‑94 (MQ=60)
TAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAA > SRR4302544.395028/1‑94 (MQ=60)
TAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAA > SRR4302544.3899107/1‑94 (MQ=60)
TAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAA > SRR4302544.3175932/1‑94 (MQ=60)
TAACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAAACAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAA < SRR4302544.2776858/94‑1 (MQ=60)
AACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAG > SRR4302544.3677644/1‑94 (MQ=60)
AACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAG < SRR4302544.1270749/94‑1 (MQ=60)
AACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAG > SRR4302544.3657451/1‑94 (MQ=60)
ACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGT > SRR4302544.4396740/1‑94 (MQ=60)
ACTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGT < SRR4302544.4374235/94‑1 (MQ=60)
CTAGCCCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAGCCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTG > SRR4302544.2693237/1‑94 (MQ=60)
CCGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGA > SRR4302544.4161392/1‑94 (MQ=60)
CGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAG > SRR4302544.3415364/1‑94 (MQ=60)
CGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAG > SRR4302544.4442646/1‑94 (MQ=60)
CGAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAG < SRR4302544.1461372/94‑1 (MQ=60)
GAAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGATTTTGCATTTTTTGTTGAAGTGCGTGAGA > SRR4302544.3760925/1‑94 (MQ=60)
AAATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAA > SRR4302544.3345208/1‑94 (MQ=60)
ATCACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAAT > SRR4302544.2622013/1‑94 (MQ=60)
CACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCCTTTTTTGTTGAAGTGCGTGAGAAATTT > SRR4302544.1429211/1‑94 (MQ=60)
CACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTT > SRR4302544.3937199/1‑94 (MQ=60)
CACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTT < SRR4302544.3926893/94‑1 (MQ=60)
CACCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTT < SRR4302544.3926892/94‑1 (MQ=60)
CCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTT > SRR4302544.1438390/1‑94 (MQ=60)
CCGCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTT < SRR4302544.22234/94‑1 (MQ=60)
GCAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCA < SRR4302544.4278455/94‑1 (MQ=60)
CAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAG > SRR4302544.2904310/1‑94 (MQ=60)
CAGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAG < SRR4302544.470930/94‑1 (MQ=60)
AGGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGC < SRR4302544.4237415/94‑1 (MQ=60)
GGCGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCT > SRR4302544.2858180/1‑94 (MQ=60)
CGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGA > SRR4302544.4178328/1‑94 (MQ=60)
CGGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGATTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGA > SRR4302544.4069150/1‑94 (MQ=60)
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ATCCACCAGTAATATGGCTGCCATAACACTGATGCCATTTGATTCCATCTTGTCAAAATATGCTTTCATAACTAGCCCGAAATCACCGCAGGCAGCAACGCAACGCCCCTCAGGACGGCTGGAAACCAACGCCAAAGTCTGGTTTTTGCATTTTTTGTTGAAGTGCGTGAGAAATTTTTCAGCTGA > NC_000913/4219341‑4219526
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
